Array 1 2806328-2806475 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046570.1 Xanthomonas albilineans strain Xa-FJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2806328 28 96.4 32 A........................... AATCGCCGCAGCGCCCGCACTGACCGATGTAC 2806388 28 100.0 32 ............................ TTCGAGGCGAAGCTGAAGGGGGATGCGTTTCA 2806448 28 89.3 0 ........................TGC. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTGGTGATCGCATGAACGCTCCAATCACCTAAAAAGCCAAGTGGTTTTTGCACATTTTTTGCTTCTTTTTAGAACAGGCCATCAATGCCCCGCAAAGCCCCCACACCCTGCCGCCATCCTGGTTGCGGGAAGCTAGTTTCAGATGGTTCTGGCTACTGCGCCGACCATCAACGTGACAAGGTGGGCTGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGCGCGACGTGGCAGAAACTGCGCGCCTTCGTCATGCAACGCGATCAAGGACTATGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAGACGGCCCAGGAATCGCATCAGGGACGCGAAGGTGCTTGATGAAAAACAATTTGGACAGATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : AATGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCGCGCGTGCAAAATGAAAAACTTTTTTTGGACAGAACCGTGTCAGAGCTAAGCGTTGCAAGGGACTACAAGGCTGACTTGGCGCAGATCGAACAGATCGATGCGACGCCATGGACTGCGGCAAGTCACGCGGACATGACCTCAGAACTGAAAACCTATGCGCGGTCGTAAACCTCTGCCTGTAGCAATCAAGAAGATCAAAGGCACGCTGCAAAAATGCCGGACCAACCCGCATGAGCCCCGTCCCGACGGGCAATTGGGTGAGCCACCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACGTATGCGGTAGAGAACGCACCACTCGGTTTATTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGCGAGGCGCTGGCA # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3069516-3069663 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046570.1 Xanthomonas albilineans strain Xa-FJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3069516 28 96.4 32 A........................... AAAGGCTGACTGGATGACCTGCCAAATAAGGC 3069576 28 100.0 32 ............................ TGGTTAGGGTGGGGCAGGCGCACTTCGCGAGC 3069636 28 89.3 0 ........................AGT. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTGGTGATCGCATGAACGCTCCAATCACCTAAAAAGCCAAGTGGTTTTTGCACATTTTTTGCTTCTTTTTAGAACAGGCCATCAATGCCCCGCAAAGCCCCCACACCCTGCCGCCATCCTGGTTGCGGGAAGCTAGTTTCAGATGGTTCTGGCTACTGCGCCGACCATCAACGTGACAAGGTGGGCTGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGCGCGACGTGGCAGAAACTGCGCGCCTTCGTCATGCAACGCGATCAAGGACTATGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAGACGGCCCAGGAATCGCATCAGGGACGCGAAGGTGCTTGATGAAAAACAATTTGGACAGATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : AATGCTCGGGGCATCAACCGGCCCCGATCCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCTCGCGTGCAAAATGGAAAACTTTTTTTGGAAAAATCCGTGTCAGAGCTAAGCGCTGCAAGGGATTACAAGGCTGACTTGGCGCAGATCGGACAGATCGATGTGACGCCATGGACTGCGGCAGCGCACGCGGACATGACCCCAGCCGAACCCGTAGAACTGGAGCCCTATGCGCGGTCGTAAACCTCTGCCTGTGGCCATCAAGAAGATCAAAGGCACGCTACAAAAATGCCGAACCAACGCGCATGCGCCCCGCCCCGACGGGCAGTTGGGCCAGCCGCCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACCTATGCGGTAGAGAACGCACCGCTGGGTTTGTTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGT # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3376457-3378347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046570.1 Xanthomonas albilineans strain Xa-FJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 3376457 31 100.0 33 ............................... TGGATCCGCCGCATGTCCGAACAGCACGGCATG 3376521 31 100.0 34 ............................... GTTGCGCACGCCGCCGCGCACCTTGTCGTAGCGA 3376586 31 100.0 34 ............................... CACCAATCGCGCTTCGTCCTGGCGCCGCGCACAC 3376651 31 100.0 35 ............................... TTGGTAGCTGCGCGAGACCTGTTCGAGCACCATGC 3376717 31 100.0 35 ............................... TTCATAACGGGGATGCTCCTTTCAGTGTCAGATGG 3376783 31 100.0 35 ............................... CGCAATGATCGTGCGGACGCTGAGGCGATGCAGAG 3376849 31 100.0 36 ............................... TTGCGCGAGCTAGCCTTCTTGGCGCTCGCGCTTGGG 3376916 31 100.0 37 ............................... GTTTGTCGTGCCAGCAACGCTTGGCACTCGGTACGGG 3376984 31 100.0 36 ............................... TTGCACAGGGGCATTCGCCCCGACAATTTCATCGAG 3377051 31 100.0 35 ............................... AGCCGTAAGCTGCGCGCCGTCGTAGTAGTCGCGAG 3377117 31 100.0 34 ............................... TACGACGTATTGCCTTCCCGACTCAATCTGTACG 3377182 31 100.0 35 ............................... GACCTTGCTGGCGTACTCATAGAGATTGATGGTCG 3377248 31 100.0 35 ............................... GACTTCATCCTGATTGCCCAGCAGGGTCTGCAACT 3377314 31 100.0 35 ............................... GGTATACAGCTGCGCCGTTGGCATCTTGGGAGTGG 3377380 31 100.0 34 ............................... TCCTAACCCTGTTGCGTCCGGACGTGATCTGACG 3377445 31 100.0 38 ............................... GCATGTGCGAATGCACGACGGTCGGGGCCGAATGATGG 3377514 31 100.0 36 ............................... GCCTAGACCTCGGCAAAGAACCCGCCTATGAGCCGG 3377581 31 100.0 36 ............................... CTTTGGAAATGCTCACCCACCCCATGCGCTATCTGG 3377648 31 100.0 36 ............................... ACAGTCTGGGCCTCTTGAGCGATGCGCTTCAGCAAG 3377715 31 100.0 35 ............................... ATCCTGGCTATTGTCGCAATTGTCAAGGGCGGCGC 3377781 31 100.0 35 ............................... GAGTTCAGCCGCGGCCCGCTGGTCTGGCGTTACAG 3377847 31 100.0 34 ............................... TCATCTGACTCTCCCTCACTGTTCAAATGGGCAA 3377912 31 100.0 36 ............................... AACGGTAGGAAGGCCGCTGAGGACTGGGCGCGCGCG 3377979 31 96.8 38 ........T...................... GATTTCGTCCTCTCCGTAGCTGTATGGGCTGATGCCAG 3378048 31 100.0 37 ............................... ATGTACTACGTACACGGGAGGGCCATCGCATGAGCCG 3378116 31 100.0 37 ............................... GCCAGTCAACGTGGAGAGATTCACGGCAGCGCGGCTT 3378184 31 100.0 37 ............................... GGCACAAGCGTCCAGCCATCCGGCACACCCTGCAGGC 3378252 31 100.0 34 ............................... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3378317 31 90.3 0 ............A......C..T........ | ========== ====== ====== ====== =============================== ====================================== ================== 29 31 99.6 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATAAAATGGCAGTCGTCACATGATGGTCTTGGTCAGCTACGATGTCAGCACTAGCTCACCGGGAGGCGACAAGCGCCTGCGCAAGGTAGCCAAAGCCTGTCGCGACCTGGGTCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGACCCGGCGCAATGGACCGCACTACGACAACGCCTGTGCGACCTGATAGACCCGGACATCGACAGCCTGAGGTTCTACCACCTCGGTGCAAAGTGGGAAGCCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTTGACCTCAAAGGCCCACTGATCTTTTGACGCGAACCCCAAGCGACCGGGAATTCACCCGCAGGTTCGCAAAAAATGCAAACTATTGATATAAAAAAGAAAGCCGACTCTCAGACCCTCCCCCCCCGGACACAAGAGCATGCAATCGCCCGGTCGAGATGCGATTCGCGAAAACAGGTTTTTTCCTCAAGCACACGCCAGGCTTTATCCTGACGGGG # Right flank : CGAACACCTTGGATTACTCCACCGTCACCGACTTAGCCAAATTGCGCGGCTTGTCCACATCGGTGCCGCGCGCCAGCGCAGTGTGATAGGCAAGCAATTGCACCGGCACGGTGTGCAGCACCGGGCTGAGCAGGCCCGCGTGACGCGGCGTGCGAATCACGTGTACGCCTTCGGATGCGTGGAAATTGCTGTCCTGATCGGCGAAGACGAACAGTTCACCACCGCGTGCACGCACTTCCTGCATGTTGGATTTCACCTTTTCCAGGAGCGCATCGTTGGGCGCGATCACCACTACTGGCATGGTCGCGTCCACCAACGCCAATGGGCCATGCTTGAGTTCACCAGCGGGATAGCCTTCCGCATGGATATAGGTGATTTCCTTGAGTTTGAGCGCGCCCTCCAACGCAATCGGATAATGCAGTCCGCGACCGAGAAACAGCGCATTGTGCTTGTCGGCAAAACGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3564082-3563939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046570.1 Xanthomonas albilineans strain Xa-FJ1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3564081 28 85.7 32 C.GAG....................... TATGATTGTCAGATCGCGTCCGGACGTAACAG 3564021 28 100.0 27 ............................ AGCTGAATGAGCTAATTGGTTCGTTCT 3563966 28 71.4 0 ...A.................CTGCGGG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 85.7 30 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TGACCCGGCGGGCCGCGTCCGACAGCCAGGTGGCGTAGTCGTACTTGGAATCTGTGTCGCTATCGCCCTCATTGCCCTTCAGCTTGGCCTCGCGCCGCGCGTCGATGAACGCGGCGATGGCCGAGCGGAAGCGCTCGGAGCGGGTGAGATGTTGCGGGTCTTCTGTCATGTGGAATCCTTTCGTTCGCTGGAGTGAACCTGCATGTAGAATCCCCACGGCAGCAAGCCACCGTGGGGTGTGGGAGGGGTATCCCCTCAAACGGCTCTTCTGAAAAAGTGTCGTGAGAGCACTTCCTGCATCCTTCTTTGCACAGCAGTCCTTTGTGCGTAGGTCCGGGTTCCAACCGGCTTTGCTGCTTCGGCCCGTCATCGTTCACAGCGATGACGGGTTTTTTTTAACCAGCTGTATGTGATAATTTTGTTCGTAGGATTTTATGGCGCATTTTGCTACTCTAGCCAAAATTTTGTGAAATGCAACAACATTGATAGCGGGCTGATTT # Right flank : CACGGAAGCCCTTCTCATTCCCACGACTTGAAGCCAAGTAAAGGGTGATACCCCCACTTCTTCCCGCCCTTGCCCTCAGGCACGTTCACCGTCGCCAGCCGCTTGGCACAGTCCTGCAACGACAGGTCGAGCTGCTCGGCCTGCTCGGTGAGCAGCGTCATCAGGTCGTATTCGCCCCAGGGCGCGATGCCGGGACCAGGTTCGAGCGCCAGCGGCGCGCACGCACTCTGTTCCACGACCGGGTAGAGTTTTTTGTCGCCGCGATGGTCATCGTCGTCTTCGATGCGATGCAGCACCACGCGCTCCTCGTGCTCATCGGGTAGAAACACCAAAGTGGCCGTTGGCCTCGTGTCGTGACGGAACGGCTGTTGTTGCGGCAGTACGCCGGTCAGCATGGCGTGCGGGTATTGCCATGCGCATGCCGCATCCAAGGAGAACGGCGGGGCGCTGCGCCGGGATGGCGGAGCGGCCTCGCGCGATTTGGGCAGCATGGCCTCGCT # Questionable array : NO Score: 3.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:-1.5, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3568542-3569949 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046570.1 Xanthomonas albilineans strain Xa-FJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3568542 28 100.0 32 ............................ AACGCCAGCGGCCAGATATACAACTTCTTGCA 3568602 28 100.0 32 ............................ ACATGGCCCGGCTGCGGGACGCCGGCAACGGT 3568662 28 100.0 32 ............................ ATCTTGCTCTTGGGTGGGCGGCGCTTCTGGCT 3568722 28 100.0 32 ............................ TGACACTTAGTTAAGCTTTTCATGGATCACTC 3568782 28 100.0 32 ............................ CTACGGCGACGATCAGCGTCGTGGCTTGTGGC 3568842 28 100.0 32 ............................ ATTGCAAACTATCAAAGCGAGTTTTCTTCTTA 3568902 28 100.0 32 ............................ ATCGTACCTCGCTCAGGAGGTCGGCGATGCGA 3568962 28 100.0 32 ............................ TACGCAGACTGGGACGCGGCGTTCATGGAGGC 3569022 28 100.0 32 ............................ TCGATAAGCGCACGGCCAATGCCGGTGCTCTG 3569082 28 100.0 32 ............................ CAGCCCGCAACAGATCGAGGCCAACACGAAGG 3569142 28 100.0 32 ............................ TCGCTGCGCCATAGATTCCGGCCGTCCACGTC 3569202 28 100.0 32 ............................ TCCCATGCTAATCAGTCCCGTCTATTACCCAC 3569262 28 100.0 32 ............................ AAAGAGGATTACCGATGGCTCACGCACCGGGA 3569322 28 100.0 32 ............................ ATGCACCCTGCTTGTCATCAAGTCGCGGCAAG 3569382 28 100.0 32 ............................ GATGCGCCAGGCCATCGAGGAAGGCGGGTTAA 3569442 28 100.0 32 ............................ TTCTGCGCCGCAATCACAATAGTCTGCATGAT 3569502 28 100.0 32 ............................ ACAGCAGCAGTCGCGCAAAGCAAGCCGCAAGC 3569562 28 100.0 32 ............................ CATCGAAGCCGCACTTGCTCCTGATGCAGCGG 3569622 28 100.0 32 ............................ ATGTCCTGCGGCAGCAACGCGCCGATGGGGGC 3569682 28 100.0 32 ............................ CGGTGCTGCGCAAGTGATATCCCGGATCGTGA 3569742 28 100.0 32 ............................ TGGTGGCCGCATCCGCGCAGCACTTGCGCAGG 3569802 28 100.0 32 ............................ ATTAGAGCAATATATGTGCTTGCCATCTATGT 3569862 28 100.0 32 ............................ CGGCTGAGACAAGGCACAAGGAGCCGGTCATG 3569922 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.3 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCACCATCTGATGGCAACCACCTGGCTGCATGGTGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCTGAACGCCTGCGTCGGCGTGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGAACCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTCTTAAGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGACTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATTTGCTGCCGCCTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCTGCGCCTCCACTTGGTGTTCGGCGTGGATATCCTCCGGCACCTCGCTGACCTCATCGATCAACTTTGGGACTTCGTGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAGCGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAATAAAAAATCTTGTTGGCCAGGATCGGATAGCCAATGCCCTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //