Array 1 2-750 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIY01001200.1 Acinetobacter baumannii strain ABOB07 contig-72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 2 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 62 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 122 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 182 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 242 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 302 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 362 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 422 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 482 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 542 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 602 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 662 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 722 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 13 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-1463 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIY01000500.1 Acinetobacter baumannii strain ABOB07 contig-16000037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 61 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 121 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 181 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 241 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 301 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 361 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 421 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 481 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 541 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 601 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 661 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 721 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 781 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 841 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 901 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 961 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1021 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1081 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1141 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1201 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1261 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1316 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1376 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1437 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 97.7 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1884-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIY01000522.1 Acinetobacter baumannii strain ABOB07 contig-17000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1883 28 100.0 32 ............................ TCTTAATCTCTTCAATGTTCATCTTCAACCCT 1823 28 100.0 32 ............................ AAAACGTTGAACATTAGTAAGTGTTAGAACAC 1763 28 100.0 32 ............................ TTACGATGGCCAACAGAAATATTAGACATATA 1703 28 100.0 32 ............................ GATAAAGGTTGTATGCGCTCTAAAGCGTTAGT 1643 28 100.0 32 ............................ AATCCAAACAGCAAAACCGATGATACCTGCAA 1583 28 100.0 32 ............................ AGTGGGCTTATATCTCTTCTATAAAAAACGGA 1523 28 100.0 32 ............................ AATGCTGCTGTTGACGTGGCTGGTCCAGTTGC 1463 28 100.0 32 ............................ GGAGTCAGGCACACTATTAGATAGCAGTGTGC 1403 28 100.0 32 ............................ ATGATGAACCTGTCTTACCTTCAGATCCTTCT 1343 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 1283 28 100.0 32 ............................ TCAAGTGCAGATGCAGCCTAATTATTCTTCTT 1223 28 100.0 32 ............................ AAGAACGTTTGGCAGCAAAAGGAACATTACCA 1163 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 1103 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 1043 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 983 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 923 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 863 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 803 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 743 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 683 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 623 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 563 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 503 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 443 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 383 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 323 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 263 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 203 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 141 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 81 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 31 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : AT # Right flank : AGAAAAAATTGAAAACTTTTTAGAAGTAAATGAGTTCGTCATCGCCCAGATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32-3179 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIY01000427.1 Acinetobacter baumannii strain ABOB07 contig-14000074, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 32 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 92 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 152 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 212 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 272 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 332 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 392 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 452 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 512 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 572 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 632 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 692 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 752 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 812 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 872 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 932 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 992 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 1052 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 1112 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 1172 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 1232 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 1292 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 1352 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 1412 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 1472 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 1532 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 1592 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 1652 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 1712 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 1772 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 1832 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 1892 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 1952 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 2012 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 2072 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 2132 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 2192 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 2252 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 2312 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 2372 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 2432 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 2492 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 2552 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 2612 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 2672 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 2732 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 2792 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 2852 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 2912 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 2972 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 3032 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 3092 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 3152 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= =============================== ================== 53 29 95.0 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : AAAAAATTGAAAACTTTTTAGAAGTAAATGAG # Right flank : | # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //