Array 1 40983-39429 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJVD01000008.1 Escherichia coli strain MOD1-EC1632 MOD1-EC1632_8_length_150185_cov_39.0828, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40982 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 40921 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 40860 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 40799 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 40738 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 40677 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 40616 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 40555 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 40494 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 40433 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40372 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 40311 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40250 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40189 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40128 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40067 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40006 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39945 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39884 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39823 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39762 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39701 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39640 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39579 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39518 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39457 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66957-66684 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJVD01000008.1 Escherichia coli strain MOD1-EC1632 MOD1-EC1632_8_length_150185_cov_39.0828, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66956 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 66895 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 66834 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 66773 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 66712 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //