Array 1 7990-5376 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFGF01000003.1 Listeria monocytogenes strain 2842STDY5753992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7989 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7923 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7857 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7791 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7725 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7659 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7593 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7527 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7460 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7394 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7328 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7262 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7196 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 7130 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 7064 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 6998 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6932 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6866 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6800 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6734 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6668 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6602 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6536 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6470 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6404 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6338 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6272 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6206 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6140 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6074 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 6008 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5942 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5876 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5810 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5744 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5678 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5612 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5546 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5480 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5414 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5379,5382,5387] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //