Array 1 14193-14493 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAEH01000004.1 Neisseria flavescens strain CD-NF1 seq0047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14193 35 91.7 30 T......-A........................... AATACCATTGAATTTATCGAAATTTTCAGA GA [14196] 14260 36 100.0 30 .................................... CTTTGATTGGCGTTTACGTGCTGATTAAAG 14326 36 100.0 30 .................................... AAATCAAAAGACGACAAGTCATAAGGCTTG 14392 36 100.0 30 .................................... AACTTAACCCCTCATAAGAAACAAGAGACA 14458 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTAGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCATATTAATAAAAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : TGCCT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 79273-78908 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAEH01000023.1 Neisseria flavescens strain CD-NF1 seq0065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 79272 36 100.0 29 .................................... CTTCAAACCAGCAATCAAAGTAGAATCAG 79207 36 88.9 30 ..............CTCG.................. TAACGAGTATTGCACCCGTTGGCGCCCATT 79141 36 100.0 30 .................................... CAATCAACCACGAAGGAACGCTGACCAATA 79075 36 100.0 30 .................................... ATCGCAAAGCATAGATAAACCGTCCATCGC 79009 36 100.0 30 .................................... AACAACCTCGTGAAAGGTATATAAAATGAA 78943 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.1 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CGCAGTGCTACAATACAGGTAACACCCTGTTACAACCTCAACT # Right flank : ACCTCAACGGGAAACCCTTATTCTATAAGGGTTTCCCATTTTATTTAGTCTGAAAAATAGGACTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTCACTTCCAAACAGCGGATTGAACCTTCTTGCGGTAGGTTTGTGCATAGCCTATTGTGGTGTTTTTGCAACGAATCACGACCTTTGACAATACGGCTGTATACGGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGAAATTGATTAGCGGCTTTGCGTTTTGCTGCAGTGGTAACCGGTAGGTCGAAGAAGATAATAATCCTCATAAATTTGGCTTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCGTTTTTATTGGTTACGCTGGCTTGAAATGAGGAAATCATTTGGTCTATGGCAGCCAAGGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 193440-194934 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAEH01000028.1 Neisseria flavescens strain CD-NF1 seq0050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 193440 33 100.0 33 ................................. ATAATGTCGTTAATAGGAGCAGCAGTAATTATT 193506 33 97.0 33 T................................ CCTTGTATGAATCCAGTGAAATAGCCGATTGAA 193572 33 100.0 33 ................................. AAGAAGAGGCAGGCTGGCGCGTTGAATGTCGTG 193638 33 100.0 33 ................................. CAGCGTATGGCCGTTAAAAGCTCGCAAAATATT 193704 33 97.0 34 G................................ TTGCCATCTTCCTCAGCAACCGCACCAGTCCACC 193771 33 97.0 33 C................................ TGCACATTCATTTGCCGCGCGATCTCAGGAGAG 193837 33 97.0 33 C................................ CGCTCTGAGTCTCAATATTCCGGAAGACGTGAT 193903 33 97.0 32 C................................ AAAGCAAAAGACATCGTTATCCCTTTCGAAGT 193968 33 97.0 33 T................................ CTTTCCTGCCTCTATATAGCCATCATACATCAA 194034 33 100.0 34 ................................. ATCGCACTCTTTTATTTGATTTTCGAACCATGAA 194101 33 100.0 33 ................................. AAGGGTAAAAAACAGGAAATGCAAGTTTTCGAT 194167 33 100.0 34 ................................. GACAGACTGTTCGGGCTTGCCACTGCTCAACAAT 194234 33 97.0 34 G................................ GCCGACAATATCTTTCAATTCACGGCATTTCGCC 194301 33 97.0 34 G................................ ATGGATGCTTTCGGCACTTTGTAAGCGGTCAGTT 194368 32 93.9 34 C............-................... AAATAGGGAAGATAGGCATTTGACGGAAGAGATG 194434 33 97.0 33 T................................ TGAATTACTTAATACTTAAAAAAAATATATAAC 194500 33 97.0 32 T................................ TTGTTCGCCGTGCGTACCGCGCCACGCATCAA 194565 33 97.0 34 T................................ TGGCAGTCGGCTGTTGATGTGTTTGCTGATGTAT 194632 33 97.0 34 T................................ TCTTCAAAGTCCTGCGCCAGTACCTGACGGACGA 194699 33 93.9 34 G................A............... ATCTGTGGCTTGAACGGTATTTTCCTGATTAATG 194766 33 93.9 33 G.................A.............. AGCGAATGGCCGTCAAGAGTTCGCAAAATGTTG 194832 33 100.0 34 ................................. AGTCAGGTGCCGGGCAGTAAGGAAAGACCTCGCT 194899 32 93.9 0 C............-................... | C,CG,T [194902,194919,194930] ========== ====== ====== ====== ================================= ================================== ================== 23 33 97.4 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCAGAAGGACAGGCGAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTATTCGAATGCGACATCGCACCTGATCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCAGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTACGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTATAACAGAAAAGGCTGTGTTATACTCGCATTCACGCTTTTCTTGGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGACGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CGGCCCCACCTAAATTAGTAAGGACGTCGTAACCTAACCACCAAACCTACCACGCCGCCGTCCGGCCGGCGTGTG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16438-15805 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAEH01000038.1 Neisseria flavescens strain CD-NF1 seq0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 16437 33 97.0 32 T................................ GTGTGTTTAGCTTTTCTGTTGCGCGTTGCTGT T,G [16420,16429] 16370 33 90.9 33 ..AC....T........................ CTAAGTACATGGTTTAACCTTATTAATTCGGGC 16304 33 97.0 35 T................................ ATCGTCATAGTCATCCTCACATGGCATCATGCTGT 16236 33 100.0 33 ................................. AGCACCCCGAACCAAACGCCTGCAGAATAAGTG 16170 33 100.0 34 ................................. CGCCAAACACTTTTATAAGGAAAAACATCATGAA 16103 33 93.9 32 A................T............... ATGATTACTGGCTATATGGTGTTAGCTGGCCG 16038 33 100.0 34 ................................. AATGAGGAAGAGCAGCCGTTGGATATTGAGCTTC 15971 33 97.0 34 .............G................... CAAGGGAATGTCTTTACAATCCCTCGCGTCATCC 15904 33 93.9 34 G............G................... TCTAGCAACTACGAACTCTATGACGACCTATTCC 15837 33 75.8 0 GT..........TG..T......A....C...T | ========== ====== ====== ====== ================================= =================================== ================== 10 33 94.5 34 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : CCCCGGGGGGGTTACCGCGTTTTCGGGTTAAGGTTGGGTTAAAACCCGAAAGGGTTTCCGAACGGGGTTAAGTACCCGGGGGTCCGAACGGTAACGGGGTTAAAAACGAACCGGTTAACCGGCCGTTTCCCCGAACGGTTACCCCGGCCCGTTTACCGGGTCCGGGGGTCCGTTACGGTTACGGTACGGTTTGTAAAAACCGGACCCCCCGAACGTAAAACTTTCGGAAAGGTAACCCTGTAAACCGTACCACCCAACGACCTGACCGGCCTTACCGGGCGGCTTGTGTACGTTGAAACCGAAGGAAGTACCAACGCGTAACCCCAAAAGGTACCACCAA # Right flank : ATCGTCCAAGCAGGCTACTCTTCTTCGGTGCGCAGGAAATTGCCTGCCAGACGGGACGGCTGCATGATTTGGGGAAATATTCAAAAGCCTTTAACCGCCGGTTGTATGGTGGCTCTTCAGGCGATCATGCTACCGCCGGAGCGAAAATTGCAAAAATGCTTGCTTTAGAGTGGAGGTCAAAGTATAACCTGTTGTTATCTCACTTAGGCTAGATAACTTTAATTAATGAATTAAAAGGCAAAAATAATGGAAAATAAACAAACCAATTCAACCATCAAATCTCGTGCGGCGGTGGCATTCGCCCCAAATCAACCCTTACAAATTGTGGAAATCGACGTAGAAATGCCGCGTAAAGGTGAGGTGTTAATTCGTAACACTCACACTGGCGTGTGCCATACTGATGCATTTACGTTATCAGGAAGCGATCCTGAAGGTGTATTCCCTGTGGTTCTTGGGCATGAAGGTGCGGGTGTGGTTGTTGCTGTGGGCGAAGGTGTATC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //