Array 1 518489-515176 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018929.1 Sulfuracidifex tepidarius strain IC-006 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 518488 30 100.0 41 .............................. CAAACGATATGTTTACCGAGGCTGGTATCTATGTTAAAGAT 518417 30 100.0 39 .............................. ACAATGACAAGACAAAAGAGAGGATTGTCTCTCTCTCTT 518348 30 100.0 38 .............................. TCTTAGCCCGTCTGCTACATCTCCTAACACATCTCCTA 518280 30 100.0 37 .............................. AACAAGAGTACAAATATACAGTAATTGGAATGAGTGG 518213 30 100.0 38 .............................. TAGTAGTATGCCCCTGCTCCTACAGCTAAGCCGATTCC 518145 30 100.0 37 .............................. TATGTCATGCCTAGCGGTATCGGGACTTTAGACACCT 518078 30 100.0 37 .............................. CTGGTACACAGACATACAGAAGACGTTTTTCAAAATT 518011 30 100.0 37 .............................. AGTAACCCTAAACAGGTGGATAGAAAAGAGTATATAG 517944 30 100.0 37 .............................. TAATCAGGACTAAGCATGTAAGCTACTAGCCCTGCGA 517877 30 100.0 34 .............................. AACGGTCTCGGCTCTATGAATACCCCTTCTTTCT 517813 30 100.0 38 .............................. CCGAGCTAGTAACACCTCAAGATACAATGTTCTACTTA 517745 30 100.0 38 .............................. TAAAAGTAGGTGATAAGGATTCCTCATCGTTAAGACAA 517677 30 100.0 37 .............................. AGGACAGGGCGAATGACTTCCCTATGTCCTGATAAAT 517610 30 100.0 36 .............................. CCCCACCGCTCGGCAATTCAGTAGCAAAGCTGATTA 517544 30 100.0 37 .............................. ATGATGGAGTTGGTGATGTTAGTATCTACAGTTCCTG 517477 30 100.0 37 .............................. ATTAATTCCATATCTTCCATTTCATCGAGTTTATCTT 517410 30 100.0 38 .............................. GTAGTACTAGTACCAGAAGAAGGATAAGCTGTTACGGG 517342 30 100.0 37 .............................. ATTCGTGTCCGACTGCGGACACGAACCCTCCGGTTAA 517275 30 100.0 38 .............................. CTGTTCATCACAAGGTGAAAAGGTGAGTTCGAAAACTG 517207 30 100.0 37 .............................. ATGATGGAGTTGGTGATGTTAGTATCTACAGTTCCTG 517140 30 100.0 37 .............................. ATTAATTCCATATCTTCCATTTCATCGAGTTTATCTT 517073 30 100.0 38 .............................. GTAGTACTAGTACCAGAAGAAGGATAAGCTGTTACGGG 517005 30 100.0 37 .............................. ATTCGTGTCCGACTGCGGACACGAACCCTCCGGTTAA 516938 30 100.0 38 .............................. CTGTTCATCACAAGGTGAAAAGGTGAGTTCGAAAACTG 516870 30 100.0 36 .............................. CTTTCACATAACAATCAGAACATAGAATGGTATGCT 516804 30 100.0 37 .............................. CAGGAGTCCCCTATCTTTGGCTTCGACTTCCTGCAGG 516737 30 100.0 38 .............................. TACAGGTGAGCATGAGCATGCACCTCCTCCTGTGATGA 516669 30 100.0 35 .............................. AAAGAGGGCAAAGTTCAACCGAAATATGAAGAATG 516604 30 100.0 37 .............................. TAATCAGGACTAAGCATGTAAGCTACTAGCCCTGCGA 516537 30 100.0 34 .............................. AACGGTCTCGGCTCTATGAATACCCCTTCTTTCT 516473 30 100.0 38 .............................. CCGAGCTAGTAACACCTCAAGATACAATGTTCTACTTA 516405 30 100.0 38 .............................. TAAAAGTAGGTGATAAGGATTCCTCATCGTTAAGACAA 516337 30 100.0 37 .............................. AGGACAGGGCGAATGACTTCCCTATGTCCTGATAAAT 516270 30 100.0 35 .............................. ATCATGAGGACGCCAGTGTTTCATGTACATTCATG 516205 30 100.0 35 .............................. TTTTATTGAGATGAGTGCACCTCAAAGTCCTAGTC 516140 30 100.0 37 .............................. CTTTGGGTAAACATAGAAAGTGATCTTCCTTGGTTAA 516073 30 100.0 37 .............................. TAGTCGTTCAATATGGAATACACACTAGACAAAACCG 516006 30 100.0 36 .............................. TATGAGCATACTATCCTCTCTAGGAAGTGCCCTTGT 515940 30 100.0 37 .............................. TATGTAGGCTGAGCTTTTTCATGAGTTTTCCTAAGAA 515873 30 100.0 37 .............................. ACCAATACAGGATTCATCATTTGGGTAGTTTCAAAAG 515806 30 100.0 38 .............................. TAGCCCTATGTATGAAGAACATCTTCTTTCACAATCCA 515738 30 100.0 37 .............................. ATATCAGGGTCTAAGAAAGTCATTTTTCCTCACCTGC 515671 30 100.0 36 .............................. CCGTGTAAAGCGGGATAAGGGTTATCATGATACATC 515605 30 100.0 36 .............................. TCGGACGGTGTGTTAAGTATAGGAGGTGTACTATCT 515539 30 100.0 36 .............................. TCATACGTGAAAGCCAAAGCCATGCCTTCGTTAGGA 515473 30 100.0 36 .............................. CTAAAATCCTGTCAGTCTATTCAGTCTACGAATGAT 515407 30 100.0 37 .............................. TCCCTGAACACAAGTTCAACCCCGCCTTCACAAAGGA 515340 30 100.0 37 .............................. CTCAACTCAGACGCTCAGAAGTTTCCACTAGCCATAG 515273 30 100.0 38 .............................. CACTTCGTAAAAATGTGTAAAATTGAAAGAAGACTAAC 515205 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 50 30 100.0 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : AGAGGTAATAGTTAGTTTGTGCCATTGCTGACTCCACATGTCTCGAGGATGACTTGATCTCAACTACAGTCCTGTCCTCCTTCCTAAACGCGTCTATCTTCATTCCATCTAGGGAGATCGGTAGTTCGTCTCCATATATCTGATGTATCGCTCTGCCCTTCTCTAACTTCGAATGTCCCTCGAATGGAGTGACGTGTCTAGCCATGTACCAGACTTCACGGGGGCAAACCTTTGAGTACCAGATCAAGGTACCCGTGATCACAACGTCCGGTCTCAGGTAAATCGACATAAAGAATAGTTGATTTCTGTGTTTAAAAATTTTCAGATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAGAACGAAATATGTTTTTCAAAACATATTATTTTTCACGTAAAACTCCCTCGGCAGTGAAAGGGAAGTTGATGGTGCGACTTCACTGCCGAATTCAGAGTAACGTTTTTTAGGGAGTTTTTACATAGAATTAAGCAGG # Right flank : AATGTGACAACTCTCATTCTTTATCTCCTCCTAGCCCAACAGTTGTCTCATCTTGGTTTCCCTCTCCTGTTCGGGTAGCTTGGCATTTGAACTATATCTACTAATGACGTACTGATAATGTTGTGTTAATAGGTTAAAATATTTGATAATATTAGTTTTTATTAAATAAGGACTTTTATTTTTAAACTTGTTAAATGTAATGATTTGAAAATGAATAGGTAAACTGCTGAGACGGATTACTGTTATGATCTGTGTGCAGTTAGGCTCCCTTCCGCGGCTGTAAAAGTCCTCATGTCTCTAAGTAACCCAGGGAAGTCACGGATGTGAAAGGGTGAAAGTTCAGAAGATATAAAGTTTATCAGATTTATATCTTAATAAATGTATTATTACACTGTATTTATACTCAGTCAGGCCTTAAAAGACAAGGTCTACGTTTCAGATCTACACTACCAGAGACCTCAATGTTGGCTACAAAGACGCTCATATCCAAGGTAGATAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 546521-547380 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018929.1 Sulfuracidifex tepidarius strain IC-006 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 546521 25 100.0 40 ......................... ACCTAGACAAGAGCTTAGCCGTCATATATGCACTCGTCTC 546586 25 100.0 38 ......................... TGATGAGTGCAATTTCAAAAATGAGTAGAGAGGAGTAG 546649 25 100.0 40 ......................... ATAACAACGAAGTACCCAGACTTTTCAATATATTATTTAG 546714 25 100.0 41 ......................... TAATGAAACTAATAACTGGAAGAGTAGGTTCTGGAAAAACC 546780 25 100.0 40 ......................... TGTAATACCCCGTTTTTGAATGACGTCTCTACTTCCGCTA 546845 25 100.0 35 ......................... CTACTTTGTGCCATACGATAAGTTCATGTCATTAG 546905 25 100.0 39 ......................... GATAAGTCTTACTATAACAGAGGTTTTCCACATACGTAT 546969 25 100.0 42 ......................... CCACTACTATCGGATCAAATAATAAAAAAGGATCCGAAATGT 547036 25 100.0 36 ......................... AGTTTGTATAACTGCTGTCTGTATATTTCTTCACTA 547097 25 100.0 40 ......................... ATGGGTATGCTCAATTGGGCTTCAACATCGAAGAGCCTTG 547162 25 96.0 41 ..........G.............. TGCTCATGGGCGGGGAGGTTTGCGAGAAAATTGATGAAAAC 547228 25 96.0 38 .................T....... GAATAGTGTAAATTATAAACGCTACTGTATCGCTCCCT 547291 25 88.0 40 .........TC......T....... AAACGGAGTTCTTCGAGGCTTTGGCTAGAGTTGGTTTAGG 547356 25 80.0 0 ...A...T.TC....A......... | ========== ====== ====== ====== ========================= ========================================== ================== 14 25 97.1 39 GTTGAACCCATAAAGGGATTGAAAG # Left flank : TAAGGAGTGGGCCTAAGAGGTCAACGCTGAGTATTTCCTTGTCATTTCAGCGCACGAAGTACAATTGGAGTGTTCCATGCGGAATTTAATGGACTTCTATATATATGTATATACTATGCAATTTAATTTAGTTTCTGACTATATTTTTTTATATATAGAATATATCTCTTTTAGATTTTTTTATAAGAATTTCAAAAAAGAACTAAATTCCATCTCTAAAAACGAACCGTTCTGATTATTCTATATAACCTATTTTCTCGAGTTTCTTACAGAGTTAATAAATGATGGAGTTCGAGTCTCCTTGCGACCAAAACGAAATCATTTCAAGAGTTTTACATTTATAAATAGGTGAGTGTCTTTCAACTAGTGAAAAACATCATGCGACCAGCGTAGGACGTCTTGAGGGGAGGGGGAAAGGTCGGATGGAGAGTGGACGGAGGAGACGTAAAGTTTATAGGGGGGAAAGGAGAAATTATTGGTAGAAGTAAATAAAACATTCA # Right flank : GTAAAACATGTTTATTCCAACTTGTATCTGATTTCCCCTCTCCGTTTAACCTAGAAATGAGAAAGTCTGTTTCCGACTGGTTGTGAGCTTAACGTGGTTTGAATGGTTTAACTTGGAAGTGGATTGAGAACGGTTCTTAGAAAGATCTTAGGATGTTAGAATACCGTATGCTCAGTCTTTATAAAATTCTAATCAAAAAATTATTATAGTGTTTGCCATGCCTAAATCCATAAAAAATTTTTATATTTCTGGTATATTTATTCTGTTATCTACAACTCTTTCTCAAGAAACCGAAGTGAGAAGAGAAGAGTCCACTACTCACCCTGATGAAAGTCCGAGGTGGAGGCGATAACTCATGTACCTTGGAAACCCCTGTCCGCCAGGTTACATCAAGGTCGATATAGCTTACCCACCTTACTATGTCTGTTTCCCGATCTCTCAGGGGAATAGAGTGCGAGGGACCTCTCCCGTACAGCCACAAGCGAACCGGTGCATGGAGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 560666-558919 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018929.1 Sulfuracidifex tepidarius strain IC-006 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 560665 25 100.0 43 ......................... ATATATAAATTCCATTGTTATTAACAAGTTAGTATTACATATG 560597 25 100.0 39 ......................... TGTATTTATCCCCTTCTTGCAAGGGGATTATTGCCGTGT 560533 25 100.0 39 ......................... AGTCAATAAATATAAGGAAACGCTTAACGAAGTCAATAA 560469 25 100.0 39 ......................... TCTATTATCTTTACTTCCTCCCCTGGCGTCATGTTCGCT 560405 25 100.0 40 ......................... AACACCGTGGACACGCCATCACCATGTTCACGATGAAAAA 560340 25 100.0 34 ......................... GTAATAGGCATAGGTGAGTGACATGATAAAACCA 560281 25 100.0 39 ......................... TTTCTTAAAAAGTGACGATGAAAAGATAATATTTGCCAC 560217 25 100.0 37 ......................... AGATGTACTATCCTTCACAGTGCCGTTAACTAATAAG 560155 25 100.0 40 ......................... ATACATTACTTGAATCTATATCGAATTATGTAACAAATAT 560090 25 100.0 42 ......................... GTTGCTCTATCATCATAAACCCTTTATCCGATATCCTAGTAG 560023 25 100.0 39 ......................... GAAAGGTCTCTAGTCATTTTAGGGGCTAGAGGAGACGCT 559959 25 100.0 35 ......................... TGACATATCTAGTTCAAGTTGAACACTGCATTTCT 559899 25 100.0 37 ......................... TCCAGTTTATCGTTATAATTTAGAACCATCATTAAAG 559837 25 100.0 38 ......................... GTTTAGTCTCATTACCTCTAGTTTCTACCCTTATTTTC 559774 25 100.0 36 ......................... GAAGCTTTAACCGGAAAGCTCAAATACTCTAGCGTA 559713 25 100.0 40 ......................... ATGTTTACCCAAAATGAAAGAGAAAACCGACACGATACCT 559648 25 100.0 40 ......................... ATAGGAAAGAGAAAACACCTAAACCAAGTTGTTTAAATAC 559583 25 100.0 41 ......................... CAAAACTACAGCGTCAACATACCTCAGGATCTGCAACTCCT 559517 25 100.0 36 ......................... TTATCTCTCGTCCTAAACCTCCAAATAACGCTTCGT 559456 25 100.0 38 ......................... TATACTCCCCTCATTCCATGTATCCCGCATGTTTCTTT 559393 25 100.0 40 ......................... ATAATTACAGGTCTTGAAGTCGCTAGTTGTTTGACGGCTT 559328 25 96.0 39 ..........G.............. TCGCTAATTCGTTAATAGCATCTTGCAATTCTTTTTCAT 559264 25 96.0 40 ..........G.............. GTACCTTTGAATCCATGTCAGCCTTGACTTGGGTAATTAT 559199 25 100.0 39 ......................... ATTCTTACCACACAGTATACCCTTGTATCGTGCTTGTAT 559135 25 96.0 39 ..........G.............. TATTTCGAGAGTGCCATGCTTGTCATACGAAAGGAAATT 559071 25 96.0 41 ..........G.............. CTTGTGATGCCAAGCCCTCTTCCCTCGAGGGTCACTTCCAG 559005 25 96.0 37 ..........G.............. AACTCTGGGTCGTCTGTCTCGTTGATACATACGTCAT 558943 25 88.0 0 ..........G...A.........A | ========== ====== ====== ====== ========================= =========================================== ================== 28 25 98.9 39 GTTGAACCCATAAAGGGATTGAAAG # Left flank : TTTCTTCGGTCCTTAATCGTTTAAGAAGTCCGCTCAATATTACGTGTTAGGTGTTCTCCTATGACCAATTCTTTGAGAAGAGCGTTACGAGAGTGAACTATTATTTTATGAAAGTATAGGAAAAAGAGTTAAGATTAACATAGTATACTATTTAAAAATATTGCTAGAACTTTATTATATAAAATGAATATAGAAAAGAGGAAATTCCCATGACTGAAATCTCGAATGAATTTTTTCCTTTTCCTGAACTTTCAGATCCGGTTTATTCATAGAATTAATAAACGAGGAAGTTCGAGTCTCCTTGCGACCAAAACGAAATCATTTCGTGAGTTTTACATTTATAAATAGGTGGATGTCTTTCAATTAGTGAAAAACATCATGCGACCGGCGTAGGACGTCTTGAGGGGAGGGGGAAAGGTCGGATGGAGAGTGGACGGAGGAGACGTAAAGTTTATAGGGGGGAAAGGAGAAGATAATTGTAGAAGTAAATAAAACATTCA # Right flank : AAATTTGGAGTAACGTTACTGATTTTATTAAAAAGACTAGTTGAACCTAGAAAGAGGTGAGGCTGTCTCGTTTTCAGGAACGCGACCTTAGCCAGTTCCATCTTAATAGGTGCTGATAGGTAAGTCGTTCTGAAACGTAAAGGTTCTCTGCTGTCAGGCAAGACTCTATTTAGGAAATATTTACCCTAAATACCTCTGTTCCCCGTTAATGGCTTGCCGGGGATACTGACGTGGATGTAACCCAGAGAGACAAGTACGTTTTCCGAGGACAGCGCCCAGACGAGCTTAAAAGTCGTTGAACAGAGAATATTTCATGGCAACTCTACCACTTCAGGACGTGATAGGGGTAGTTCTAATAATAATCGTCTCGTCTATCTCGTTATACCTTTCTGTCCAGTTGATTAAGGAGTTGAAGGGGGACTGGAAGTCAAGGGTGAACAGTGAGCCAAACGAGAGGGTCTGGTTGCTACTGGAATAGTCTAGCAGTAGGGTAGGGGTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.70,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 603839-603118 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018929.1 Sulfuracidifex tepidarius strain IC-006 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================================================================================================================================================================================== ================== 603838 25 76.0 218 .......T.....T..AG..A...A CGATAAAGTTCGAATTTCATTGCGACCGAAACGAAATCATTTCAGGAGTTTTACATTTATAAATAGGGTAGTTTCTTTCAGTTAGTGTAAAACACCATGCGACCGGGTTACGGTAAGGAAAGGAAGGGGAAAAGGGTCGAATTATGAGGTGATGGAGGAGACGTAAAATTTATAGGGGAGAAAGGAGAAAATGAGATTGAGGGTAAATAAAACCTTGA T,C [603814,603834] 603593 25 100.0 38 ......................... GAGGCTGTAACCACGACGTCGTATCTTCCCGCATTAGG 603530 25 100.0 38 ......................... TATTGCTTGCCGTAAAGATTAATGGTCATCTAATCACC 603467 25 100.0 42 ......................... GATTACATAATCACCTATTCTTACAATTGTATATCCTTTCCC 603400 25 100.0 39 ......................... AATTTAACAATTTTATTTCCTACTTTTATTTGAAGGTTT 603336 25 100.0 40 ......................... AAATATCGGATATTATACTTATCGTGATAATCGTGATTTA 603271 25 96.0 40 ..................C...... CTCCTAAACGCACCTATATGATAATCAACTTTAGACTCTG 603206 25 100.0 39 ......................... TTATTGACGTAATTTATGTCCTTCAAATAAAGGACTCTG 603142 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================================================================================================================================================================================================== ================== 9 25 96.9 62 GTTGAACCCATAACGGGATTGAAAG # Left flank : GGAGAATTCACGTCAACTCCGTAGAACTATTATGGCCTAGGGGTCACTCAAGTCCCTCGTAGTGACCCCTAAAGTCTCTCGTCAGAGTTCATGTACCCGAACCTCGCTCCAAACTCCTTCATGAGCATCATGGAGTAACTGCCAGCCCTCCAAGCTTTGGATCCTTGAGCCTTGCGATGTTCGTCCCACCAATAACCCAGCTAGACCTTACCTAGCTCTCAGGACTTGAGGAATGATATCCTTCTGCGTGAGGTTTGAGTCAGTTATATACTAGAATGTGACATAAATATGTATCAAATGCAATTTTTTTAAAAAACAGGTGTTCCTTCTAAAATTGCTGTTTACCGAGGCGAAGAGGTGTCCAAAAGACTCATCTTTGTGAATATTTTAAAGAAAGTTAAATATTATGTTCTTCTAGTTATTGAAGTAATTTCTAGGTTTCGTGTATGCAGTGAGTATTCTAGAAATGAAGAGCTTCGATGAATAGATTGTACTTAATA # Right flank : ATAACTTCAAGTTATAATTACACTTTCATGAAGTCATTGGATTCAAATTTATCAACGCTTTACTCGATTTTTGCATACTCAGCAAAATACGAAGCAATGAGAAAGATATGCGGTAGAAGTGACCTAGATAATTGTCTGGGTTACTTAACAGAGGAGTCAAACCTTTACTCCTCAATAGACCCCGCTTTAGGAGTGTTGAGTATAGGCATGGGAGTTGGAACTCCGATAGAAACCGATGAGAAATTTTTCTCTACTTTTTTGCCCATTTCGGGTTTCCTACTTAAGGTTACGGGTAAGGTGAGTAAAATGGGAGAAACTCTTAAATCCTCAATTTTTCAATAGCATATACTTTAAAGGATATAATAAAAAGTCAAAAAGTAAGTAAATACGACGTCACTGGGTTTTTAAGGGACGGGATAGACATGTTCTTCAAAACTACATCTGTAATTGAAAATAAGGATAATAGGATAGGGATTTCAGTAAATGCTACAATATCTTCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 5 612334-612823 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018929.1 Sulfuracidifex tepidarius strain IC-006 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 612334 29 96.6 38 .....................A....... GTCGTTTTTGTTTCGTTTTCGTATTTCTGTACCATAGT 612401 29 96.6 37 .....................A....... GGGTAAATATGAGGACGTGGTTTTCATAGTTCTGTAT 612467 29 100.0 37 ............................. GGGTACGTGACAGGCAAATACCCTCGTGGGTATTTGC 612533 29 100.0 36 ............................. GTCAGTAACAAGGAGGCTGACATCGGCATTATTCGT 612598 29 100.0 37 ............................. CAAATCGAGTTCTCTTCACCTCCTTCTCTTTCCCCCA 612664 29 96.6 36 ........A.................... CTAATAGCACTAACGATATCAACGAAGCTAATATAT 612729 29 96.6 37 ........A.................... CTCACATATATGATTGCAGACGTTATGGCAGTATGTG 612795 29 82.8 0 ........A.............C.C..TT | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 96.1 37 GTTTGTAGCAATCCTTAGAGGGTTTGAAA # Left flank : AGCGCTGCGTATCCTCTATCCTTCTTGTTAAAATCGAAACACTTCCTAATTAATCCAGCTTCTATAAGTCTATCTAAGATCCTGGAAAGCGTCTGAGAGTGTAACCCGGTGGCGTCTTCAATTTCACTGAACTTAACACAGGAACCCCGAGTCATTATTTCTTTTAGAACCCTGACTATCCTTTCATTTTTGAATAATGGGTTCTTTCATTTTTGAATAATGGGTTCTTTTTATCATTTCTTTTCATAAAATATAAAATAGAGGACGAGATATATATATTTTTTAAATATCTTGACTCACTAATGACGTGAGTAAGTTCTATTGATATAAATTCTTTATATTTAGGTACCATGGCTTAGTCCAAAATTTTTAAATGAAACGGTAAGTTCTAGCGTTATTTAAATCTAGGAAGCGATAGGAAGATATCATTTTTTTAGAAAATTTTTCAATGAAGCTATATAACACTTTTACAGGATAAACACGAATTTTCAGGGGAGCTC # Right flank : TTGTTCCGTGTATTTGAAGTAACCAGGGTTCCCACCACCTGCAGCGCCAGGAGTCTTTATTGGCATAAATACAGCAGCGTGAGTTAACCCCCCATGACCCCGACTAAGACAAACACTAATAAGAATAAGGAAAAGAAGATGGTCCTCTTCATGAGATGAAGAAAAACGCATCACGTTTATATGTGAGAACTAATGAAAAGGATTTACTTTTTCTTGACCTTCAATTAGTCTTCATCAGGTTTATGTACTTTAAAATGGCTTTCCTCTTCTGACCCAAATTCGTAATTATACCACTTCCTGTAAAGCGCTTTTAGACCGTAGTAGAGATCCTTATAGTTACGGATCTTGTAATTAGAGATCTTCTTGTAAAAGGAGGCAAGAAGAGTCCCAAACAAAATCGCAAATCCCGCTATCAGGGCTTCAGGCCACAGACTAGCATACCAAGGTGGTGGGATATATTTAGACTGCGTGATACACCCTGTTGGTGGTATTACACCAAA # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCAATCCTTAGAGGGTTTGAAA # Alternate repeat : GTTTGTAGCAATCCTTAGAGGATTTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 6 626396-620757 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018929.1 Sulfuracidifex tepidarius strain IC-006 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 626395 30 100.0 37 .............................. TACGGGTCACGAATGAGGGCTTAACCCTCTCTCGTAT 626328 30 100.0 37 .............................. TAAATGACCTTCGATAACTCTAGGTAGGTGCAAAAAA 626261 30 100.0 37 .............................. TCAAGGTTTCTATGTCATATTTCTGTGTCACGTTGTG 626194 30 100.0 36 .............................. GAAAAAAAACCTCTCTTTCTTCCCCCCCCCCTCATC 626128 30 100.0 36 .............................. CCCTGCTTCCCGAATACTAGGGCTGAGATAAAGCCG 626062 30 100.0 37 .............................. TATTTAGTGCGAATAAAAGTTTACAATGATACATCAA 625995 30 100.0 37 .............................. TAAACCCATATTGGTAAAATGTATTCCTCGCAAATCT 625928 30 100.0 37 .............................. CGTTCCCGGTTTTGAGGTTGTACTGATAGAAATATGT 625861 30 100.0 38 .............................. TTTTCAATTTCTCTAAAACGTCCTCAACATTTATACCT 625793 30 100.0 36 .............................. CATAAATCTTGGAAGAGTTTGATACGACGTGGTTGG 625727 30 100.0 36 .............................. TCCCTATCACTGAGTGCTGTAGCATTCGGGCAAACG 625661 30 100.0 36 .............................. TCCCTATCACTGAGTGCTGTAGCATTCGGGCAAACG 625595 30 100.0 38 .............................. ACGTTCACATTCGGATTCGAAGTAGAGAAGATAGATGA 625527 30 100.0 36 .............................. CTAAAGAATGGTAAAATTAAATGGACTAAGCTGAGG 625461 30 100.0 36 .............................. TAGATTCCCCCCACCACTTAGAACGCCAATTGATTT 625395 30 100.0 37 .............................. CATTTATTTCCCTCTCTAGTTTTTTGATCTTCTTTTC 625328 30 100.0 37 .............................. TATCGACATCTAGGATGAGTTTCAATTTGTCCCGTAT 625261 30 100.0 36 .............................. ACCTTTCTTCACATCTTCTAGGGTTATGGGTAGACT 625195 30 100.0 38 .............................. TTCCTTCAGATACAGCGTGCCTAACAGCTTCATAGCTT 625127 30 100.0 35 .............................. AAGAGGTCGCGGATGTTGTAGACGCATAGGTCATG 625062 30 100.0 36 .............................. TTTATCAGAAATCGATAACTGGAACTAATATTTATA 624996 30 100.0 37 .............................. CTAATTGCACTGTAACGGTATACGAGAGCAAAACGGA 624929 30 100.0 38 .............................. AGATAAACGTTTTTTTACCTTGCATGTTGCAATGAAAA 624861 30 100.0 35 .............................. CCTTCTAGCCATCTCCCTATAACTCGTCAGAAGAG 624796 30 100.0 38 .............................. TTCTGAATGAAGGATAATAAGAAGTTGCCTTCTGTGAG 624728 30 100.0 36 .............................. TCGGGGCGGCGGGTAAGGGTGAGAGTTTAAGCACAA 624662 30 100.0 36 .............................. TCTCATCAATAAGGCGTGCCTATGAGGAGGAAGATG 624596 30 100.0 40 .............................. ATGAGAAAAAGTTGATGCAAGTATGATCGTGTCGTTTTTC 624526 30 100.0 36 .............................. CAAACTACGGAAAACAAAACTGTGATGGAAGCAACG 624460 30 100.0 37 .............................. AAAGAGTGGAAAAAATGATTGAGCGCATAAGTGAGTT 624393 30 100.0 36 .............................. GAATCAATATCGGGATTTGCGGGAGGCGAGAGATAT 624327 30 100.0 37 .............................. CCCCGTCCTCATTGACGGCTATCCAGCCTATTGAGGA 624260 30 100.0 36 .............................. TTCTCTATTTTACATCGGGAATTATTCTCATATTCG 624194 30 100.0 37 .............................. AAAAGAAATTTACCTTTATTTTTCTTGTCTTTGACTT 624127 30 100.0 37 .............................. GACTGGGCTATCAGTAATTTGGACTCCGCCCCAGACG 624060 30 100.0 36 .............................. ATGAAAAGCCACACTAAGACTAGAATGAACGCTACT 623994 30 100.0 37 .............................. TGTGGAAGATGTTTCGTAAAAAACAACTCAGAATCTC 623927 30 100.0 38 .............................. CAATTTTTACGTAACCGGGGCTGAGAAGGTAGGCTACT 623859 30 100.0 36 .............................. ATTTTAATGTACTCATTTCACTCATGTCTTTCCCTG 623793 30 100.0 36 .............................. ATCTTCTCATATTCTTTCTGTGCATCGTCTTTTTTA 623727 30 100.0 37 .............................. AGAACAGGCTTTTGTTCCACAGTGTATCCAATATCGA 623660 30 100.0 38 .............................. AAGTACTTCCTGAAATCTACTATGGCTGTCGCAGGGGA 623592 30 100.0 37 .............................. GCATTGAAGACGTCTTCGTTATCCTGCTCTTTCTCTT 623525 30 100.0 35 .............................. GGTTCTAGGATTATCCAAATCCTTAATTGTTCATT 623460 30 100.0 36 .............................. AATAGTGAGAATCGACAAAGAACGCTGTGCCTACAT 623394 30 100.0 38 .............................. TACGACATCAACGAGAGAGTTAGGGTATGTCAGGAAAA 623326 30 100.0 37 .............................. TTTTGTCCGTGTATACGAAGAAAAACATTTTAAATAA 623259 30 100.0 36 .............................. CGGACTAGGCAGACTGTTAGATTCAGCTAAAACCAC 623193 30 100.0 37 .............................. GAATAGCTTCTTTTGTATTGGCAGGAGCGAAATAGTA 623126 30 100.0 36 .............................. AGATCTGACAGGAATGGGGCATACCATGGTCTGACA 623060 30 100.0 36 .............................. AGGGGGATAATCGCGGTATTCATCACATATACGACC 622994 30 100.0 38 .............................. TGATAGAACGAAGTGCTAAGCTCATAGTGTTCCAAAGT 622926 30 100.0 35 .............................. GCAGAAAATTCTGGAAATTTTGACGAGAGAACATA 622861 30 100.0 36 .............................. GCTACCGAAACTATGTAATCCATATCTTGAGGTTGA 622795 30 100.0 36 .............................. CAAAATCAAGAATCTAACGCATATGGCTCTCCCGGC 622729 30 100.0 36 .............................. ACGTTAGCCATGTATTCATACAGCTCATTCCAAACA 622663 30 100.0 36 .............................. ATAGGATGGATCACTTGGGCGCTAAGGCCCTTTTCT 622597 30 100.0 35 .............................. CCAGTCAGAGAAGAGTTCGTCGAGACAAATATCAA 622532 30 100.0 43 .............................. CAAACAGAAGAAATTTCAGACTTTAGTTGACGGCAACGTAGGG 622459 30 100.0 38 .............................. CTTCAAGAGGAACGCTATAATCACATCGCCATGAGTCG 622391 30 100.0 36 .............................. GTAGATATACAACCATTTTTTCCCCTAATATACTAT 622325 30 100.0 38 .............................. ATAAAATCTTTCGATTTCAGTGGAAAAAATGAAAAAGA 622257 30 100.0 39 .............................. TATATTCGGAAAAATACAGTAACGATTAGGCGACCGAAT 622188 30 100.0 37 .............................. GTGAATAAGTCATCCATTCTAGAGGCGCACCAAATAG 622121 30 100.0 36 .............................. CTGTAATGCTGTCCGCTACTGCCTGTATGTTCTCCG 622055 30 100.0 35 .............................. TAAGTTAGTGCGATTTCAGAAAGCTCTTTCTTTAA 621990 30 100.0 38 .............................. TAATCTTCAGTCAGGCACAAATGAGATTCCAGTAGTGT 621922 30 100.0 38 .............................. GTAGAAGTGCTAGATATATTGCTCATACGAATATCTGT 621854 30 100.0 37 .............................. AAGCAGTTCTCAAAATATCTGAGAAAGGTGGATGAGA 621787 30 100.0 39 .............................. GTGGTAGGAGGAGAGGAACACCCTGAGGAGCAAGTTGAG 621718 30 100.0 38 .............................. TAGAACTTTCAATGGAAAGGATAAAGTTTGAGGATAAG 621650 30 96.7 36 .......A...................... CATTTTCGTTTTCTTTTTTTCCTTCGTCCATAACCA 621584 30 100.0 36 .............................. TGGTTTCTTTCTATCTTTCATACCCATTACTACTCT 621518 30 100.0 36 .............................. CTTTTGTTCTTCTTCTAATTTCTTTTGCTTTGGAAT 621452 30 100.0 38 .............................. TGATAGACTTTATCCCAACCGAACAAGCTGGAACGAGT 621384 30 100.0 37 .............................. ATATCAGGGTCTAAGAAAGTCATTTTCATCACCTGTG 621317 30 100.0 37 .............................. CGAAAGAGAAATCAGTAATTTTACCTATTTCTACCGG 621250 30 100.0 36 .............................. TGGGTTACTGCGGTTACTCTTCACTCGGTGCTTCGT 621184 30 100.0 36 .............................. GCTTAAGCCCGTCAGTTGCCTGACCCGTTCGATTTC 621118 30 96.7 37 .....G........................ ATCATAATCCTTTCAGCTGTTTCGCCTTCACCTATTG 621051 30 100.0 36 .............................. TAGTTCAACCATGGCATTGAAAACGCTGCGAAGTAT 620985 30 100.0 36 .............................. TGGCGTGCCTCACTCCCTCGTAACTCCTTCCCGTCC 620919 30 100.0 36 .............................. AACGCCCCGTAATATTGTATTTGAACTCGGCTTCCG 620853 30 100.0 37 .............................. TATACGTACACACACAGTATACCGTCGGGTAATGTAG 620786 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 85 30 99.9 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : ATATAATAATGAATATTATATATAATGAATATTCAAGATCACGCAAGAAATTAAAGAAGTTGAATCAGGGTTCGATATAAGTATGAATCACCGTTGAGTTATGTCAAGGATTACAGACTATGGAAGAAAAGCGGATACATGGCGTTAATACTTCATCTTAAAACTGCAATTAAGTGTACGTATTTCGTCTTTTTTGATCTCCTTTATTAATCTAACAGCCCTTCTTCTTATATCCAATTTGTTGGTAATGTCGGTTGCAACTCTTGTCAATTCATGACTCTCCATAAGTCCGATTTAAAAAATCTTAAAAAAGTATTATTTTCAGATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAGAACGAAATATGTTTTTCAAAACATATTATTTTTCACGTAAAACTCCCTCGGCAGTGAAAGGGAATTTGATGGTGCGACTTCACTGCCGAATTCAGAGTAACGTTTTTTAGGGAGTTTTTACATAATATTAAGCAGG # Right flank : TCAAATCTTCCTGTTGAGCTCTTCCCCCGTCATGGCTACCCTTTACGGACTTCTGGCTACCTTATTTGGCATAATTAACGTGCTTTTTGCAGTAGGTATCTTTGGCATGTTAATGGGAATTCCATCTTTCTTCGTAATCAAGAAATTCAAAGGAATGAAAGAAGAGGATGTACAAAAATTTATTGCCTGATTTGAAAGAAAATGGAAAACTTTTTTCATTATCTAGAAGTTTAAGTATAAAAATCATGATTTTTTAAAGTGGCTGAGGATGATGAGATAAAAGTCGCTTTTCGTGAAGAGTAGTATAAGTAGTCTTGTTATAAAATTTTGTTAACAATAAATAAGGGAATAATTCTTAGACCTAGGCTAAAATAGCTAGGTCAACACCCTCGGTAATGGGTGAACTCAAGACATTATGGAGAGTAAACCTCTGTGCTTCTGTTAATGGGTATCAAAGAACGGTTTCTTCCCCAGAACGTCCCTCATAAGTGAAGGGTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 7 651297-645460 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018929.1 Sulfuracidifex tepidarius strain IC-006 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 651296 30 100.0 38 .............................. ACGACTATGTTTCAATCAGTGGTTTCAGTGACGCTGAG 651228 30 100.0 38 .............................. CTTGCTCCACGCCCTGGAAGGGCGAGGCTTTCAGTTCA 651160 30 100.0 36 .............................. TCAATGACAGTTCTAACAAAGTACATGACACGATTT 651094 30 100.0 36 .............................. ATGATCCCGACAACGGACAATACCCCCAGTCCCCTC 651028 30 100.0 36 .............................. TCATCTCAAAGACAAGATAGAAATAATATCAAATAA 650962 30 100.0 37 .............................. TAAAGGCGGGAACGTGGTTCCTGAGGAAGAGATAATG 650895 30 100.0 35 .............................. ATAGGATGGCGGGTAATTAAACACGCCATTTAGTA 650830 30 100.0 34 .............................. CTAGTCGGATCTCTATTCGAAATTGTGATTGCCA 650766 30 100.0 36 .............................. AACGTTATGACCCTCACTGACCTGCCACCTCGTTCC 650700 30 100.0 35 .............................. TGGTGTGAATGTCTATGGCCCTCTCGAGCCTGAGG 650635 30 100.0 36 .............................. ATGTTTCACTCATCCACCTCACCCTCCTCATAGTCG 650569 30 100.0 38 .............................. TAACTTTTTCAAAAATAAATTCGTAGCTCTTATGTCTG 650501 30 100.0 35 .............................. CATTTCCAGAAGCACGATTTATTCAACTTATTTTA 650436 30 100.0 37 .............................. GAAAAAGCAGGGTTGAAGGTGAAGGACGTAATGTTCT 650369 30 100.0 38 .............................. CCTTTTCGAATACCTTTTCGAAATCGCATGTCATATGA 650301 30 100.0 37 .............................. GAATAAGAAAAGGAGGGAATGTTTGCATCCATAGTGC 650234 30 100.0 37 .............................. AGGTAAAAGCTAACTTCGTTTCACCTGCAACTTTCAC 650167 30 100.0 37 .............................. AGACAGGAGAAAGGAGAAGAAACGCATTCGTGGAATG 650100 30 100.0 37 .............................. CTTATTATTTCTGCTCATTTTTGCACCTACCCAATAC 650033 30 100.0 37 .............................. TAGAGAGGACGACGACCATACCGTGAACGAATGCTAT 649966 30 100.0 37 .............................. ACAATATAACCTTCTTCTTCGGGATCTGTCCCGAAGC 649899 30 100.0 38 .............................. TATACTAGTGTGAGAAACTAGTAGATAGGTGAAAAAAG 649831 30 100.0 35 .............................. AGTATGTCTTCAACGGCGATCATTCTGACACATAT 649766 30 100.0 36 .............................. CACCTACCCAATACTTATCGAGGTCATTTATAAATA 649700 30 100.0 36 .............................. TTCTAAAAAAGTAAGGATTTATTTCGTTCTCATGTT 649634 30 100.0 36 .............................. CTTTCATAAGTACTGCTAGTCATGGATTCGCTCTCA 649568 30 100.0 37 .............................. CTATTTCCTCATCACTAACGTCTTTATTCAATTCGAT 649501 30 100.0 36 .............................. TTTTTCTCATAGTTCGGTACCGAATTTCTTTTTCTA 649435 30 100.0 37 .............................. ATCGAAAGGATTAGTGAATTCAACGGCATTAAAAGAG 649368 30 100.0 36 .............................. CAGCATAGTGGTACCTAAAAAATGGGGGGACTCCGT 649302 30 100.0 35 .............................. GAGAAGAACATAGATTCGATAAGACAAAAATGGGA 649237 30 100.0 37 .............................. ATGAACCTCACCCGGTGTCTTAAACTGACTCTCGTAT 649170 30 100.0 35 .............................. CTTACCAAAGTGAAAGTAGTTCCGGTTCATGTGGT 649105 30 100.0 36 .............................. TCTTCGTATTCGCGCCATTTCCTGAATATTATTTCG 649039 30 100.0 36 .............................. AATCTACTCCGTCGCCATGTTCACGGTGAAGTACAA 648973 30 100.0 37 .............................. ATACTAACATAGGTTCTGCTAATTTCAATAATGGAGC 648906 30 100.0 37 .............................. TTACATTGCTTGGGCCGTTTGTACTATCGATTAAAGC 648839 30 100.0 36 .............................. AAATACCAAGGTATCTCATGCCCTCTCACTTTACTG 648773 30 100.0 36 .............................. CCAAGAATATACATAGTAGATATAGCTGTAATACCA 648707 30 100.0 37 .............................. GGGCTAATGCAAAGTAAGGAATATAGTAAAGCGGAAT 648640 30 100.0 38 .............................. TGTGCAAGATGTTTCATAAAGGCGAACAGCCAGGAGAT 648572 30 100.0 36 .............................. GTAGAGAGCTGAAGCAAAAATATCCAGACAGGGCAT 648506 30 100.0 36 .............................. ATTTTTTAACGCCTAATTCCTCATGAGGAAGTATCT 648440 30 100.0 38 .............................. AAAGATCTGGAAACAATAAGTCCAAATTGATGCCATAC 648372 30 100.0 38 .............................. CATTTCACTGACTTCGTTGCCCGCACTCTTACCCACGT 648304 30 100.0 38 .............................. ATCTCGATCAGGGCGATCCAACGTTTCAGCCTCGGGTA 648236 30 100.0 38 .............................. AAAGGAATGGAGCAAGACGTTATAGAAGAATTACACTT 648168 30 100.0 38 .............................. TTCTTTTCCCCCTCCTCCATCATGGCAGTTAGCCACGT 648100 30 100.0 37 .............................. CAAGAGACAATTAGTATACGTAATAAACAGTTCTTCG 648033 30 100.0 40 .............................. CAAACAAGGGCTCACTCTCACGTGAATGTACGTAGGACTA 647963 30 100.0 38 .............................. GCTCTGAGACAGCGTAAGAAGAGAGAGGAACAAAGCCA 647895 30 100.0 36 .............................. GTTGTCGTATTCTTTCTATTTCTGAAACTAACTTCT 647829 30 100.0 37 .............................. ATTGCGTTCTCAACTAGTTCTTTTTGCCATTTGGAGA 647762 30 100.0 35 .............................. ATGAGAAATTAACGCCGGAGTGTGTAGAAGATGCA 647697 30 100.0 38 .............................. TAATCTTCAATCAGGGACGAATAAGATTCCGGTGATAG 647629 30 100.0 34 .............................. AATGTACAAGCCAGAAAAGTCTAACGGTACTTAT 647565 30 100.0 37 .............................. AATGCTTTTCTCCTACTTTTTCATATGCTAACAACAC 647498 30 100.0 38 .............................. AGGATGAGAACGGAGAGCTAAGGAGAGACAGGGAGGAG 647430 30 100.0 36 .............................. TTTCTGGGTCAACCAAGAACCCCTCATTGTTCACTA 647364 30 100.0 36 .............................. ACTTCGTACTTTAGTTGTTACGCCAATTTTCTTCTT 647298 30 100.0 40 .............................. ACCTAACTGGTCTATGTTGCCTTCGATGTCCTTTGAAATC 647228 30 100.0 36 .............................. CCATGAGGGCTTTAATCTTCTCAGCGTTACGCCCAC 647162 30 100.0 36 .............................. ATGAAATCATCTAGATCGTTTTTTTCTGACAATTTA 647096 30 100.0 39 .............................. CTCTGATAGCGTTTATATTATTCTCGTTTTTCTCATTTT 647027 30 100.0 38 .............................. CCTCAGAATAAAAGTCTAAAAACCTATTTCTAATACTA 646959 30 100.0 36 .............................. TACGGCACTTGAAACGGCAATTTATCCTTTAACACG 646893 30 100.0 38 .............................. GACTAAGCTGTAGAACATCCACCGCTCACTTGCCACGA 646825 30 100.0 37 .............................. ACAAAGATCCTAGAAGTAACTGTGCCTGTAAAGAGGG 646758 30 100.0 38 .............................. ACAGTCCTACAGCGTAAAGTATGAAAGCGAACGGCATG 646690 30 100.0 37 .............................. ACTCAGGTAACAAAAATTACCTGAGTAACCATAAGAC 646623 30 100.0 35 .............................. AAAGGGGTAAAAAAAGGTGTAGAAAAAGAAATTCG 646558 30 100.0 36 .............................. CTTTACCGTCTTTCTTTACTTGGGCTCTCCATGCGG 646492 30 100.0 36 .............................. GTCGCAGGGATTTCTTCTAGCGCATCTACCAGCCTA 646426 30 100.0 36 .............................. GATACGAGACCTGAGACCAAACGCATCTTTGTTCTG 646360 30 100.0 35 .............................. AATATTAGTGAATCATTTATGATTCATAGGTGAAT 646295 30 100.0 37 .............................. TCTGCGTAATTTCGTCAATCCTCTGGGCCCGCTCTGT 646228 30 100.0 36 .............................. AGAATGACTTAACAAGTATTATTTGTGACAGGACTC 646162 30 100.0 39 .............................. AAGGAGTACTCTCTCATCACTGCTACCCTGATAGCCCCG 646093 30 100.0 36 .............................. TGACGATCTTCTTCTTCGGGATCTGTCCCGAAGCTT 646027 30 100.0 36 .............................. TAGAGTTCAATATTACAGGGCCCACGAATGTGTACG 645961 30 100.0 38 .............................. TTTGCTGCGGAGGCGTAGCCTGTGACGGTGCTGCTGAA 645893 30 100.0 36 .............................. TTCTCCGCTATGATTTCCCAAGCCTTCGCAAAGGAG 645827 30 100.0 38 .............................. TCATCTGCAATTCGTCAAAGTAGCGATTGGCAACATAG 645759 30 100.0 36 .............................. TGGGTTTCCTTGTGTTGCCACTTTTTTTCACCTATC 645693 30 100.0 39 .............................. CCGAACAAGTCGCACTGAGCATGCTCGGAGCTGCTGAGA 645624 30 100.0 38 .............................. GCAAAAGAGAAGGCAAAAGAGAATCAAGCCCCCGCAAA 645556 30 100.0 37 .............................. AATGATTCGGATCAAGTCAATAGTCTATTCGTAGCGG 645489 30 93.3 0 ............................CT | ========== ====== ====== ====== ============================== ======================================== ================== 88 30 99.9 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : ATTTAATAATGAGAGGATAGAGATTAAATAATTAGCTATAGATCCGAAGTCTTCCTCAATGCTAAATAGATAAAATTTATTTTATAACACTACTAGATGAAAATATTTAAGCCACAGGAATTCCCGTAAACTGCCTTCCTAGTTCAGGGAAGCTGTTAAGTCATTTAGAAAGATGGGACATGACACTAAATAACCGAAATTGAACAACCTCATTCCCAAGGGCGTGATAGTTCAATAAACCTCTCTTTTAGAGGAAATTATAAATTAATAAAGTTAAAAGAGATGTTGTAATTATGTATTTATGCATCTTTATTGTTTATTTCAGATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAGAACGAAATATGTTTTTCAAAACATATTATTTTTCACGTAAAACTCCCTCGGCAGTGAAAGGGAAGTTGATGGTGCGACTTCACTGCCGAATTCAGAGTAACGTTTTTTAGGGGGTTTTTACATAATATTAAGCAGG # Right flank : GGAAGAGGAAAGACAGTGAAAAGGAAGCGCTGTCCTGAGTGTATTCCTAGCAGGCAATATTTGCAGCTCTGAACCCGATACCGACACATACGCTGGACAAAGCCACGACTCTGAATCCAAGTCTTCGCCCGGGGAAGAGGAGGTGGTCTCTGTGGTCACTGCTATAAGGGTTACATATGCGGGCAGCTGATACTTAAAGGCCCATAGCTTGTAAATAGCCAGAAGTCAAAACCGCAACAAGGTTCCAACTTAATATAAAGACAGTTCCTCCAGCGAAAGGCAAGAGCCCTATCCACTTGTATGCATTCACTTTTAAGTAATCAAAGAGTCTGGTGAACCAATAGATCCCGCTCAGAGATAGCAACTTCACCCCAGTCAATACCATGAAGACGTTCAGGAAAGCCGTATTACCTAATATCAAGGGGTTGTAGTCACACTGCAATATCTCTAGGTGAGAAAAGAAGAGGGTCTCTGCGTAATCTATTAAATTGCCTACTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 8 2058463-2056524 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018929.1 Sulfuracidifex tepidarius strain IC-006 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 2058462 25 100.0 37 ......................... GAGAACTTGCCATAGAGGAGTGTGGCTTCTCAGATAC 2058400 25 100.0 36 ......................... AATTGCGGGATTTCCCCCGCGGAGGTGAAAAAATTC 2058339 25 100.0 39 ......................... ACTCCTCCTACTACTCCTCCTACTCCTACTCCTACTACT 2058275 25 100.0 39 ......................... CGTATCTGTAATGGCAATGGCAATACTGCGATAATAGCG 2058211 25 100.0 39 ......................... CTAACACAATACCCTTGCTCGTTCCTGTCTAGAGGAATC 2058147 25 100.0 40 ......................... CCCTGTAAAATTTTCCCTACCAATTCCTTATATGAGACGA 2058082 25 100.0 37 ......................... TATTAGTATTTGATGATTATATATAACCATGGACGTA 2058020 25 100.0 41 ......................... GGGGTGATATGAAAAGTCCCCTCAAGTTTGAGGGAGGGTTT 2057954 25 100.0 40 ......................... ATAAATGACATAAAAACTACAGAGGTCACGAAATCAATAA 2057889 25 100.0 40 ......................... CGGTCATAGCGGACGGCACCACATTGATGCCGTCCTTTCG 2057824 25 100.0 38 ......................... CAGTTTCCCTGTCCCATCCAAAGACATAAGAGTATTCA 2057761 25 100.0 37 ......................... TGACAGTGTGACACATGAAAAGTATATGACATGTCTA 2057699 25 100.0 39 ......................... TTTATTGCGACTCTGTTGAGCGGAACGCTCACGCCTAGG 2057635 25 100.0 36 ......................... GCAACGTCGTCAGCAATATAGCTTATTTCAGTCTCG 2057574 25 100.0 40 ......................... ATTTGTTGTTGTAGTTCATCAGCTCTAACGGGAAAACTGA 2057509 25 100.0 36 ......................... TAGGTCTCCTCTTAGGTGCTGTCTACGGTCAAGCTA 2057448 25 100.0 38 ......................... AGTATAAGCAAATATCGGGAAGAGCAGGAAGACAGAGA 2057385 25 100.0 39 ......................... TTAAGAAGTGGTTGTAGATACTCAGTTCATCTATTTCTT 2057321 25 100.0 39 ......................... GTATGATAATAATTTAAGTCGTCTTTTTTTCATGCTGAA 2057257 25 100.0 39 ......................... GATTACCCAATCACCTATTCGTACAATTGTATATCCTTT 2057193 25 100.0 40 ......................... TCTTTATGTATTTTTTCAGGAATTTATAGCCTTCATATAA 2057128 25 100.0 40 ......................... ATTTTAATGTATGTATCGGTAGATAATTGTTTTACATAAT 2057063 25 100.0 44 ......................... TGGTAAACGATATCAGGCACTATTTTCAGGGCATGCCTACCGGT 2056994 25 100.0 41 ......................... AAATAATAGAAGTATGTTGTCGCTTTATTCAGGTTGTTCAG 2056928 25 100.0 40 ......................... TATAACATCAAGAGATATCTTTTTCATTTCCGTATTAAAT 2056863 25 100.0 37 ......................... CTGTGGAATAAATAACATTCATCAAAGTTTTTGCATA 2056801 25 100.0 35 ......................... CATATAGTTTTTATATCAACTTCTTGTTGAAGTAG 2056741 25 100.0 39 ......................... TGACAGCCCTAATTTTTTTTCCATTGAACCCATATACAT 2056677 25 100.0 39 ......................... TCCACTTCTCTATTCTCTTTATCACGAATCTGACGGCGT 2056613 25 100.0 40 ......................... ATGATAAATTGATAGCGTATCATCCTGAACACGGAATTCA 2056548 25 96.0 0 ........................A | ========== ====== ====== ====== ========================= ============================================ ================== 31 25 99.9 39 GTTGAACCCATAACGGGATTGAAAG # Left flank : AGCGAAAATTTCAACTATTTTTCAATCTATTAAAATTGTAAATCTTACAGTATTAAATGTAAAATCATTAATATTAGATTTTGTATTAGATATTTAGTTTTTAGTAAATTTTTTAATTATTTATCTAATTTTATATTTCTTATATATGTAGATTATTCTTTTTCTAATTTTACATATACAAAACTTTTAAGGATCTATGATTTTGTAAAGGTCTTATTAGTATGTACCTATTTTTTAATTAAGTTATATCTAATAGTTCGATCTTTCCATGGAGATAATAAACGATGAAGTTCGAGTCTCCTTGCGACCGAAACGAAATCCTTAGATTAGTTTTACATTTATAAATAGGGTAGTTTCTTTCAGTTAGTGTAAAACACCATGCGACCGGGTTACGGTAAGGAAAGGAAGGGGAAAAGGGTCGAATTGTGAGGTAATGGAGGAGACGTAAAATTTATAGGGGAGAAAGGAGAAGATGAAGATAGAGATAAATAAAACCTTCA # Right flank : TTAGTACCAATTTCTAGTTAATTTTTACCTAATTAAGTTTAATTTAAAATTATAATAAAAATCATAAAAGATTATCATGTTTGAAGGTCTCAATGAAATGGTATTACCAATTTATAATCCCCTTCATCAAGACATAATTATGGGAGGAGGCACTATAGCCTTCGTAAAAGATTGGGGAGCTTTCTTACACGTTAAAGACAACATGATAGTTTGCTCCTTAAAAGGGAAGGATATGTGGAGCGTCTCTCCAGTTGAGCTATCTTCCATCGTTTTTCTCGTCACTGGTTCGGTTTCTTCTGAGGTAATTGCACTAGCTAACGAGTACGGGATAGACCTAGTCTTCTTCAGGAAAGGAGAGCCCGTAGCTAAGGTGATACCCGCAAGATACGGCGGTTCCATGAAGGTTTGGCTATCTCAACTTAAGGCGTGGAAGAGTTCTCGGGTAAAGTATGCCTCCGTCTTCGTCAGAGGGAAGTTGAGGAACCAAAGGGTGGTGCTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 9 2066649-2068777 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018929.1 Sulfuracidifex tepidarius strain IC-006 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 2066649 25 100.0 41 ......................... GTAGAATATGCATATGCCGTGGTTCAACTGCCACGGCAAAT 2066715 25 100.0 39 ......................... AGGTATTATCACTGTCTTCCCTAACGCTAGCATCTCAAG 2066779 25 100.0 40 ......................... AAACAATATAATGCCTTGTATGTATGGCAACAAATACAAT 2066844 25 100.0 37 ......................... TAAAAAATAAAACTTCTTAGAACGTATCCGTGCTCTT 2066906 25 100.0 38 ......................... GAAAAGCGATACGTAGTGTTGTGTCAACACGCGGGTCG 2066969 25 100.0 40 ......................... CAAAAATAAAAATACCAAATCTCACAATCCCATCATCTCC 2067034 25 100.0 39 ......................... ATACCTAACTTAGGGCATAAGTCGTTAAGACCCGATAGA 2067098 25 100.0 39 ......................... TGAAATTGTTTTAGCAACGTGGTGTTAAGTGTCATGTAA 2067162 25 100.0 39 ......................... TTTCCAGCTCACTCTCGAGTTGCAACGCTTTGACATATG 2067226 25 100.0 41 ......................... TTGTCATAATACTCAGGTAGCTTTTCATATTTATTGATGAG 2067292 25 100.0 40 ......................... ATGTATTTGTCAAGATTTAGTTTATCTAACTTGTTTGCAA 2067357 25 100.0 39 ......................... ACAGAACCGTTATTCAGGATAAAGTACTGGTCTCCACCC 2067421 25 100.0 38 ......................... ATTCCATGCTACCCCTGGGTAGGGCTGTAGCACATTCA 2067484 25 100.0 39 ......................... TCTGGAACTCATTTATAGCTTCAATATCCAAATCGTTAT 2067548 25 100.0 40 ......................... CTCATAGCCGGAGAACATATGATAATCATCGGTCCTCCGG 2067613 25 100.0 41 ......................... TTAAATAGTTCATTTCCGACTGAATCAGTATTTGTATCCAT 2067679 25 100.0 39 ......................... ATTATCAGTGTATTGGTATTCGAATACGCTGTTAAGTTC 2067743 25 100.0 38 ......................... TGTTCCAAGTACCACCAAATTCATCCATGACAATACCA 2067806 25 100.0 41 ......................... ACGGTCAAGCTAGTGCCGATTCTTATCTCGCCTCCTCGGTA 2067872 25 100.0 38 ......................... AGTTAGTCAATCCGAAATATATTTTTAATATTACAAAT 2067935 25 100.0 39 ......................... TTAATCAGTTTGTTAATATGAAAATTAAGTAAATTATAC 2067999 25 100.0 38 ......................... TGATATATTCCGACATAGAGCATTACCGTCATATTTTA 2068062 25 100.0 39 ......................... GTGTGTCAAAAGATGTCATGTTTTCTTGATTTTGATTTT 2068126 25 100.0 39 ......................... CGTCCAGCTCGGCTCGTGCGGGGGATAGGCGTACACCAT 2068190 25 100.0 36 ......................... CAGTTTATGCGGGTAAAAGCGGTTTCCTGATATCTA 2068251 25 100.0 38 ......................... GATAGAAGCCTCTTCGGCTTCTATCGTGTATTTATCCC 2068314 25 100.0 35 ......................... TTAGCTATACCGTATCTTTGTCTGTCGATATATTT 2068374 25 100.0 34 ......................... TAAGGTAGGAATACGCCTTAGCCCCCCGTATCCC 2068433 25 100.0 38 ......................... ATACTTACTTTGATTTGGGTTTGGGTTTGGGTCGCCAT 2068496 25 100.0 39 ......................... TTTTCTGACACTCATCATGACAGTGAGGGGCATGACAGC 2068560 25 100.0 39 ......................... TCTCCTTCTCTCATATATTGTTTTGGATTTTACTTTTTC 2068624 25 100.0 38 ......................... TTCAATGAAATAGGTCCGGTTAACGTTACCCTTGATTC 2068687 25 100.0 41 ......................... TACTCTTCCAGGGTATTGATCAGTTCGTTGAGTTCTTTCTT 2068753 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 34 25 100.0 39 GTTGAACCCATAACGGGATTGAAAG # Left flank : ACAGAGTGTAACTTTTATTTAAAAAAATATATATGTAAATAAATATAAAAATATTAAGTTTTATTATTCCTTTACTAAAATGAGATACAGATATCTTAATGTAATTCAGTAGCCTTTACGATTCTCTTAATCCATCTATTCTTATAAAGTATTTTAAAGCAAGATTTGTATTTTATTTTAAGTACAAGTTATAAAATGAGAAGAGAAAACTATTTTATTATGATTTAAATCTTTATATGATTAAAAGATTGGTAAGTTCGATCTTTCCATGGAGATAATAAACGATGAAGTTCGAGTCTCCTTGCGACCGAAACGAAATTCTTAGATTAGTTTTACATTTATAAATAGGGTGGTTTCTTTCAGTTAGTGTAAAACACCATGCGACCGGGTTACGGTAAGGAAAGGAAGGGGAGAAGGGTCGAATTGTGAGGTAATGGAGGAGACGTAAAATTTATAGGGGAGAAAGGAGAAGATGAAGATAGAGATAAATAAAACCTTCA # Right flank : GCTTCGCTATTTCCTCTCTACCTATGACAAACCCTCTTAGGATAGACTCATAACGGAATTTTAGCAAGATTTAGTCTAAGTTTGCGATTCACGTCCATTTTATAAAAATCAAGATATATAAAAGAACCAAAAATAATAATAGTTATTAAACTCCTTTATTTCAAGTATGTATATGCAAAAGTATAATGAGTATAAGGAGGGAGACGAGTTAGCAAAAGTCTTGGCCCTTCTTCTATATGTTCAGAGAGAATATTCCTATATTGATAAATTATCTCAGTCAGCGTCCAAGGATCTAGCATTGTACCACACGAGGGAAGCGTTGAGGGACTATAACTCTCTCTTGAACAGTGGGAAGATCAACGATCCCGAGGCCATCAACCTATCGAAAAGCATCAGATTCGACGCAGTTAATAAGGAGCTTGCCTTTATCAGGGCCATTAATTCTCTACCAGAATTAAGGGAGACCGTATCATATATTTCCGCCTCCGCATTAACCTTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 10 2180420-2185401 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018929.1 Sulfuracidifex tepidarius strain IC-006 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2180420 30 100.0 37 .............................. GTAGGGATGGATCCAGAGAATGGATATGTGGAAGGCG 2180487 30 100.0 38 .............................. CTTCATTTATGCTGTGGGACTTCTTTGACAGAAAGTAA 2180555 30 100.0 35 .............................. TGTCAATGATTTGGGGCTTCATGCCCCTTGTCAAG 2180620 30 100.0 37 .............................. TAGTTCCCGAAAAAGGGGTACACTGTTTTCGCTTTCC 2180687 30 100.0 37 .............................. AAAGAGCTAAGAATAAAAGAGATTAAGCTTTTCTTGA 2180754 30 100.0 38 .............................. TTCCGTCTTCTTCTCTAAGGATCATCAATATTTTCCCA 2180822 30 100.0 36 .............................. CTTTTTCTCTTGTTTCGCTTTTTCTATCTTCTCTTG 2180888 30 100.0 35 .............................. CTAACATCGTTTTCGCGGTTCCGGGCGGGCCGATA 2180953 30 100.0 37 .............................. GGAAAAACGTCCACAAATTCATTCAATCCTGCAGATT 2181020 30 100.0 36 .............................. AGAACTAGGTGCAAAGTAATACCCAGCAAAGCCTGG 2181086 30 100.0 36 .............................. TGAAAGTCAGGTAGTAGACCTGGTAAATTCTGTATT 2181152 30 100.0 36 .............................. GATAGAAGTTGTAAGGTTTGTTCCTCAATGACGACG 2181218 30 100.0 37 .............................. AGCCATTTCGTTATCTTATCCAGCCCGCTTATTGTAG 2181285 30 100.0 38 .............................. AAGATCTTAGACGGCGAGCCCGAAAAGGCTGGAGCTCT 2181353 30 100.0 36 .............................. CATGGTGAATTAGATGGTTGGTAGAGAGATCATCAT 2181419 30 100.0 39 .............................. TGTCTTCTACAATTATGTCGTTGTACTCACTTATCTCCT 2181488 30 100.0 40 .............................. CTAACACAAACGCCTAAGTTCCAAAACGTGTCCATTACGG 2181558 30 100.0 37 .............................. TTCAAAATTTGAGGGAGAAAAAAGAGAGAGATGTGAC 2181625 30 100.0 38 .............................. TGAAATAACTACTAGTGACATGTACCAATTACAACTTA 2181693 30 100.0 37 .............................. TATATACCGAGGTCGGAAAGGGATAACGTAATTAAAG 2181760 30 100.0 37 .............................. GCCGAAGGCACCATCATTACAAGTGAAAAAGAGTTAG 2181827 30 100.0 37 .............................. TCTTTTGTTCATGATAAACCCGACGTGCCCATTTTCG 2181894 30 100.0 36 .............................. CAAAGTCCTCGTTAATTTTTTTGTCTAACTCTTCCC 2181960 30 100.0 37 .............................. GAATCCCTTGTCCCCTGCCTGGGCTGTTCGTCAGAAA 2182027 30 100.0 35 .............................. CCGGGGTAGACACATCAAAAATCGGTATCAATGAG 2182092 30 100.0 40 .............................. TGTTCAAGTGCCAAAGCGGGCTCATCGTTTTCCCACCCGT 2182162 30 100.0 38 .............................. CTTCTCTCATTACCTCATTTATATCGCATACCATACTA 2182230 30 100.0 36 .............................. CGGGACTGGAATAATTCTAGCTAGTCAGCGAATTTA 2182296 30 100.0 37 .............................. TGAACGCTGAAATACAAAAAAAGTTAGATAAGATGCA 2182363 30 100.0 37 .............................. AACACTTCCCAAGCTCTCTTGTTGAATGAGGATTTCA 2182430 30 100.0 39 .............................. GACGGGGGGAAAAGTATAGATCGTGATATAGAAATTGGA 2182499 30 100.0 38 .............................. TCTGTCAATCAATGGGAGACAAAACCCGCACTGGGCGA 2182567 30 100.0 36 .............................. AGGGGGTGTCTAGAATGAGGGTCATCACGTTTAAAG 2182633 30 100.0 38 .............................. TTCCTTGATTCCGAACACGACATCCCCGCTGATATCTA 2182701 30 100.0 36 .............................. CGCAATATACCGGATCCTTTTAAGAAATCTAGCGAA 2182767 30 100.0 37 .............................. TAGGTCATCCCAGTATACTTCTTCCCTCTCTTGTCCA 2182834 30 100.0 37 .............................. TACGACAATGATATCTCCACACATATTGTCATTATCT 2182901 30 100.0 36 .............................. AACACCGTAAGCGGGAAAGCATATTACTCAACTATT 2182967 30 100.0 35 .............................. TCGATGACGCAATAGAGGAAATGGAAGAAGATCAA 2183032 30 100.0 39 .............................. TATTGAATGAAGCACCTGTAAAAGCGTCATACGTTCCAT 2183101 30 100.0 36 .............................. TCTTCTACGCGTTCCTGTGCTAATTTGCTATCTACA 2183167 30 100.0 37 .............................. CTTCATGTCCCACGGCGGATATAAACCCGCCTGATAG 2183234 30 100.0 36 .............................. GAGGGGATAAAATGGGAAAAACGTATCTCGTCAACG 2183300 30 100.0 37 .............................. AAAAACTAGGGAAAAAGTTGAATGTCTTTTTAGTTGA 2183367 30 100.0 36 .............................. GGTAAAACGCTATAGACCCTCCGCTGACGCCACCGT 2183433 30 100.0 38 .............................. CTACTACCATAAGAAGAAGCATCATCACGGGTGACAGT 2183501 30 100.0 38 .............................. TCAATAAAAAATGACCCCTGTCGGGGTCATGGGGTATA 2183569 30 100.0 37 .............................. TATGTCTTCTCGTTTGACAAAGGTTGGCAAACTATGT 2183636 30 100.0 36 .............................. CTCCTTTCCATAGTGCTAGACCGTTACCCGTATAAA 2183702 30 100.0 38 .............................. CTACTACCATAAGAAGAAGCATCATCACGGGTGACAGT 2183770 30 100.0 38 .............................. TCAATAAAAAATGACCCCTGTCGGGGTCATGGGGTATA 2183838 30 100.0 37 .............................. TATGTCTTCTCGTTTGACAAAGGTTGGCAAACTATGT 2183905 30 100.0 36 .............................. CTCCTTTCCATAGTGCTAGACCGTTACCCGTATAAA 2183971 30 100.0 35 .............................. CAAAGCTCTTTGTATTTGCTATTTCGGTATTTGCA 2184036 30 100.0 38 .............................. CGGATAATGAGATAAATCAGGTGAATCTCATACAGCAA 2184104 30 100.0 37 .............................. GATTTCGGTGAAAACACTAAAATATATTCAACATGGG 2184171 30 100.0 37 .............................. TCCTGCTCTTCATTAGACCTATTGTCTTCAACGTAAA 2184238 30 100.0 35 .............................. AGTAGTTGAGAATTGACTAGATTCGATTAGTTCGT 2184303 30 100.0 36 .............................. TGTAAGTGTGGAAGATAGACCGAATCTTCTTCTAGC 2184369 30 100.0 36 .............................. TATCCCCGCACCTTGAATTCTGACTTCCTCGCCGCC 2184435 30 100.0 38 .............................. TTTTTAGGGGGGCTTACACACGTTCCTTCCTCCACGTG 2184503 30 100.0 37 .............................. GAGGAGTAATAGACGTAGCTTCCTTAACGGGGATCCT 2184570 30 100.0 36 .............................. TCATCACAATCATGTTGGAAATTAAACCACTGTTAA 2184636 30 100.0 38 .............................. TATGCTATTTCTTTCTTCTCCTTCTTCTCCATCTTCTT 2184704 30 100.0 38 .............................. ATAATGATACCGACAACCTAACTCGTTTAATAATAAGG 2184772 30 100.0 36 .............................. CAATTTAACACGGCACAACCCATAACCATAAACCTG 2184838 30 100.0 38 .............................. TCTTAAGCCCTTTCTGAAATCCTCTAAGTTTGAGAAGA 2184906 30 100.0 37 .............................. TCACTATACGGTCAATATGGAGGATTCATAGAAAATG 2184973 30 100.0 36 .............................. ATGATACAACTAGCGTGACCCAATCGAGCAATGGAA 2185039 30 100.0 36 .............................. ACAGTTTCAAAACTAAAAAACTCCTCATCCTCTTCA 2185105 30 100.0 37 .............................. GGAGCTGAGCTAGCGGGTACATTGAAAGTGGGGATTT 2185172 30 100.0 37 .............................. TCTCGTTCCTCAACAATTCAGCCAAATCCTTAAGTTC 2185239 30 100.0 38 .............................. CAGTTAGCCCCTATATTCATAGCACCTTTCGTGTTATA 2185307 30 100.0 35 .............................. TATATGCTTGAGAGGTACTTATACCCCTCTGAATG 2185372 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 75 30 100.0 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : TGAAGACAGTTTCAGACTTTTCACGAGCTCGGGGTTAAGAACTGAGGAGAGAGAACGACGAGATTACTAGTTGAGGACAGAGACGGAAATGCAGGTAGGCCGGACTGAGGTATTTTCGCTGCTTATATATCTAATCCCTTTAAGTATGTATGTGTTCTCACGACATAGAGAACCTCGATCTGAACAACGAACTTGATTTTGGATTTACGTATAGAAGTGGAGTTGAACTCTTTACATATCAGCCTTGCTTCTCCATTATTTTATATATTGGATTTATAAAAGGATAATGTATCACCAATTTTTTTCTGTGTTTAAAAATTTTCAGATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAGAACGAAATATGTTTTTCAAAACATATTATTTTTCACGTAAAACTCCCTCGGCAGTGAAAGGGAAGTTGATGGTGCGACTTCACTGCCGAATTCAGAGTAACGTTTTTTAGGGAGTTTTTACATAATGTTAAGCAGG # Right flank : CTGGAGTGATTTTGCTATCGTTATGTTCTCAATTTCTCCTGGTTGCTACGAAGGAGCTCAGTATAATGACGGCAAACCCCGCTAACTGAAGCAGTGTCAAGGTCTCCTTTAATATCAACCAAGATAGCACAACCGTAAACACGGGCTCCATCGAAGTCACTATCGAGGCTATTATCGAGTCTGTCCTCCTCATCCCCCTGTAAAAGAAGATGTAAGCTATGACTGTTGCGACAACTCCAAGGTAGATCCCAGTAAGGGTAGAGGAGACCGACACGTCTGGAGACAACAGGAAGGAGATCACCATGGTCATGGGGAGTCCCCATACAGACTGCGAGGAGATGATCTCCATGTCTGACATCCCCTTCATCTGCATGAACCTGGAGAACACTATGAGGAGGGCGTAGGTTAAGCCTGACGCTACCCCTAAGGCAAGGTCGAGCGTAGTTACGTCCGAGAGGTATATCAGGTATACTCCGAGGAAAACCATCACGGACGCCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //