Array 1 62131-60964 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFO02000002.1 Paenibacillus athensensis strain MEC069 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 62130 32 100.0 36 ................................ ATGGTGCATGTTTGTGCCGCGCATCGTATCTCCCGG 62062 32 100.0 35 ................................ CAGTAGCCCCACATGTCCATGCCGTACACGCGCAC 61995 32 100.0 35 ................................ ATTTTCGTTATCCTCCTTGGTTTTAATCGTCAGAT 61928 32 100.0 33 ................................ CGTTTGGAGTACATCAAATACCCGGCAGAAATC 61863 32 100.0 33 ................................ AAATACGCAGTAGTCAATGAGTACATCCATGAG 61798 32 100.0 37 ................................ AAAAAATCCAACATGGTGTACATTAGCGCAGCACCTC 61729 32 100.0 35 ................................ TGTTCAGGTCCGAAATTTTGGTCACAAGCATTAAA 61662 32 100.0 38 ................................ ACTCTTGCCGTCCATCTGATCAAGCGAATCGTTTGCAC 61592 32 100.0 33 ................................ GTAAAATGCTTGATACTGCTCGTCTGTATAGTC 61527 32 100.0 34 ................................ ACTGGAACGAAATCTTCTGCTTCGCCTGCTCCAT 61461 32 100.0 34 ................................ TTGAGCTCGTACACCTTGCCAACTTATTACCTTG 61395 32 100.0 35 ................................ GTCAAAAAATTTAGCCAGCTCTATGATACGCATGA 61328 32 100.0 35 ................................ CCCTTTAGCATCCCGTGGGACATTGCAAGACTCTT 61261 32 100.0 35 ................................ AGCTCAAGCTTGTCGAAATTATAAGAGAAAATCGC 61194 32 100.0 34 ................................ TCTCCCTCACCTCCTCTCGTTAAGACATGTCCAT 61128 32 100.0 35 ................................ TTTGCGCCTGATGGTAGTTACGTAGAGTATGTGCC 61061 32 96.9 34 ..............A................. ATGACTCGATCTAACAGTCCCATTTAATACTCCT 60995 32 96.9 0 ....................A........... | ========== ====== ====== ====== ================================ ====================================== ================== 18 32 99.7 35 GTCGCTCCTTACGCGGGAGCGTGGATTGAAAC # Left flank : GCAGTAATTCCCGGATTGGCCTGAATGGCCATTATAATGTCAAATAACCGAATCAGCTTGTCCACCTGTTCGCCCCTTTTCATCCAAATAGTTCCTTTTTCCTATGGACAACTACTCATTCTTCAAAAATCGCCAGATTCCTTCATAATTTTGGTAAAATAAGAAAAAAGCGTCCGCGATACGCCAAAAAATTTCGAAACCATCGCAATGTGAATGCACGCATATCCGCCGTTGCTGGGGGACTTGCAGATATGTTACAGTCATTTCAGGTAGCTGTTAAAAATTTGCGCGAACCCCAAGCGCACATGAATTTCCCGGGAGGTTCGCGCAAACAGCTCCGCAATGCCGCAACTCCTTGCCACGCAAGGGTTTGTGGTGCCGTCTGATGGGCTTGCGAAGTGCTTGAAGGCCAACTCGGCCAGCAAAAAGGCACTGTCGCGAAGAGGTTCGCGCAAATGCCCCCGCCAGTCCTTGCTACACAAGGGCTCGCGAGGGGTGCT # Right flank : CGATACAGAAAAAAGACCTTGCCTGCACATCCGCAGAAAAGGTCTTCATTCACTTGGCTTCCGTCTTTTAGCTTCAACCCATCTCTCAACAGCTAAAGCTGCCAGCAAGATAAAGGCAATTACAAATGGAGATTCCGTCAGCGACTTCAGTAAGTGAAGCAGCGTTTGGTTGGGATGAAAAAGGAACTGACGGAGCTCCTCCAACCGGAGCAACACGCCGAATATTAAAATCAAAACAGGCGCTACTCCGTAAAAAACTACACGGTACATCCCATCCAATTGCTTGATCGGAGACAAGACCAGTGCAGCCACGAACCCCGATCAGCAAAATCGGCAAGACCCACACCATAAAAAAGCTCAACCGCATCCCCCCTCCCCTCATCATAGCGAATACGGACAAAAAAATCGACCCGTCTGCCCCAACAGACAAGGTCGATTTTTTCATTAATTTATCCTTTGGCTCCGATCGCAATCCAGTTGACGATGCCGTACTGATCGTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 72153-73389 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFO02000002.1 Paenibacillus athensensis strain MEC069 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 72153 32 100.0 34 ................................ ATGAACGTACGGTAGTTGGTTAAAGGAGTCATCC 72219 32 100.0 38 ................................ CCTCGGCTGTGAATTGTGCGACGTGGAAGTGCTTCGTA 72289 32 100.0 34 ................................ CATCCTTCACCCCATTGAATCAAAAAGACATAAG 72355 32 100.0 35 ................................ GATTTGCCGGCACGCTGGCCCGGCACTCAGCTCCC 72422 32 100.0 35 ................................ ACATCTTACCTATCTTATCCAAAATATTCCCAATA 72489 32 100.0 35 ................................ CGACCAAACCAAACGCAGGATCAAGCAGAACCTAC 72556 32 100.0 34 ................................ CGGCGTGGGGGAGGGGACTAGCCCAGCAGCCAGC 72622 32 100.0 35 ................................ TAGACGCCTGCACAGGCGTACTTTAGGGGGTTAAC 72689 32 100.0 35 ................................ GACGACCTTCTGGCCGACCTTGTTGCCCACTCTGG 72756 32 100.0 34 ................................ AGCGAATACGCGCGGTTGCATATTTTGTTGTGCT 72822 32 100.0 35 ................................ ATCGTCCGTGATCTCGATCTGTACTTCCGCTTCTG 72889 32 100.0 35 ................................ ACATAATCAGCAAAAATATATTCGGCGCGATAAAT 72956 32 100.0 36 ................................ ACTGGAGTACGTGCCTGTTTTTTGGGCTGCGCTCAC 73024 32 100.0 34 ................................ TTTATCAGCTTGATTTACGATTTCAGCGCTCATT 73090 32 100.0 34 ................................ ATTATGGCCTTGAACTTGATCAAGCGAAAAAATG 73156 32 100.0 34 ................................ GGCGATTGGCGTCATGTCTCAATCCAACATCTAT 73222 32 100.0 36 ................................ ATTGGGGGAGGGGTGGCTTTAATGAAAATGTTCGGG 73290 32 93.8 36 ...C...T........................ CGCGCCCATCGTATAGATTAGGCTTACCCAACTTAA 73358 32 93.8 0 .......................C..G..... | ========== ====== ====== ====== ================================ ====================================== ================== 19 32 99.3 35 GTCGCTCCCCGCGCGGGAGCGTGGATTGAAAC # Left flank : TAGAAACGTTAAGCGCGCAAGGCAAACGACGGCTGCGTCAGGTGGCCAAAACCTGTTTGAATTACGGGCAACGCGTGCAAAATTCAGTGTTCGAATGTTTGGTTGACCCTTTGCAATTCAAGCAAATGCGCACGCAATTGGAGCAGATCATTGATCCTGAAAAAGATAGCTTGCGCTATTATATGCTCGGCAGCAATTGGAAAAAACGCGTCGAGCATATCGGCGTGAAGGAGGCATACGACCCTGAAGGGCTGCTTTGGGTGGAGTAAACGAGGCCGATTTGCCTTGCGCGAACCCCAAGCGCACATGAAAACCCCGGGAGGTTCGCGCAAATGCCGCGGAGATGGGCAAAGCCTTGTCCCGTATGGGTTTAGTACGATGCAGACAGGCTTTCAAGGCATGTGATACAATGATTTTAGCTTATCTTGCGGAGGCTCGATTCGAGGTTCGCGCAAATAGGGCCGCAAAGCCTTGCGGGACAAGGCTTTGCGGCCCATGCT # Right flank : CCACATCAACAGCACAAGCAGGTGAACGCATGACACTTCAGCAACTCAAATACGTGCTCGAAGTTGTAAAACAGGGCTCAATCAACGAAGCCGCTCGCCGGCTGTTTATTTCCCAGCCCAGCCTGTCCAACGCGATCCGCGATCTGGAGGTGGAGATGGGCATTGCCATTTTTGCAAGGTCGAATAAAGGGATTTCGTTGTCCAAGGAGGGCGCGGAGTTTTTGCGATACGCGAGGCAAGTGGTGGAGCAGGCGGAGCTGCTGGAGAGCCGGTATTTGAATGCGAAGCCGTCGCCGCAGCATTTTTCTGTGTCGACCCAGCATTATGCGTTTGCGGTGAATGCGTTTGTGAGTCTGGTTCAGCAATACGGGCATGAGGAGTACGAGCTGGCGCTTCGCGAGACGAAAACCTACGAAATCATTGAAGATGTTCAAAGCTTCCGCAGTGAAATCGGGATTTTGTATCTGAATGAATTTAACGAAAAGGTTATGAGCAAGATG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 234878-236170 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFO02000002.1 Paenibacillus athensensis strain MEC069 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 234878 32 100.0 35 ................................ CCCGTTGTGTTCGGCGCAATATGCGTGATGATATC 234945 32 100.0 34 ................................ CTCCTGATCATTGGGATGCGGAACAACGAACGTA 235011 32 100.0 36 ................................ TGGACACTAAACAGGTTGGGGATTTTGACAAGTATC 235079 32 100.0 35 ................................ AATTAACGGATTTTCGATTTTTGTGTCGCTGCATA 235146 32 100.0 34 ................................ AAATCGGCGGATAACCCGAAAACATTGGTCGGCA 235212 32 100.0 36 ................................ GATGCGTTGCGCCGTCCGAAATTTCGAGCGGCAATG 235280 32 100.0 35 ................................ CAGATAGTTGCTCATATTATTTGGCATTGTCCGAG 235347 32 100.0 33 ................................ GCGGGGATCAGCTTTTTAACAATTCCAATCGCG 235412 32 100.0 34 ................................ TACCCTTTTCTTGCTACCTTGTCTAGTATTGCTG 235478 32 100.0 34 ................................ TTACCAAAAGACGGGCGCGACATATATAAGGCAA 235544 32 100.0 34 ................................ CAGTGTGGCAGGATCATGGAGTTCAACCATCGTA 235610 32 100.0 34 ................................ AGGTAGTTAGTCATGGCGACGACCATTTCGGATA 235676 32 100.0 34 ................................ CCCGTACTTCTGCATACCTTTTTCCGGCCTTCAT 235742 32 100.0 34 ................................ TTGACCATAGCAATATTTTCGTCTGTGGCTTCAA 235808 32 100.0 34 ................................ GACTTGTGGGGCGGCTCGAATCCCCTCAACCCGA 235874 32 100.0 34 ................................ TTGCTGTCCATCGCCTCCAGCGCTCCGGCTCCGC 235940 32 96.9 36 ...................T............ AGCAATGATTTGTCCAATTTGCTGCGATAGCTGCTT 236008 32 96.9 34 ...................T............ CGGGCCGACCGGCTGCAAGTTACCGCTGTCCGGG 236074 32 96.9 33 ...................T............ AAAGGTCAGCCAGGTAAATTCGCACTGACTAAG 236139 32 90.6 0 A......................TT....... | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.1 34 GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAC # Left flank : AGGAGATGGACTATACCATTCGTCGCGAGAACGATACGTTCATTGTGGAAAGTCCGTCGATTGAAAGACTCATCAAGCGGACGAACTTTAGCACGCAGGACGGGATTATGCGTTTTGCACGGATTTTGCGCAATATGGGCATTGATCGTGAGCTGCGCAGCCGCGGCGCTGTCGACGGGCAGACGATCCGGATTGCCGATTTTGAGTTTGAATTTGTGGAGCGCGAATAGCAGAAGCGAGAGCACCCTTGGCGATCAAGGGTGTTTTTGTGTAGGTGGGACGGACGCTGCGCGAACCCCAAGCGCACATGAAAACCCCGGGAGGTTCGCGCAAATCTGCGCATACCGTAAAAAGCCTTGTGCAATAAGGTTTTCGTCTGGACAAAGCAGTGATTATCTGGTAAATTTTTATAAAAATCACTTGTCAATCAGTCCTCCGCGGACAGGTTCGCGCAAATTGCGCCACAAAGCCTTGCGGGGCAAGGGTTTGACAAGGGTGCT # Right flank : CATCAAGAAGCCTCAACAGGCTTCTTATTTTTTTATCTTTCCTTGTGAATTTAATGTAATGAAACTTGACACAAACTTCAAAAACCTTTACGATTTTATTATAAAATCAACATATCAACGTTTTTAAGTTATATAAACTAACGTATAAATAACAACGGGAGGGGTCGTCTTATGAAAGAGTGGATTCAGGCTGTAGGAAACGGCGGCCCGGCCGCTCGCGATTTGACGTATGAAGAGGCGGTGGCTGCGGCGCGTGCCATAGCCGAAGGTGAGTCCACAGATGCGCAAAATGCCGCTTTTCTCATGGCGCTGCGGATGAAGGGGGAGACCGGCGAAGAGCTTCGAGCCTTTGTCGATGTATTCCGCGCTCATCGATTGCCGTTCATTGAGCATAAGCATTCGCTTAACAGTATAAGCCCCTACGAAGGCCGGCATTTTGTCCCCGTCTCGCTGGCAGTCAGCTTGCTGCTCGCTTCCGTCGGTTTTCCCCAGGTGCTGCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 386663-388328 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFO02000002.1 Paenibacillus athensensis strain MEC069 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================================== ================== 386663 32 100.0 34 ................................ ATAAAATTCACGCTCGTTTGCATTCCAGTTAGTC 386729 32 100.0 34 ................................ AGTAATAAAAACAGAGAAACGAAAAACTTTCGAT 386795 32 100.0 67 ................................ GTCATTTATTTGATATAATTAGTTAAAGAGAACGGGTCGCTCCCCGTGGTATGCACGGTTACACCCA 386894 32 100.0 34 ................................ AAAAATCATTGATGGAGCGCGAAGGTGTCATGCT 386960 32 100.0 35 ................................ GTTGAGACGCTGCCCCCACGCTTCAATCGTTAACC 387027 32 100.0 36 ................................ CGTGACGACGGATGCGGACGATATCATGACGATCGC 387095 32 100.0 35 ................................ CAGTGGTATGTCAAACCATTCCTTTTCAATGTCAC 387162 32 100.0 34 ................................ ATCCCTCCCTTCCTTTTATTGATTTCCATGTGGA 387228 32 100.0 36 ................................ CTCCCCCGTGCGGGGGCTATGGGTCGTGTGCTTTTC 387296 32 100.0 34 ................................ ATAAACGTTTTACCGCTGATTACGTCCCCGACCC 387362 32 100.0 35 ................................ AGCTCGATATTCCCCGTATTCCTCCCCCGTGCGGG 387429 32 100.0 33 ................................ TCCCGCAGGCTGCCGGCATCACGGCCGCACCGG 387494 32 100.0 36 ................................ CGCTCGATATTCCCCGTATTCCTCCCCCGTGCGGGG 387562 32 100.0 34 ................................ CCGGAACAACGACGTGACAAAGTAAATCGTCATG 387628 32 100.0 35 ................................ CCCTGCTGGCAGCGTGGTTATCATCGATGAGTCAG 387695 32 100.0 33 ................................ CGCGCCTCCATATCGGCGACCTGATCGGGGGCC 387760 32 100.0 34 ................................ AATAAAAGGGGGCTATGCCCCCCTCACCGTTACT 387826 32 100.0 34 ................................ AAACTGTATGAGTTGGCGGAAGGGATAGGCAACG 387892 32 100.0 37 ................................ TCAGCTCGAAGTTTCAATTTATGGCAGGAGGAGCAAT 387961 32 96.9 35 .C.............................. CACAAGCCCGGAGGCATCTCGCCGCGGATGGATTC 388028 32 100.0 33 ................................ GGAATCCATGTTCCATCAGACACGACGGCAATC 388093 32 100.0 35 ................................ TCGTAGGCGTTGTAATACATGGAGTCGTTAAACTG 388160 32 100.0 38 ................................ TGCCGACAAATTCGTGGGGACGCTCATAAGCGGCGGAG 388230 32 100.0 35 ................................ TCAGTACATCGCGCACGGTCACATGGTTTAGTGGT 388297 32 75.0 0 .A....T....CT.A.......CA..C..... | ========== ====== ====== ====== ================================ =================================================================== ================== 25 32 98.9 36 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Left flank : TACGCTGAATCCGGCCACCGGCAGCTACGACATTTTGTTCCGGATGGAAGAAAACAGCGACAACAATGCTCGTCTGGAATTTAATCTTGGACAGAATACGAATGCCGTGTGGATTGGCAATGTACGCGTTGAACAATTGAATTAAGAGTGAAATGAGCTTGACGCAGGCGCCGCTTTCCGAGAGGGAGGCGGCGTTTTGGCATGGAGACACGATGTTCAGCTTTGTTGCTTGACGAGGGCAGACAGTCACTATTGCCGGAAGCGCTTGATGTATGCTACATTGAGCTTGCGCGAACCCCAAGCGCACATGAAAATCCCGGGAGGTTCGCGCATTTGCATCCGAAGTCGCGAAAAGCTTGCCCAGCAAGGGATTCAGCAGAAGCCGTTTTTGCTTTTGCGCTGAAAACATCTACTTTTTGCGTTATCGACCACTGCTTGATTTGAGGTTCGCGCAAAAGGACCTGCGAAGCCTTACGGGACAAGGGCTCGCGGGGGATGCT # Right flank : CGCAAAAACAAAGAACCGCGCTTCCACTAGCGAAGCGCGGTTCTTTAACAACCACAATCTATAACGGCTTAGGCTCGCCCGCCGGTTTTTCCAGCACAAACAAAATCAAAGCCACAACGCTGCAGGCGGCAGCGCTTAAAAACAGCGCCGACATCGGCAGGCTGTGCGACAAGCCGGTGCTGAGCAGCGGGCCAATCGTGCCGCGAATGCCGAACAGCATCAGGTGCAGCCCAAACACTGACGCTTCGCGTCCCGGCGCGATGCGGAACACATAGGCCATGCAGCCGATATCCCAAGCGGCGTCGGCAAATCCCTGCAGTCCCCCGGCCACAAGCAGCACGGGGAAGCTGTCGAATAAGCCGTAGAGCAGCGGCACGAGCAGAAAGCCGCCGAATGCAAAATACATGGCGTGTTTAGGCGTATACCGATCGATCATCCAGCCCATCAGCCAATAGGCAAACATCAGGAAAAGAAAATAGACCATCCGAATGAAACCGATT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 39022-36281 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFO02000014.1 Paenibacillus athensensis strain MEC069 scaffold_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 39021 33 100.0 34 ................................. ACGACGGCCATTGCATCCAGGTAATCCTGGTTGC 38954 33 100.0 34 ................................. GCTGAATCCGTATTGAATGGATGGGACAAAGAAG 38887 33 100.0 34 ................................. TTGAGCAGGACGATCCCGCTGAATAATCAAAACA 38820 33 100.0 36 ................................. CTTTCCTGCCAGGTTTCTGCCATTTTTTCAAGAAAA 38751 33 100.0 34 ................................. AAAAATCAGATACAGAAATAGAGTTTTTGAATCA 38684 33 100.0 36 ................................. AAATTCTTCACGTGTCGCAGCCGAGCAAAGCTCCAA 38615 33 100.0 34 ................................. CAATCTAAAGAACCCCTCTCATGTTATTTTTTTT 38548 33 100.0 34 ................................. AACTTAGCCCAAAACGGATTAGTGAACATGAGCG 38481 33 100.0 33 ................................. CGTCGTTCAACGAAAACTGCGCGTATGTACGTG 38415 33 100.0 35 ................................. GCTTTAGTAACAGGAAGCTGACGATCAAACAAATA 38347 33 100.0 34 ................................. ACAACGACCGTATCGACTGGAGCTGTAATTTTTC 38280 33 100.0 34 ................................. CTCCTTCCGCTCCTGCCGCTGCTGCTCGCATGGC 38213 33 100.0 37 ................................. CCCAAAAAGCGCGGAGCCGCCGTGTAAAGACAGGTAA 38143 33 100.0 35 ................................. CTACTGTTGCATACGCGGCAGGATGGGGATGGGTC 38075 33 100.0 34 ................................. AGGCAAGGCGGTTCCGTCTCCACGACCAGTTATC 38008 33 100.0 35 ................................. AAGCTTTTAAAGAAAAATACTTTGCTCTTGTTGAG 37940 33 100.0 35 ................................. AAGCTCCATAACGCCGTAATCGAGATTGCCCCAAT 37872 33 100.0 35 ................................. TCCCCTATACAGTTTTTGCATCCTTGTGTTCGATT 37804 33 100.0 34 ................................. AGCTGGAAAGCACCCAATCTGGCAGGAGCCGTCA 37737 33 100.0 34 ................................. TCATCTGTAGTCTAATCTCCCTTGAACGGTTTCC 37670 33 100.0 36 ................................. AAAATCGGAATGTTTGAACACAAGCTGGCCAGTTTG 37601 33 100.0 36 ................................. ATATGATCCGAATTTATAATGTAAGAAAAGTCGTCA 37532 33 100.0 35 ................................. CCCTCTTGTCGAACGATGTTTTGTCGTGGTATGCT 37464 33 100.0 35 ................................. CCGACTAACTGATACTTACTCTATCAAAAACGACA 37396 33 100.0 35 ................................. ACAAATACCCATACCCCCCTCTGGCTGAATGTCGA 37328 33 97.0 34 ...A............................. TTCCGACCGCGCGAGCATGTTGATTTGCTCAGCG 37261 33 100.0 34 ................................. AACGATTAAATCGACTTCCTCGATCACGCTCCAC 37194 33 100.0 35 ................................. GAATTTGCTGTATTTGATGAAATTCAAGAGCTCCG 37126 33 100.0 34 ................................. GGTTCACCCAGACGTGTCGCATGCGATTTATACG 37059 33 100.0 36 ................................. AGAGCCTGATTACCCGTGCTGTTAAACGTGTTCCCA 36990 33 100.0 34 ................................. GCCCAATCCCGTAGACGAAATACGAAAATTGGCC 36923 33 100.0 35 ................................. TGTTCTGAACATTATCAAAAACGCTGTCTATGCTG 36855 33 100.0 35 ................................. GATGATAGCCCACCAGAAGAACCCGAAGAATAATA 36787 33 100.0 36 ................................. ATTAACGGTGCGCGATGCAACCAAAGAGGAGATTGA 36718 33 100.0 36 ................................. TATGTGTATTGATCCAATGTTACTTGGCCAGTGCGA 36649 33 100.0 33 ................................. AATATGTCATCCAAAGTAGCCCATTCGCCATGT 36583 33 100.0 33 ................................. TTGAACTATTTTTGGATTTACATTGGCGGCGAG 36517 33 100.0 37 ................................. GCGCATCTGTCCGTAGGAGAGCTTGAAAAGATCCGTG 36447 33 97.0 35 ........T........................ CAGGATCAGTAGTAAGTGTCAACTGGTTGTTACTC 36379 33 90.9 33 .......G..T.............A........ AATGTCAGCGGGATGGAAGCCGACGGCGAGCCA 36313 33 87.9 0 ........................A...A.G.G | ========== ====== ====== ====== ================================= ===================================== ================== 41 33 99.3 35 GTCGCATCCCGTATGGGATGCGTGGATTGAAAT # Left flank : CTGGATGAATATCCCCCTTTTTTATGGAAGTAGGTGAGCGGCGTTGCTTGTGTTGGTGACTTACGATGTAAGTACGATGGATAGCGCAGGCCAGCGGAGATTACGTCAAGTATCCAAAGCTTGTCAAGATGTAGGTCAACGCGTGCAAAACTCCGTTTTTGAATGTGTAGTGGATGCGACTCAGTTTGCAAGCTTAAAAATCAGACTGCTTGCTATTATTGATCAAGAGCAAGATAGTCTGCGCTTTTATCAACTTGGAAACCATTTCAAAAACAAAGTTGAGCATTTCGGTGTCAAAGAATCGATTGATCTGGAAGGGACTCTCATCCTGTAGTGCGGAAGTTAAGTACACATACCTTTATAAGAGATTCGCACCTCTAATTTTACAAATACTTCTATTTTTTAGGCTAAGAGGTTTTGAATTGCTTTTTGTAATGAATAGTTAGGTTGTTTTTTGTAATTAATGTGCGTTTTTGGTTGTTTTTTGGCCTAAAACCGCT # Right flank : AAAGCCCGCACACCGTAGGCAAAACATGAAAACAACAAGCCAAAAGCCCGACTCCTGCGAATCGGGCTTTTGGCTTGTTATTGTCACGCGACAGCTTCCCTTACTGGATCGGATCGGGAATCATATTCTCTTCCAGCAGTTCACTGTTGGTTTTCATCTGCTTCATTTCGTTGCCCAGCTTCTTCATCTCGTCCATGTTCGGGGCCATGGAGCCGTTGGTGGCGTGCGCTGCCGACTCGACCGCGGGATCGGTTCTGCTATTACGGCAGATTTGTTCGATCTCACGCAGTTTGTTGAGCGCGGCGCAACGGATGTGCAGTGGCACCATGACCGTGTTGTCCATGCCGGCTTCTTCCAGCTGGACAGCCGTCTCGCCGTCCTCGTAGCGGAGGATGCTGACGGTAAAGGTGTACGCGCTGTCGGTCGCTTCATCGGTCATGTCGACCTCGTACACGGACTTCTCCAGATATTGGATGCGCTTCAATCCCAACTCGTTCAAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 120569-121601 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFO02000010.1 Paenibacillus athensensis strain MEC069 scaffold_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 120569 32 100.0 36 ................................ TGCGCCGATGAGAGAAAACTATCGGCAGCACTTGGG 120637 32 100.0 33 ................................ CGTAAGGTTTTGCGTCGTTACCGAACCGTTGAA 120702 32 100.0 35 ................................ ATGAACGTACGGTAGTTGGTTAAAGGAGTCATCCA 120769 32 100.0 34 ................................ GGGTTACAATCTGTAGGGTAACAGGTAATTCATG 120835 32 100.0 35 ................................ AATAATTTTGACGGTTTTGTCCCCATTGCTAAGCA 120902 32 100.0 39 ................................ TTGTTCGTGTATAATGGGATTCTATCCGTTGCGGGATTC 120973 32 100.0 36 ................................ CCCTTGACATTTTGAGTTGATTATGCATTGCGAACC 121041 32 100.0 35 ................................ CACGTGAAACATTTTATTTATGGGCAAAAAGATGA 121108 32 100.0 35 ................................ TTAGCGAGCTGTTGCGATGATTTGTCAATCGTGAC 121175 32 100.0 34 ................................ ATCGATCTGGACCGCATGACATCCGGCTTCCAGC 121241 32 100.0 33 ................................ ATCGAAGATCAAACGGTGTTCAAAGGAACTGCG 121306 32 100.0 34 ................................ ACCTGTAGAATATGACCACGCCGCCCATCTTGGC 121372 32 100.0 34 ................................ AGCGCATATCCGTCTGTAAAATAAATGCGCACAT 121438 32 100.0 34 ................................ GTCCCTATCGACGTAATACGATGTGCTTTCTTTT 121504 32 100.0 34 ................................ AAAAACGATGCAGATATTCAGCGATTCATTAATT 121570 32 75.0 0 A.....T...AC........A........CCT | ========== ====== ====== ====== ================================ ======================================= ================== 16 32 98.4 35 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Left flank : ACAAGGACGTCGAGGGCATTGAGCATCACTTGAGCTGGGATTCCATCACCTGCATCGAGACGTTGCTCGAATATTTCCGCCGCGACGGCCAGCGGTTGGAGAATTTGCAGCAGCTGCGCCGGGAGTTGGATGCGGACAGCTAAGTCTGCCGTCATCTTGAGAACTGAATAGGGAAGTTGAAAACCTGCGCAAGCAGGTTTTTTGCTGTTTATCAGCTGGGGCTGGGCGGCGGATAAATACGCAGTTGCTGAACGGTTTAACGGTGTGATAGGGTAAGAGAGTAGTCCTGCGCGAACCCCAAGCGCACATGAAAATCCCGGGAGGTTCGCGCAAATGCTGCGGAAGCGGTGAAACGCTTGTCCCGCAAGGGATCATGCGATTGCAGGACGCTCGGAGCGAGAGTTTCGGGCGCGTGATGACCTGTCAAACGGCCCCTCATTGAGAGGTTCGCGCAAATGTCCTTACAAACCCTTGCTGGACAAGGGTTTGTAAGGGGTGCT # Right flank : TTGCCCCGAGTGGAAGCTGGAGCGACACGTACACGCGCTGGCGTTTTTTACTATGTCGGTATCCAGTGTGAGCCTAGTCGTCAAGATTTTTATACTATCTAATCTAGCACTTATTTGGTTGGTGCAATTTGTATTTCAATTTACTTTTTTCTTTTTAATGTAATTTAATGAAAAAAGGAATGTGGAGGCGGGAATTATTAGTGAATTCATCAAGTTGTTAGATGGAAAATGGGGCCAGAGCAGATGGCAAACCAATTTCAGATTCGGACATTCCCCAATTAATCGAACTATCGAAAAGAAAGGCTATAGAAAAAGAAAGCAACAGCACAAACCCTAAATTCCATAGTACTAAGCAGGAACAAGAATCCAAGTTTCACTTTTCTCAAAAGTATAATCGAGAGGTCAGTTTTTATAATGATGCAATTTATTTAGAAACCAGTAGAACCAAAAAATTAAAGAACAATCAAGAGAAATTAGAACAATGCAGGAAAGCAGTTCAA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //