Array 1 19565-20612 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLQU01000009.1 Pseudomonas aeruginosa strain WH-SGI-V-07623 WH-SGI-V-07623_contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19565 28 100.0 32 ............................ TGACGTGCCAAGCTCCGCGCCGATCTACGACG 19625 28 100.0 32 ............................ TACGTCCTGGTCGTTGTTGCGACCCGATTTAA 19685 28 100.0 32 ............................ ATGTCCTACTCCGACCCCAGGCATTGCCACAA 19745 28 100.0 32 ............................ ATCCGGTACGTGGTTTCGACGAGCAACGTGGC 19805 28 100.0 32 ............................ ATTCGAACTGGTCGCCCAGTTCCACCGCATCG 19865 28 100.0 32 ............................ ACAATATCCGGGAGTTCAAGCCGGATCATCCG 19925 28 100.0 32 ............................ ATGCGCACGCGGGCCTTGGTCAAAGCTCCCCC 19985 28 100.0 32 ............................ GGCAAAACCACCCTCACAAACGGCATCATCGA 20045 28 100.0 32 ............................ AGCAGTTAGGCGATGCACAGCCAAAGCTACTC 20105 28 100.0 32 ............................ ATGACCTTTCGATGCTTGCGCGTCGGCTCGGC 20165 28 100.0 32 ............................ TTCTCCGGGCGCGCCCTGGAGCCATCATTGCC 20225 28 100.0 32 ............................ AACTTCCGGCCAGGCCGAGGGCGACACTTACA 20285 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 20345 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 20405 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 20465 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 20525 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 20585 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30836-29127 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLQU01000009.1 Pseudomonas aeruginosa strain WH-SGI-V-07623 WH-SGI-V-07623_contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30835 28 100.0 32 ............................ ATGACAACACGCATCGAGCGGTTTTTCTTGTC 30775 28 100.0 32 ............................ TAGGAAAGCGGATCATTTCCGCAATTCTCCGA 30715 28 100.0 32 ............................ AGGAACGCCGCCGCGCGCACAGGCGACGTGAT 30655 28 100.0 32 ............................ TCGATGGCCTCGCACTGCGCCTGCGTCATGAT 30595 28 100.0 32 ............................ TTCTGCTGATGCGGCGTGTAACTCTTACTTCC 30535 28 100.0 32 ............................ GTCGGGCAAGCGCCCCCACTGGGAAAATTGAT 30475 28 100.0 32 ............................ AAGGACCATAGTTACCCCCGGGCCAATCTGGA 30415 28 100.0 32 ............................ TGGAGCGCGTGCCGCTCAGGCGGTGTATGGGA 30355 28 100.0 32 ............................ GACATCGGCCGCGAGGGGATCACCAGCTTCGC 30295 28 100.0 32 ............................ AGCGCCTGACTCGTTCGCAGTCGTCTGCGGTA 30235 28 100.0 32 ............................ TGTCGAAGAAAAACCTGCGAAGGCTAAAGCGT 30175 28 100.0 32 ............................ AAGCGCGCCTCCATGCGCAAATTGCGCATATC 30115 28 100.0 32 ............................ TCGCTGACCGTCAGGCCGTTGAGGCGCGCCAG 30055 28 100.0 32 ............................ AAACGGGTTGTTCTTCACGAACGCGCAACTAT 29995 28 100.0 32 ............................ CTAGGGCAATCTGTATATTCAGCGGTTTCCTA 29935 28 100.0 32 ............................ TAGCAGTGTCGAAGGCATCGGCCCGGCTGCTG 29875 28 100.0 32 ............................ TCGAGGTTGGCCAGGTTCAGGCGGTTGACGTC 29815 28 100.0 32 ............................ ACCGGCGCCGACTGGCCTTCGATCCAGATAAC 29755 28 100.0 32 ............................ TTCCAGGGCCTTCAGGTCCGGGTAGTCCTTGG 29695 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 29635 28 100.0 33 ............................ CTGCCCCGCTCTACACCCAGCCTGGGGCTTCCT 29574 28 100.0 32 ............................ GCATTGCACGCTGGTGGGCAACGGGTGCGACC 29514 28 100.0 32 ............................ TCGATCCACACTCGCGAGGACGTGGCCACCGT 29454 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 29394 28 96.4 32 ....................T....... TTGCGGATCCGGCGGTAGACGACCATCCGCAC 29334 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 29274 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 29214 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 29154 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //