Array 1 212067-210877 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXU01000003.1 Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 8400 SEES8400_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212066 29 96.6 32 ...........................T. TCTATGTATTCATCAAAAAGTTCTTTTATCGT 212005 29 96.6 33 ...........................T. ACGTTGGTGATACGGAATAGTGGCAATAAAATC 211943 29 96.6 32 ...........................T. ACCAATAACAAACTAACAGGTGTAGAGCACAA 211882 29 96.6 32 ...........................T. ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA 211821 29 100.0 32 ............................. ACCAATAACAAACTAACAGACGATCGCATCAA 211760 29 100.0 32 ............................. GTGAGATTAAAACGGGCTAACTATTTGTGAGA 211699 29 100.0 32 ............................. GCGCTTTTCAGTGACAAAAATGCCTGGAAACT 211638 29 100.0 32 ............................. CGCACTGACGGCGGGTTAGCTCGCCACTTGAT 211577 29 100.0 32 ............................. CGTGATTACGGCAAGGTGCATACGTCCTTTTG 211516 29 100.0 32 ............................. CCGTCGCCGAAATTATTCAGCCTGGACATGAG 211455 29 100.0 32 ............................. TTGACGAATCAGACCGACTCGCACGTTTACCT 211394 29 100.0 32 ............................. TGAACGCGCTACCTACAATATTTCCACGGTCT 211333 29 100.0 32 ............................. ATTTTTTGATGAGCAATCTTGACAAAATTAAT 211272 29 100.0 32 ............................. ATGATTACTATCGCCTGAAGGTGAACGAGTTA 211211 29 100.0 32 ............................. CCATCAGTGATAAATGCTGCAATCGCAGTTTT 211150 29 100.0 32 ............................. CATTCGAGAGCAAAACCGCTGACTAAACTTGG 211089 29 100.0 32 ............................. GATTAACAGTAAACCCGGGGTCTTCTATTCCA 211028 29 100.0 32 ............................. GATACATCTGATAATCCCAGGGATTTCGCTAA 210967 29 100.0 32 ............................. ACTAATACACTGACAATTGACGCAATCCGCGC 210906 29 100.0 0 ............................. | A [210879] ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230116-228317 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXU01000003.1 Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 8400 SEES8400_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230115 29 100.0 32 ............................. TTCAGCACCGGACGGGCCAGCATACGACTCAC 230054 29 100.0 32 ............................. ACCAGCAGACCAACCATTAACCCTGTAAAGGC 229993 29 100.0 32 ............................. AAATCCCCTAAAGGCATAGCCATCGCCGATCG 229932 29 100.0 32 ............................. GCGTAGCCTTCGCTGCAGCGAATCCGACTCAC 229871 29 100.0 32 ............................. GGCATTGACCCATTCGACCCTCCGGAAAACGC 229810 29 100.0 32 ............................. GCAATTCCGGGCTGGCGTCGCTGGACACGCGC 229749 29 100.0 32 ............................. GCTGGCTGCGCGATTGCCCTGGGTGAATTCGT 229688 29 100.0 32 ............................. CGATCGACCTTAAAAGCATATTCAGGCTTCAA 229627 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 229566 29 100.0 32 ............................. ACGATTTGCGTGGCACGCTGCGCACATTAATC 229505 29 100.0 32 ............................. GAGATAAATAAGGTGATAGAAAAAACAAAATA 229444 29 100.0 32 ............................. TCAGACAGTAAACCTCACGGCCTGACCGGGAG 229383 29 100.0 32 ............................. TTTTAAATCACCACTGTATTTGCTAGCCATCC 229322 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGAATATACGGGG 229261 29 96.6 32 ............................A TCACGATATGAATATGGGGCTTACGTGCAACC 229200 29 100.0 32 ............................. CGCTGCGAGGCCGTGACCATGTTTTCAGTACC 229139 29 100.0 33 ............................. GTGTTGCAAAAGGAGCTGGCCGGTACTGATGAC 229077 29 100.0 32 ............................. GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC 229016 29 100.0 32 ............................. GGCGCTGTATTAACCCACCGGTACTACAACAG 228955 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 228894 29 100.0 32 ............................. AGACAGGTTTTAGTATTTAGTGACCGGGTGCA 228833 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGTGTT 228772 29 100.0 32 ............................. GCGCTGGACGTAACCGAAACGGGATTAAAGCA 228711 29 100.0 32 ............................. CTGGGGATCTGCATGGACTCCCGCACGTTGCG 228650 29 100.0 32 ............................. TTGTCAAACGTGGGAGCAAGTTGCCCGGAAAC 228589 29 100.0 33 ............................. TTTTTCGATGCGTTCACGCTCCAGACGTTCGGC 228527 29 100.0 32 ............................. GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA 228466 29 100.0 32 ............................. GGTTTCTGAACTACTCATCTGCCATTCGTGAG 228405 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 228344 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTAGGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //