Array 1 10866-10171 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZFB01000056.1 Staphylococcus warneri strain SNUC 1312 contig056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 10865 33 100.0 33 ................................. AACTTATTCCAATTGCTTTATTGACGTTGAGCC 10799 33 100.0 33 ................................. AACAAAAAACCATTGATAACGAAAATGCGCGAA 10733 33 100.0 33 ................................. AACTTACATTTGAACAGTCTGAATTTGTACCAC 10667 33 100.0 33 ................................. AACATTCGAAAGGTTTTGTCGCAAGTGTTCCGT 10601 33 100.0 34 ................................. AACTTATAATTTTTAAACCACAAGCCTTAAGCCT 10534 33 100.0 33 ................................. AACCAATTGTACATACACCAACTGCTCCGACTG 10468 33 100.0 33 ................................. AACTACGTATCCTTAAAAATGGTGACTATAGTA 10402 33 100.0 33 ................................. AACGGTTTCGCAAACGATGATTCGTTAGGTTAT 10336 33 100.0 33 ................................. AACATACAAGAAGGAAAAGCACTTAGGTTTCAT 10270 33 100.0 33 ................................. AACAACTTCGGTAGTAAATCATGCAAAAGGTTT 10204 33 100.0 0 ................................. | A [10172] ========== ====== ====== ====== ================================= ================================== ================== 11 33 100.0 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTAAGGATTGGAAGTATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTGGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAAGATAAAATCGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : ATTGGAGGATATTTATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTTAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACCGTCTATATTATAAATGATAAAAATAAGTCTGATCATTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACAATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCGATGTATGTCATCGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATAGAAAACAAGTTTATGCAATATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATTGTAAACTTTTTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 34222-34717 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZFB01000008.1 Staphylococcus warneri strain SNUC 1312 contig008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 34222 33 100.0 33 ................................. AACAAGAAAGCGATACTGGTGGTGCTTATTGTG 34288 33 100.0 35 ................................. AACTTATTATTTCCCCGATTATTGCTATTGCAAGT 34356 33 100.0 33 ................................. AACATAAATCTACAGATTCATTAGGCAAGCTTT 34422 33 100.0 33 ................................. AACGAATGGCATAAAAACAGCATCTTTAATTGT 34488 33 100.0 32 ................................. AACAATGCCTATTTTTGAAGGTGTTAAACGAG 34553 33 97.0 33 ...............A................. AACTCTTTGTTCATTCTCTCGGTCTGGGTCTGA 34619 33 97.0 33 ...............A................. AACGGTGTTTTTAACAAGTCTAATCCCGTATGC 34685 32 75.8 0 ...........T...A....G.-A.....AA.T | T [34711] ========== ====== ====== ====== ================================= =================================== ================== 8 33 96.2 33 GTTTTAGTACTCTGTGATTTTAGGTATGAGTGA # Left flank : AAGGATTATATACAGACTTCGTCATCGTTAATCAACAAGGTCATCGTGTTCGACCAGGTCAAGGCTATGTACATCATGTCGCAGTCAATCTCCCTACAGATACAGACTTAAATGACATTTATGAAAAAATAGCGCGACAACCCAACCCTAACTCCGGTATCATCGATCGATACTTCTTCAAATCGTTATACTATCGACATAACCAAATCCTATTTGAATTTGCGACAGCAGAGCCAGGATTTACCGTTGATACACCCGTCGCTAAACTAGGTCAACAACTCAACCTCCCCGATTTCCTAGAGGGCAAAAGAGACGAGATTGAAAGCCAATTGAGAGAAATATAAAATACAATATAAAAGCACTCGCTAGTACGGCGAGTGCTTATTTGTGGTTATAAAAGTAGATTTTTATTTGTTTAAGATATATATTTAGATTATCAAGTAGATAATACGAAAAATGGATTATTAAAATTTTTAGTAGTAAAGTTTTATATGCTAGAG # Right flank : ATAATATTTTAGTTGCAATGCTATTGAATAACAATTATAATTTAATTACAGAGAACAAGTTTAGCTAACTTGTACTCATACCTAAAATTACAGAATCTACTGAAACAAGACTATATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTGATTTTAGGTATGAGTGA # Alternate repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //