Array 1 15427-19116 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSGG01000039.1 Vibrio cholerae strain N2745 NODE_149, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15427 28 100.0 32 ............................ GTAACGTACCAGCCATTGCCAAGATAAACAGC 15487 28 100.0 32 ............................ TCGTGGTAAACGCGCATGTCAATGAGGTAATC 15547 28 100.0 32 ............................ ACAATCTGAAAGCGCAAATGTGGTGGAGACTG 15607 28 100.0 32 ............................ TAGAAAACAAAAAACCCGCAAAAGTGCGGGTT 15667 28 100.0 32 ............................ TTCTAGTGGGGACGGCAATCAAGCTCCTAATG 15727 28 100.0 32 ............................ ACGATGGACATAAGCGCGGTAAAAGCTATGCG 15787 28 100.0 32 ............................ GTAGATTTTCAGGTTTTCGTCATTAGCTGGGT 15847 28 100.0 32 ............................ AAACACAACCAGCAGCGCCAATAGGCGTCAAG 15907 28 100.0 32 ............................ AAAAGATTAATCAATGGCGGCAAGGAGGGGCT 15967 28 100.0 32 ............................ TGGCATGTTCACCACGTACACGGGCATTACAC 16027 28 100.0 32 ............................ AACGGCGCTGAAATCACCCTCATTGACTGGAC 16087 28 100.0 32 ............................ TTTTCGCTGTTTGCGGTTGGCTTTTTAGTTCG 16147 28 100.0 32 ............................ TTTGGTTCGTTCCGCACGATAGCGAAACTTAA 16207 28 100.0 32 ............................ TGCTTGCTACTTATCGAGCAAAAACAGGTCTG 16267 28 100.0 32 ............................ TTAATTCGATAGATCAACTCATCAGGGTTAAT 16327 28 100.0 32 ............................ TGAAATAAATTTAATTGACCTCTTTTATAGTC 16387 28 100.0 32 ............................ TTTCTTAGTGTCTAACTCGACTACTGACGGCG 16447 28 100.0 32 ............................ TTGAGGTGATGAAGTCTAGAAAGTCAGCGACT 16507 28 100.0 32 ............................ TGAATAGTGACAGCAACATAACCGCCGTCACA 16567 28 100.0 32 ............................ TTTCTGCCAGATTGGATAGCAGGGATAATATG 16627 28 100.0 32 ............................ TTACACCGTACATACGCGAATTAATTTTAGAA 16687 28 100.0 32 ............................ TCAGTCATTACCTGAGGCACTACAACTGGCCG 16747 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 16807 28 100.0 32 ............................ TATTAACTTTATGAGTCAATGGGGATAATCTG 16867 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 16927 28 96.4 32 ...................A........ AAATGCGATAACCCAGAAAGTTAATGCCTTGA 16987 28 100.0 32 ............................ TACATGGCATTCATGAGGGACGGCAAGCTGAT 17047 28 100.0 32 ............................ TGTCTGCAAATTATCTTTTGCAAGCTGCAGGC 17107 28 100.0 32 ............................ TATTAAATATCGAGCGCATCAATGATGATATG 17167 28 100.0 32 ............................ AAGCACATAGCCAGACATCATCGAACCACTGG 17227 28 100.0 32 ............................ TTTTTCATAGGCTCTTGTTGAGTTTCCACTCA 17287 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 17347 28 100.0 32 ............................ TTTTCTAACGAGTCCATGCGATAAGCAAAAAA 17407 28 100.0 32 ............................ TAGCATTAAGTGAATTGTTGGAGTGCCCACGC 17467 28 96.4 33 ...........T................ AGATAAGCGTTGTTTAAGCGGCTGCGGAACACG 17528 28 96.4 32 ...........T................ ACGCTATTTGGCGAATTCGTCCACGTAAAAAC 17588 28 96.4 32 ...........T................ TTCGCTTAGTTGAGTTTGAGCAAGATAAACAA 17648 28 96.4 32 ...........T................ ATTTCCTTGATGTGCTTGATTTGATCAGCTTT 17708 28 96.4 32 ...........T................ GTTAAGCGTGGGTTATACATTGTTAATGGTCG 17768 28 96.4 32 ...........T................ ATAATACAACAAAACTCGAGTAACTCTAGCAA 17828 28 96.4 32 ...........T................ ACCAGTGGTGAGCTGAAGCATTGAAGTACCTT 17888 28 96.4 32 ...........T................ GCTTCGATCAAGTCAAAATCGAACTGGTTTGT 17948 28 96.4 32 ...........T................ AGCTCATCTAACTCTTGCCAAACTTCTGGCTT 18008 28 96.4 32 ...........T................ ATTTGAGCGCCGAGTTTAAACGATAGTTCATA 18068 28 100.0 32 ............................ GTTGAAATACCATGCTTTTTTTGATCTCGAAT 18128 28 100.0 32 ............................ TTGCTGGCTGGTTATGTGATGCCAAACATGTT 18188 28 100.0 32 ............................ TTCAAATAGAGGGCTCGGGCGGCTTGTCGGAT 18248 28 100.0 32 ............................ TTAGTTTGGGATTGTCGTGTGGTGTGTCCGGT 18308 28 100.0 32 ............................ AAACGAAAGCCGTAGCCATACAGTTAAAGTAA 18368 28 100.0 32 ............................ ATTCGAACTGCGGCATTCAGCATGGTTTTACC 18428 28 100.0 32 ............................ AGTAACAAAAAACTCGCCAAACGCATGGCGGA 18488 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 18548 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 18608 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 18668 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 18728 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 18789 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 18849 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 18909 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 18969 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 19029 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 19089 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 62 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : GGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGAACTTTTCAAGGTAATCACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //