Array 1 712-1078 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIO01000212.1 Methanoculleus sp. MH98A c212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 712 32 100.0 36 ................................ CACCACTCGCCGAAATGCTCGACACAGAGCACCCGG 780 32 100.0 34 ................................ CTCGAAAAATGGGTCACGATCACCGACGCGCTCA 846 32 100.0 36 ................................ CCGTTGGCGAGGCGCTCCCGCTCGACCCGATCCAGC 914 32 100.0 35 ................................ CGGACTCAACCGACGAGCGCCTGCAGCGGATCGCG 981 31 96.9 35 ......-......................... AAGTGCGGGGTGAGGGGGTGCCACCCTTCCGCGCC 1047 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 99.5 35 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : AACTATGGACAGCGGGTTCAGAACTCCGTCTTTGAGTGCCTTGTCGATCCTGCCCGGTTTGCGAAGCTTAAACATGCTCTCTGTGAAATGATCGATGAGGAGAAGGATAGCCTCCGGTTCTACTACCTGGGTAAGAACTGGAAAAACCGGGTGGAGCACTTCGGTACAAAGGAGGGGTATGATCCGGAGGGTTTATTAGTGGCATGACTCTGCGAACCCCAGGCGAACAGTGATTCCCCGGAAGGTTCGCGGAGAAAATTTTCAAACACTATATCATTCTTGTGGTGCGGCTGTCCCGGTCAGTGTGCTGAGTCTTCGCCCTGAAGGGGGGACTGCGTTGCTGAATATATCTTTGAATTAATATGTCATATGGCGTATTATAATCGACTCGCTACATCTGTCGAAAATAACATTTATCTATCTTCCGATTGAATATCGACTAAATCCGAATTGTCCAGTCTCTCCCGAATGGATGTGAGGATGATCCGGGTTGATTTGCA # Right flank : ATGAAGAGCCCCAACGCGATCGGGCTCTCCGGGACGTCGCACCCTTCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3621-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIO01000256.1 Methanoculleus sp. MH98A rep_c256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 3620 32 100.0 37 ................................ AAGTGCGGGGTGAGGGGGTGCCCACCCGTTCCGCGCC 3551 32 100.0 35 ................................ ATGAAGAGCCCCAACGCGATCGGGCTCTCCGGGAC 3484 32 100.0 34 ................................ AATGACTTCCCTGTGATTCCGGGCTGGTGCCCTC 3418 32 100.0 35 ................................ CACCGGCACGATGACGATCGCGGCGCTGCCCTGCT 3351 32 100.0 34 ................................ GAGATCGTCGACCAGGCCCCGGCCATCGATCTTG 3285 32 100.0 36 ................................ ACCTACGATCCGACCACCGCGTCGGGACAGGTGCGG 3217 32 100.0 33 ................................ TCGGGGCCACGTTATAGCATGGCAAATTATGCC 3152 32 100.0 33 ................................ TCGCACCAGTGCGGCACGATGATATCGACGTCC 3087 32 100.0 35 ................................ TCCCGTCCTGGTGAAACTCTCCGGCGCCTCCGGCA 3020 32 100.0 36 ................................ GAGCATCTGGCCGATCTCGTCGAGGCGCGCCTGTGC 2952 32 100.0 33 ................................ GTGAAGGGAACGAAGAGAGTGCGGCCTTACGGC 2887 32 100.0 34 ................................ GGCGACCGGCAGATGGGATGCATCGCGGTACTCC 2821 32 100.0 35 ................................ CACGCCGTCCGGGAGACACCCGCGCTCCAGGCGGG 2754 32 100.0 34 ................................ GGCATCGGCGGGCGGGTTGTGCTCATCGACACCG 2688 32 100.0 35 ................................ CACCGCCCGCCTACACATCTGCCATCACGACGACA 2621 32 100.0 37 ................................ GCCCAAGCCGGTGATCGTCAAGATCGGCAACGGCGAC 2552 32 100.0 36 ................................ TACGTCGCCGCATTCGAGCCCGGGGACGCCCCGCAC 2484 32 100.0 39 ................................ GATTATATGATAGTTGCGGCCGCGGAGCATGCCGCACGC 2413 32 100.0 35 ................................ ACCGAGTGGTGGACCGCGAAGCAGGCGGGAGGGGC 2346 32 100.0 33 ................................ ATGAACTACATGCAGATGCACCAACAGTGCCAC 2281 32 100.0 35 ................................ CCGCAGCTCTACGACCGGCAGCGAGTAGATCGTAG 2214 32 100.0 34 ................................ CTCCCGGTCCGGACGACGAACGTCTCGATAAGCC 2148 32 100.0 35 ................................ AGGGCCTGGCACTGGGCACAGGTGTTGTCGTGCCC 2081 32 100.0 34 ................................ ATTCAGCAACCGTCCAGGGAGTCGACCCGAACGA 2015 32 100.0 34 ................................ GAGGGGGTTGCGCGATAATTTCGACTGGGAAACA 1949 32 100.0 36 ................................ TCGATCGCTCCGGTCACCTCCGAATCGGGGAGCACC 1881 32 100.0 34 ................................ CGGCACCTCCGGCACCCCGCACATCTGCTCTTTG 1815 32 100.0 36 ................................ GCCGAGAACATCTCCGGTAAGGGGCGGCTGTCGGAC 1747 32 100.0 35 ................................ CGCGTCCAGGACTACATCGACGCGATCAAAGCGGC 1680 32 100.0 34 ................................ AAGGAGAAACACGACACTCCGAAACTGGAGAAAC 1614 32 100.0 35 ................................ GCCGAGCGGGCGCTCGCCCGGGTCGGCATCTCCTC 1547 32 100.0 34 ................................ GTTACGAACGGCCCGGTCAGAATCTCCCCACTCG 1481 32 100.0 38 ................................ GCCGTCATCAGCCGCCGGTGGGCACAGAACCGTCTCGG 1411 32 100.0 34 ................................ TCGCAGGTGTTCTCATGCCCCGCTGTGAGCCACT 1345 32 100.0 35 ................................ GTCTGGTCGCTGACGATCACTTCCCCGGGAGCGAG 1278 32 100.0 34 ................................ CACCGGTAGATGAGGTCGTACTGCACCTGGTTGA 1212 32 100.0 35 ................................ ATCGAGCCGGTCTGGGCGACCACCTCGAAGACCGC 1145 32 100.0 36 ................................ CGGGAAGACCCGGACGTACTTGGCCTCGCCGAACTT 1077 32 100.0 34 ................................ ACGGGGTCTGCCTGGCAGGTAACACCGAGACCAC 1011 32 100.0 34 ................................ ATCCAGGAGGACCTCAACGGCGCGGTCGTGACGA 945 32 100.0 34 ................................ AAGGTCCGCACCCCCGAGGTCCGGCCCGACATCC 879 32 100.0 37 ................................ CACTCACTGGCGCGCCAGTCTCGGTCGTGACAGTGCC 810 32 100.0 34 ................................ TGCACGACGGCGTCGACGGTCGGGTGCACGGCCC 744 32 100.0 35 ................................ TAGGTCTCCCCCGTCGGTCGTGCTCCGGCTGTAGC 677 32 100.0 37 ................................ GCCGGGATGTCGGTGGGGCCGGTCAAGGCCTCGGCGA 608 32 100.0 35 ................................ CGGCTCGGTGATCCGCACCTGATTAAGCACGGGGA 541 32 100.0 34 ................................ CCATCGGGTCCGTCTTCATCTCCTGCGCCAGGAA 475 32 100.0 36 ................................ AGCGATGCGAACGGTAACAAGCTCACGCTTGCCCTG 407 32 100.0 34 ................................ CCATGAGAGAGAGATCTTAAAAAGTTACGATCCT 341 32 100.0 34 ................................ CCTCCGCGAACTGGAGGGCGCTGTCGAGACACTC 275 32 100.0 34 ................................ GGCCCAAGATTGTTTTTTCCCAACGATCCGTTTC 209 32 100.0 34 ................................ TGGCAGATGCAGCCGGGCGAGAATGTCCTGACGT 143 32 100.0 37 ................................ GAGAGTTTCGCCTGCGACTTCGGCACCGGAGCGCCGC 74 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 54 32 100.0 35 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : GCGTGGATTGAAATCGGACTCAACCGACGAGCGCCTGCAGCGGATCGC # Right flank : TGCACATTTTTGACACTCCTTTAATCTACCTCTACAGTCGCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 39-3401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIO01000024.1 Methanoculleus sp. MH98A c24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================================================================================================================================================================================================= ================== 39 32 100.0 34 ................................ GAGCATTTTGAGAAACGCCGGCGACGCCCGGGCC 105 32 100.0 34 ................................ TACGACGAGCGGTTCCCGGGCGTAGCACTGATCC 171 32 100.0 39 ................................ CACCGCGATCGATTCTGCCCTGAACCGCCTGGAGGAGTC 242 32 100.0 36 ................................ ACTCTCGCCGGCGCGATTCACAGCGTGACCGTGCGT 310 32 100.0 35 ................................ TCGACCTACATCGAGACGGAGGCCGGGGTCTATGC 377 32 100.0 35 ................................ GTGCCCTGAATGCCCCAACCCACCCTCAAGGGCAC 444 32 100.0 34 ................................ AGGGACATTGTGCTATCACCCTAAAATTGCCATT 510 32 100.0 34 ................................ CGGATCTCCTCCCGGGAGACGTCCCTGCCGTAGA 576 32 100.0 37 ................................ TGTGCTCCTGCAGGGCCTGCAGGGCCGCCAGGTCGCC 645 32 100.0 33 ................................ CGCCAGCCGGCTTTTGGCCATCCCGCTCTCGAG 710 32 100.0 34 ................................ AACCGGGGCTATTTCGTGCTCCGTCGAAATGATG 776 32 100.0 37 ................................ TGGATCTGAAATAGTGATGACAATTCCCGATAGTGCA 845 32 100.0 35 ................................ TCAGCGAGTGAGACGGCCTCGCGGAGATACCGCAC 912 32 100.0 35 ................................ ACGGAGATGGAGGGCTACCTGCGAGCCTGCGACTT 979 32 100.0 34 ................................ AATCCCTACGAGTCGTCAGAATCCTGCGTTGTCC 1045 32 100.0 36 ................................ TCGATCTAGGGCTTGGCGAGAAACCGTGCACGTGGT 1113 32 100.0 34 ................................ TGCGAGCAGCCGTATTTCGTCCTCAAAGCATGAG 1179 32 100.0 34 ................................ ACGGAGCCCTCGGAGCACCCGATCTCCTCGGCGA 1245 32 100.0 33 ................................ TTCAAATGGCGTATAAACACAACGTCTGATAAA 1310 32 100.0 34 ................................ CTGTACCTGGGCCTGTCATACATGCGCACCGGCG 1376 32 100.0 35 ................................ GTCTTCGGGGTCATCGCCTGGGCGATCGTCGTATC 1443 32 100.0 35 ................................ ACCGACGAGGAAGTTGAAAATATCAACAGGTATCA 1510 32 100.0 33 ................................ CCGCAGGTTAGCGGGTGGAATTTGCCGGATTGC 1575 32 100.0 34 ................................ CCTGATTGAGAAGGCCACCAACGAGCAAAAAGGA 1641 32 100.0 34 ................................ GTCCGGATCCCTGCGGTATCCTCGGACGCGGATA 1707 32 100.0 35 ................................ TCGTCATACTCGACGTGATAGGTCCGGGCGATCGC 1774 32 100.0 34 ................................ GGGATACTCCTCCTGCGCACCGACCTCCGGAAGC 1840 32 100.0 35 ................................ GATGAGGCGCAGATCCGGCGGATCGTCGCAGACGA 1907 32 100.0 33 ................................ TCGGAGCACCGCGATGTTCGAACACTTGATCCC 1972 32 100.0 35 ................................ TTATGCACTCATTTGGTAGAGCGCAGCCTTGGTAA 2039 32 100.0 34 ................................ AGCCGGGCACGGGTGATCGATGATCGCCAGGATC 2105 32 100.0 34 ................................ CACGCGCCCGGGCGCCGGTAGCGCCGCGTCCACG 2171 32 100.0 36 ................................ TGAGACTTGCACAGAAGGATAATGCGGTGAAACGAG 2239 32 100.0 36 ................................ GCCCTCAGCAACAACCCCCAGGTCGCCCCTGAGGTT 2307 32 100.0 36 ................................ CGGTGGAACGTAGTTGAGGCATTTTCGGCACATCCA 2375 32 100.0 34 ................................ ACCACGGCCTCTTCGGGGTCCTCGCCCGTGCCGG 2441 32 100.0 37 ................................ ATACCGTCACCTGTTCCTGATGCTCCACATCATCGTT 2510 32 100.0 34 ................................ TGGGCTGATATGTTCTCCTGCTCTGCGATCGCTT 2576 32 100.0 34 ................................ TTCGGCGTGGTGAGTGTGACGGACGCGTCCTGCC 2642 32 100.0 35 ................................ AAGCCGAAACGCTACGCGGACATCCTGCCGGAGAA 2709 32 100.0 36 ................................ CACGAGGGGGGCCGGATCTACGTGATGCCCACGGAG 2777 32 100.0 34 ................................ ACGGCGACTAAAGCAGCGAACGCGGTCGCACTCG 2843 32 100.0 36 ................................ AAGTTCTCCTGGGAGGCGTTTATCAACGACGACCTC 2911 32 100.0 36 ................................ GGGGAGATCTTATCCGAGGAGCGAGCCGGCGACCTC 2979 32 90.6 35 .......................AG.....G. GCCTTCAAGCAGCACTACTATGTAGAAACTTTCGT 3046 31 84.4 231 ...A.....-..AA.....T............ CATACCCTATTATCTGCCGTGTGGGCGTGGTCGAAAGCCACATCTCTCAAGGGTGTGCGCTTGAAACCATCAGACTTTCTGCCCATCGGCCTGCACTAATCTCAATCATATCTCTCGGGTTGTGTAGTTACTATGTGCGGGATGATCCAGGGGGCACCACACAGGCGCCACATCCCCATAGGCAGGTTGAGTGAATACATAATCGCCGCATGCCCAATTCCTGAACACATC 3308 32 78.1 30 .C.A........A...........G.G..TG. GTAGAGCCGCCGGGCGGTGATCGCGTCGTT 3370 32 78.1 0 ........G..TA...A.......G.....CC | ========== ====== ====== ====== ================================ ======================================================================================================================================================================================================================================= ================== 48 32 98.6 39 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : AAATATCCATGTGCGAGATCACGTCGACCACACGGGCCG # Right flank : CCCCACACATATGTCCTCTCCCCGATGCCGGAGACGCACGGATCGTGTGGAAAATTCTAAAAATGTGTCTTTGAACTTCGATGACAACTCGAGTGGAAATACAGTGGCCCGAAGATCACGCTCACGGGGTGGCACAATAACTCACATGCCGGCAGCACAATTCTGATGAAATGATCCCCTCGCCTAGAAATATCGCTTCGCGAAGATAATTTCAAAAAATCAATCGTTTCAAAAAACAGTGATGGGCTCGCTGAGATTCGAACTCAGGACCTCCGCCATGTCAAGGCGACGTCATAACCAGCTAGACCACGAGCCCGTGTCTGCCCGACGATCAATAAGGTTGGTGCTCCGGGTATAAAATTATTGCCACGCGCCAAAAACTGCCCCGTCCCGGCTTCGCCGCATCGGGGGGCCGGCACGCGGCAAAAACGGGGGTGGCGGTGATCCGCCCGATCAGATCTCGGCGTGCTTTGCCGTGTGGATGCCGTCGATCTTCTTGA # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2174-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIO01000301.1 Methanoculleus sp. MH98A c301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2173 32 100.0 35 ................................ GCACATTTTTGACACTCCTTTAATCTACCTCTACA 2106 32 100.0 36 ................................ GAGATCATCAAGGCCGGCCCTGCCGATGCCCCGCCG 2038 32 100.0 33 ................................ CAAAATATGCACACTCGATGTGCAGATGTACGA 1973 32 100.0 36 ................................ AAGGGTCTTCTGGTCTTTGATGCCGAGTCGTTTCTG 1905 32 100.0 35 ................................ GCAATGCATACGTATTGCGTATGTTAGACAACTCA 1838 32 100.0 33 ................................ GCGCGCGCTCCTCGGTGTCGGGTCCATGAGAGA 1773 32 100.0 34 ................................ ATCGACTACCAACCGTCCGACCTGACAAATATAG 1707 32 100.0 36 ................................ GACCTCCTCGGCGACGTCCGGACCGGGTGTGCGGAC 1639 32 100.0 34 ................................ CTCTATAAAGGACGATGATGGTAGAGGAGAGATA 1573 32 100.0 34 ................................ TCTACCAGCGTGATCTCGCAGGTCAGCGCCGTGA 1507 32 100.0 34 ................................ CATGCCGTCTCGGACGCGGTATCCCCGACGTAAT 1441 32 100.0 35 ................................ ACCGCGCGCACCGGACAGGTATTTATATTAGAGTA 1374 32 100.0 35 ................................ AACGACCCCGCGGTGCTCATCGTGCCGCCGTCGCT 1307 32 100.0 34 ................................ GCGTTTGTCAGCCCGACCGTCACGATTGACAACC 1241 32 100.0 34 ................................ CCCGGAGGCGTCGGCCGGAAGAACTCATCATACC 1175 32 100.0 33 ................................ GCGTAGTGAGTGGCCTCAAGGCAGGGAATGGAC 1110 32 100.0 34 ................................ CCCGGCTTCGGGGTCAATGAGACCGGCGGCGATG 1044 32 100.0 36 ................................ GCGCCGGTCCGGAGACGTGTTGATCAGCCCGATAGC 976 32 100.0 33 ................................ CGCACCACAGTGTATGTAGATGCCGATCTCCGT 911 32 100.0 34 ................................ CGGCCGGAGTACGATCCGGATGCCCTGGCAGAGA 845 32 100.0 34 ................................ TGAAATGAGAACAAATCCGTGGTGCGATACCTTT 779 32 100.0 36 ................................ GAAGAGGACCGAACCCGGATCAGAATCCTCGAAGAG 711 32 100.0 35 ................................ CTCAAGATCGGGGTGACGGTTGGCAACGCGGGACG 644 32 100.0 37 ................................ CGAAGTGGGTTCGGTTCCCGAAACGCTCCAGCCTCAC 575 32 100.0 36 ................................ TGGATCTTGGTACACGTGGCTCTTGTTAACTCCGAA 507 32 100.0 36 ................................ ATGTGAGGTGAAACCATGAAGAAAGGAAAAGAAATC 439 32 100.0 33 ................................ TGGTGGTGCTTATGCTGATCATCTTGTCCAGAG 374 32 100.0 37 ................................ CTGATCCCTCAAGATATCCGGTATGTTGAAGCGTTAA 305 32 100.0 34 ................................ CACGCATCATCCAGGGACTCACCAAAGGCTTTCG 239 32 100.0 36 ................................ CGCGTTGGTGCGCCGGTCGGGTGTCGGGGTCGCGCC 171 32 100.0 35 ................................ TCTGATGTGACGGCGAAAAAGAACGGCCGGACCCG 104 32 100.0 34 ................................ ATCCATGTGCGAGATCACGTCGACCACACGGGCC 38 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 100.0 35 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : TGAGAGTTTCGCCTGCGACTTCGGCACCGGAGCGCCG # Right flank : TGAGCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 835-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIO01000030.1 Methanoculleus sp. MH98A c30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 834 29 100.0 32 ............................. AATATAGAAAAAAGTCTCCCTGCTCGTGCCCT 773 29 100.0 32 ............................. AGCCCGGACCGCATGGACGCGCTTGTATGGGC 712 29 100.0 32 ............................. ATGTCAGAGTTCCGCAAGAAGTTCTCCTGCGC 651 29 100.0 32 ............................. GTGCCGGCGGGGCTCAACACCCCCCACGCGGT 590 29 100.0 32 ............................. GATTGCACGCAGGCTCGTATCGGCTCCGGCAG 529 29 100.0 32 ............................. GAGTATCAACGCGAATATAGCGCACTGTATGT 468 29 100.0 32 ............................. AGATCATAGCAGGGTATCACAGACTTGATGAG 407 29 100.0 32 ............................. GGGGCCGTGGTCTATCAGGTGCGGAACATGCA 346 29 100.0 32 ............................. TTAAAGGGCTCCTGGCATTCGTCGTCAAACGA 285 29 100.0 32 ............................. ACCCGGAAGCGACGGGGCCGGGGCCGGGTCGG 224 29 100.0 32 ............................. AGAAGGCCTTCGAGATCCTCGAAGAGGCGGCC 163 29 100.0 32 ............................. ATCTCACTGAGATCCTGATCGACTTTTTGCCA 102 29 100.0 32 ............................. GCCCGGTCCAGCCCGGTCGCCCGGGCGGGGTC 41 29 93.1 0 .............GT.............. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GAGTTCCCCACGCACGTGGGGATGAACCG # Left flank : CTGCCAAGCAGAAGTGTGCAACCTTTGAGGGATTTTGGCGGATTGGCACGCGGAGAGCCTGTTCCGGCGGCCGGTTCCGGGATGGCTTCCGGGCTCCGTTCGAGGCAGGGTATCGCGCAAAGCCGGGAGGGATCGATTGTATACCTGCGACCAGAACTGACCATGCGTCACGGTGCCCGATGAGATGAACCAGACCAACAAAAGCGCGCGAGCACGAGATGTCTGCAGGGGCTCTGCTGCCGGTCGAGGACTGTGCGAGGCGAAAGGAGGTGCGGATGGTCCAGGTGCGGCACCTCTCTTTTATTCAACTGTGTTGTCGGCTTCGCTGAAGAATTGCTTCTACTCTCATACCAGTTCTGTCTGCACACATTGGGCGGCACCAGAACGGTGATATGGTATTGCGATGAGAGTAATGGTATACTCTCCGGTAACGGAGGGTTTTCCTCAGAGAAATGGCCCGGATGGAAGGAACCATCCTTCCAGGGGTAATAAGGAGAAGA # Right flank : GGCGCTGGCCGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13-471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIO01000066.1 Methanoculleus sp. MH98A c66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13 29 89.7 32 .A...........AC.............. AGAAGGCCTTCGAGATCCTCGAAGAGGCGGCC 74 29 89.7 32 .A...........AC.............. ATCTCACTGAGATCCTGATCGACTTTTTGCCA 135 29 89.7 32 .A...........AC.............. GCCCGGTCCAGCCCGGTCGCCCGGGCGGGGTC 196 29 96.6 32 .A........................... GCGCTGGCCGACACTCACGGTTGCCGGGCGAT 257 29 100.0 32 ............................. GGACTCCAGGTCGTCCAGGACGCGCCGCACCT 318 29 100.0 32 ............................. TGGTATCGTCAGTTGTCGTTATACGGCTTGGA 379 29 100.0 32 ............................. GCATCCTGCGGTATCTCTCCGTGCCGGCCCTC 440 28 86.2 0 ...........-TT..............C | A,TC,C [463,465,468] ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.0 32 GTGTTCCCCACGCGTGTGGGGATGAACCG # Left flank : GGGCCGGGTCGGG # Right flank : CGTTCCCAAAAACCCGTCTCTTTGAGAGCAAAAAAACAACGTGCACACGCCTCTGCGTCGCCAGCTGCGCGATGAGCAGCACCCCCGTAGGGGTGGCTAAAGAGTGTTTGATGAAGTTCAGAGAGTGTCGGCCACTTGTATCCACTTCCCCGCCGGATCTTGCAGAGTGACGACGTTGACTCCATTGTACATATGCCGGGAAAAGCGGCGAGCGGGTCAGGAACGCCGACACGCCTGTATTCACCCGCGATGACTGCAAGGTCAAACCTGAGATTATGCGCGACAATCGTAGAACTCTTGTTTGCAGCCAGAGAGAGAGCATCAAGAGCCTCGCGGACGGGCACACCAGCCCGCCGGGCGTACCCGGTGGTGATCCCGTGGATCCGGGAGGCGCTCACCGGGATCGTGAAGCCATCCGGACGAATGACCCGGTTGTCCCTCTCCAAGACTTCTCCCATGACATCGCAGACCAGCCAGGCAATCTCAACGAGGCGGGGAGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGTGTGGGGATGAACCG # Alternate repeat : GAGTTCCCCACGCACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //