Array 1 5827-5198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPH010000003.1 Listeria farberi strain FSL L7-1699 NODE_3_length_485646_cov_86.562870, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5826 36 100.0 30 .................................... TGGACATTTTGACGAATGACATCACGCCGT 5760 36 100.0 30 .................................... AAGGAGTCGCTCAGTTTTACGGAGCTAGCA 5694 36 100.0 30 .................................... GCAAAGTTATGTCTGATGTACTTAAACCTA 5628 36 100.0 30 .................................... CATACAGACTCGAAATTACGAAGATAACGA 5562 36 100.0 30 .................................... TGATTCTTGCTGCTCTTTGTCGAACCAGTC 5496 36 100.0 30 .................................... TCATTGCTTATGGTGCTGGTGCGGTAAGAA 5430 36 100.0 30 .................................... GTGTAATGTAAAAGGTTTCACGCTTGACAA 5364 36 100.0 30 .................................... AGAAATTTGTATAAAATATTGTCCAATGTG 5298 36 97.2 30 .........................A.......... AGAGAGGATGAACTCTAAATAATCGGAAAT 5232 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACCGCGACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAATTGGATTTAGAGGAAGATGAAATTACGGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGAAGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGATTTTCGCAAGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATATAAATTTCAAATGATCTTTGAAAACTAAATAGATTTTATATGAACCATAAAATAAGTATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : ACATCTCTCAATCTACTCCAGCTAGAAAGAGTTACACCATTATGAAAGAGGGACTCCAAACATTTTAACCCAACCTGCAATTTCCAACTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGCGAAGAGCAAAAGAATGATTAGGAATCTAAAAGTTTGAAAATACTACACGATTACATTATAAAAGCTAGTAAAGAAAGCAATACCTTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCCATAGAAATTTTAACACCAGAAAAGTTGGTTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACATTTACATACAGCACTTAAAATAAAAAGGAGAAACCTTATGAAAAAAACCTCAATCATTTTTATTTTATGTATAACCGTAGTACTAACAGGATGCTCCACCGCCGAAAAACAAACAAAAATAGAATATACAGAAGCAACAGGGACAATAGAGCAAGTAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 63751-62688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPH010000004.1 Listeria farberi strain FSL L7-1699 NODE_4_length_391839_cov_85.412677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 63750 29 100.0 36 ............................. GCCTCTAAGTCAATGAATGGAATAATATACTTACGT 63685 29 100.0 35 ............................. AAACTTTGCTTTTTCCAGATCAGCGGATAACTAAA 63621 29 100.0 34 ............................. ATTTTGGCAGGTTTGAAGGTACGACAGATATCGA 63558 29 100.0 35 ............................. TATTTCTTGATATGCTCACACTGCCATGCGACAGC 63494 29 96.6 35 .......................A..... GAGTATCAAGAATACATCACAGAAGAAACAATAAT 63430 29 100.0 36 ............................. TCTGGAAATTCTGGCCGTGTCGGCCCGGAAGATATT 63365 29 100.0 35 ............................. CAAAGGGTCTGCTCACAGTCGTAATCTGTAAACAG 63301 29 100.0 35 ............................. ACGTTTATATCATCTATAGTCATAGTCACCCCGTC 63237 29 100.0 35 ............................. CCTGCTGTGCTTCCATCGGCATACGTGTAACGCCC 63173 29 100.0 37 ............................. AATGGTTTTCCAGATTTATTTGGTTTTCGTGGGACAG 63107 29 100.0 38 ............................. AGAAATATACCACCAGCAGTTGTTGAAGATGCTATATC 63040 29 100.0 36 ............................. GAAGAATATTCTTTCCCGCGCACTAAAGTTCCGTTT 62975 29 100.0 37 ............................. TAGCGACGAGATCAATAACATCATCCACCGCGGCACG 62909 29 100.0 34 ............................. TTGTCACTTAATCGTATTCTTTCTGTGATGTATT 62846 29 100.0 37 ............................. TCAGTTGTTGAAGATGCTATATCCAATGGTGTTAAGA 62780 29 96.6 34 ............C................ AGTGTAAGCACAGCAATTCAGACAGCTATAATCT 62717 29 93.1 0 .......................C....C | A [62692] ========== ====== ====== ====== ============================= ====================================== ================== 17 29 99.2 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGCGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTTTTAAAATCTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAACGTCTTCGATGCGAGTTTGGTATTTGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAAGTTAAAATAAATGCTAAAATGGTCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 78703-78283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPH010000004.1 Listeria farberi strain FSL L7-1699 NODE_4_length_391839_cov_85.412677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 78702 29 100.0 36 ............................. TCTGGAACCTTTTCCCCTTTTTCCAAAACAATTAAG 78637 29 100.0 36 ............................. AATTTTATCTTGCAGGTCCATTTCATCAACAACACT 78572 29 100.0 36 ............................. TAATCATTTTGGCCACATCGACGTTTAATGTGTCGA 78507 29 100.0 37 ............................. CTCGAAGGACTGGGACGTATACGATATTTTTATTGAC 78441 29 100.0 35 ............................. AAGTTTTCCTCGTCGAATTCATCCATCGCCCATAT 78377 29 100.0 38 ............................. TTTATTGCAAATAAAGGTATTGATGGAGCTATAACTGA 78310 28 79.3 0 ............C..CA......A-...G | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 97.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : TGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCGGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTACAAAACTCAAGAATCAAAGAAGTTATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATTTCCATTGGACGAATCTTAGGTCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAATATTAAACTCAAAAACAGTAACTTAGCATAGTGCTGTTTTTTTGTTTTTAGTAATCTGTCGACCAGCAGTAACGTAAAAAACACCGAAGACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCAGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTCATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTGCACGG # Right flank : CCCAATATATAATCTTTGCTCACATTTAAAAATTACATTTTCAATTTATATCCATTAAAATTTTGCTTTTACCAGCTATCTCAAAAACAAAAAAATAATCTGGAGGACATCGACATGAAAAAAGTTTTAATGCCACTTATGCTACTCGTAGTTTTATTATATGGTTGTTCATCACAAAACGAAGGGGTAACGAAAGAAACTGCCATTTCGAAGACGATCTCTATACGAGCGGACTACACTATTCCAGCAAATTTGGAGGAACTAACAGCGAGCAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACAATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAGAAAATAGATATCTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATGTTGCGCTTGAAAAAAATAAAGAATATACCTTGTTTCTTAACGAAAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //