Array 1 8573-9698 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDA01000078.1 Salmonella enterica subsp. enterica serovar 4,[5],12:r:- strain SAL3276 NODE_78_length_24895_cov_1.53821, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8573 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 8634 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 8695 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 8756 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8817 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8878 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8939 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 9000 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 9061 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 9122 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 9183 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 9244 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 9305 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 9366 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 9427 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 9488 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 9549 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 9610 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 9671 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 75475-73811 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDA01000012.1 Salmonella enterica subsp. enterica serovar 4,[5],12:r:- strain SAL3276 NODE_12_length_76518_cov_1.75581, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 75474 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 75413 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 75352 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 75291 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 75224 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 75163 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 75102 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 75041 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 74980 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 74919 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 74858 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 74797 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 74736 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 74675 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 74614 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 74553 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 74492 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 74431 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 74370 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 74267 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 74206 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 74145 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 74084 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 74023 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 73962 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 73901 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 73840 29 96.6 0 A............................ | A [73813] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //