Array 1 453987-454915 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015613.1 Serratia inhibens PRI-2C chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 453987 28 100.0 32 ............................ TCAGAGGTTTGGGTGACCTGGAACCCTGAAAA 454047 28 100.0 32 ............................ CTTAGTAAAGGGGTATTGCTATCCCATGAATC 454107 28 100.0 32 ............................ TATGAGCGTGAAAGTCTCAAGTTACGTCTGGG 454167 28 100.0 32 ............................ TGGTAACCGGCTCTCGGTATCAGACCTCGAAA 454227 28 100.0 32 ............................ TCCGCCGGTGCCGGCCGGTGTTGCAGTTATTT 454287 28 100.0 32 ............................ AGTGTCATCGGCATTGTAGGCACGGCACCGAG 454347 28 100.0 32 ............................ GGGCGCGATTGGTGGGGTTTCTACTCACACGC 454407 28 100.0 32 ............................ TAAATCCGCAGCGAGCTGTGTCGGGTTTATCG 454467 28 100.0 33 ............................ GGGTTAATCGTACTTATTTAGTTCATATCGGGG 454528 28 100.0 32 ............................ GACGCGGGACTCAGAACAAATCGAACATCTAC 454588 28 100.0 32 ............................ GTAAACGGTATGTACCGCCGCCGCTTGCACCC 454648 28 100.0 32 ............................ TTACGGTTCGATATCAGACGGCTAAGTCGGGC 454708 28 100.0 32 ............................ TGGCTTGGCTGGCCCTGGTAGCTTGACGCCCT 454768 28 100.0 32 ............................ AATTGTAATTCAATGGTTCCCGTCTTCGGATC 454828 28 100.0 32 ............................ TTGATATCGTTGCGGGTGGAGATAGTCCCCAT 454888 27 82.1 0 ...........C.........G.-..TC | T [454908] ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCGAGCCGTTTAACCGGTTTTAACCTCAGCGCTCGGCAGTAAATAATCCAATGAGGGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTTACCCGATATTCCAGCCTCAGCGCCGTCGAACGATCGCCCACCCGGCAGTGAAACGCCAGCGTCAGTTCCCCCTTTCCCCGTAACGCCTTGGCGCCTTTGCCCGCCTGATGCTGCGCCAGCCGCCGTACTACGTCGGTGGTGATGCCGGTATACAGCATGCCGTTCGGCAAACGCAGCATGTAGAGGTGCCAGGTTGGAATGTCCATCATTGGGTCCCAGTTGAGAGTTGAGCGTTACTATAGGCAACGTCAGGCAGCCGCTGAACCCTTTTTTTTCGACATGCTTTAACTCATTGATTTTAAATATGCTGAATAGGCGGGCTTAAAAAAGCCTTTTTGGCGGAATCGTGGGGTTACTCTTCAATAATCAGCTGATTAGCGCTAATCTTCAACG # Right flank : CCCGGCTTTCCCCATAACAACGGATTTACCAGGTAAAACATGATAGAAGAATATATTGGCTGAGTGGCTGATGATTATTTGACTATTTATTTTAATTGTAATTATTTCATATTAACTGAGAAATATAACAATGAACCATGCCCTGTCCCCCTCTGAATTAAAAACAATACTGCATTCTAAAAGGGCAAATCTGTATTACCTGCAATATTGTCGGGTTTTGGTAAATGGCGGGCGTGTGGAGTATGTCACCGACGAGGGCAAGCAATCCCTGTACTGGAATATCCCCATTGCCAATACCACGGTCATTATGTTGGGTACAGGCACCTCTGTAACCCAGGCCGCCATGCGGGAGTTTGCCCGGGCAGGTGTGCTGGTCGGTTTTTGCGGCGGAGGGGGAACACCGCTGTTTGCTGCTAACGAAGCCGAGGTGGCCGTTTCATGGCTCACTCCGCAAAGTGAATATCGCCCTACTGAATATCTGCAAAACTGGGTCAGCTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 463325-464792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015613.1 Serratia inhibens PRI-2C chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 463325 28 100.0 32 ............................ TTGCATCGGCGTATGTGCGCGCAGTCTCCGCA 463385 28 100.0 32 ............................ TTGCGAAGATGGTTCGTTACTCAAGCCAATCC 463445 28 100.0 32 ............................ CGATACACCAGCCGGGACCCCATTAACACTAA 463505 28 100.0 32 ............................ CGCACCACTCGCTGGCGCAGAACCCGGTAAAT 463565 28 100.0 32 ............................ AGAAGACAATGACGGGAGAAACTGTCTCCTTT 463625 28 100.0 32 ............................ GATGAGGCCAGCGACTCATGAGCGCCCTTCCC 463685 28 100.0 32 ............................ TGAATGCGCTCATCGAAAACACGATGGTCACC 463745 28 100.0 32 ............................ AATCAGATTAGTGAAGGCCGAGCAGCTGTAAC 463805 28 100.0 32 ............................ TTTGATAAACCCGCTAATGGTGTCAGTATCAC 463865 28 100.0 32 ............................ TGTATTTGTGCCGCCGAGGTGGAGAAATAGGC 463925 28 100.0 32 ............................ GGGTGGTGTGCCTGCTGCTGCGGGTGCAATGG 463985 28 100.0 32 ............................ TGTTACTCCTCCAGCACCGGGTGGTGTGCCTG 464045 28 100.0 32 ............................ GCGGTAGGTTCGATGCGATTGAGTGCCATGAT 464105 28 100.0 32 ............................ AGAAACGCGCTGCAAAAGTAATTCGTGCATTG 464165 28 100.0 32 ............................ GTGACCTGCCAATTATCAGCGACCCGGCAAAT 464225 28 100.0 32 ............................ TAACGGTGCTATCACATGCGGCGATGACATCG 464285 28 100.0 32 ............................ AGGCAGCGGATCAACATATCGCGCAACCATGC 464345 28 100.0 32 ............................ TTTATAAGTAGAGGCTGACGTATCCAGATTGT 464405 28 100.0 32 ............................ CAGACAGAGCCGTTGACGTTGCCATCTGGGGC 464465 28 100.0 32 ............................ AATAGCCAGCTTAGTAAAAACTGCATTAAAGG 464525 28 100.0 32 ............................ TGCAGACGCACAAACACGGTGGCGTAGAAACT 464585 28 100.0 33 ............................ CAATACATTGCTACCCTGCCCATTGCATTATGC 464646 28 100.0 32 ............................ AGGGGAATTGTGGTTCCCATGGCGTCTGGCCA 464706 28 100.0 32 ............................ ATCCAGCGATAGCCGTTCGGGTCTAGGTGGCC 464766 27 78.6 0 ...........C.C......-..TT..T | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GGCACTAATGGTGCTTGCAGAATACGGCTGGTTGAAAGGGCTACGGGATTATACCGAGACGGGTACTATCCAGGCCGTACCGGCAGCGGTTCAGTATCGAACGGTCAGCCGGGTTCAGGTGAAGAGCAGTGCTGAGCGCTTACGTCGTCGGGCGGTAACGAAAGGTTGGTTGACCGAAGAACAGGCGCGAGAGAGGATCCCGGTAGCGAATGAACAACGGACTTCTCTGCCCTTTATGTCGCTGAAAAGTCTCTCTACAGGACAAAGTTTTCGTTTGTTCCTGAAGCAAGGGGCGTTGCAGGAAAAACCCACCAAAGGAACATTCAGTTTCTACGGCTTAAGCCCATCCGCTACGGTACCCTGGTTCTAACCCTTTTTTTTCGGCCAGAGGTAACTGATTGATTTCGTTATCTCTGGTTGCTACATAAAAAATTAGGGTAAAATCGGTAAATACGGATGATGTTCTTTAATAATCAGTTTGTTACCGAGTTTTTTGTTCA # Right flank : TAGGTTTAAGGAACGTAAATGGATACAGATCTGGAACATATCCGCCATTTCCTTGGCAAGCAGCATGTGCTGACGCTGTGCGCCGGCAACGGCGTGGATATGTGGTGCGCCAACTGTTTTTACGTGTTTGACGCCGAGCAGATGGCGCTGTGGTTGATGACCGAAACCCACACCCGCCACGGCGAGCTGATGCTGCAAAATGCCAGTGTAGTAGGCACCATTGCGCCGAAGCCAAAGACTATCGCGCTGATCCGCGGCGTGCAGTACCGCGCCGAGGCGGTGATGCTGAGTGGCGATGAAGAGGCGCAGGCGCGTGCCCGTTACTGCAAGCGGTTCCCGATAGCCAAAGTGATGAAAGCGCCGGTGTGGCAGCTGAATTTGCAGGAAGTGAAGATGACCGACAATACCCTGGGATTTGGTAAAAAACTGCATTGGACGCGGGCCTGAGCACAACAAACTATACTTTTTCAGAGTAATCAAACGGTGGGAGAGTATATGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //