Array 1 630278-630916 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE698887.1 Escherichia coli HVH 10 (4-6832164) acXuv-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 630278 29 100.0 32 ............................. TCTGGGCCGGATTCGATCCCGCGCGTACCGGA 630339 29 100.0 32 ............................. TACAATCCCGCATCGAAACTGAATACCCCGAT 630400 29 100.0 32 ............................. TTGCCCAGGCTTTTGCGAAAATTTGTGATTTG 630461 29 100.0 32 ............................. ACACGGGGCAGATTGAGCAGGACTGCGACCTC 630522 29 100.0 32 ............................. GCAGCAGATTTACAAACAGATCGGAGATTACT 630583 29 100.0 32 ............................. CGCGGCCTGCGCTCGCGTAAAATCAGTTGCAG 630644 29 100.0 32 ............................. TCCGCGCAAGCCTATATAAACCAGATTGATCA 630705 29 100.0 32 ............................. TCCGCGCAAGCCTATATAAACCAGATTGATCA 630766 29 100.0 32 ............................. CGAAATCGCACGCGCTTCCCGCATGGGGGAAA 630827 29 100.0 32 ............................. TGTAAAAGTCTTGGTTTTGGCGCATCATTTGT 630888 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAGTAGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 657396-658461 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE698887.1 Escherichia coli HVH 10 (4-6832164) acXuv-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 657396 29 100.0 32 ............................. ATGATCCAGCGCGGCGGCTCATATGAAACTGG 657457 29 100.0 32 ............................. TGCGTGTCGGGCTGATTCGTCAGCTTCTTGGT 657518 29 100.0 32 ............................. AACGACGCACAGGATATAATGCTTGGCCTGGG 657579 29 100.0 32 ............................. TGACCGCCGATACGTTTGCTGGCGCGGCAGAA 657640 29 100.0 32 ............................. GTTACCGCGACTCATGCGACGATAAAAAATAC 657701 29 100.0 32 ............................. GTGCCGCGACTCACCAGATAGAAATAACGCAA 657762 29 100.0 32 ............................. GCTACCCCATTTGCACGCTGAGTTTGATTTCT 657823 29 100.0 32 ............................. GAGTAACCACGGTGGCAAAAATATCAGGGGTG 657884 29 100.0 32 ............................. CCACATCCAGCATTTGCTGAGGTGAAATCCAG 657945 29 100.0 32 ............................. TTAACTTCCTGCGTCTGCTTGGGGGAATGGCC 658006 29 100.0 32 ............................. TTAGCGTGTGATTTTCCGTGTTATAGGTTAGC 658067 29 100.0 32 ............................. GCGGGATTGTTCCGTTTGCCCGCGCCACCAGC 658128 29 100.0 32 ............................. GGGCCGACGGTCGCAGTGCTGGACCATTTCAA 658189 29 100.0 32 ............................. AAGGGGACGGCTACGGGACGCCGCCTATTGAC 658250 29 93.1 32 ............T......A......... GAAATAGCTTTTGCTGATCATCACGGTTTAAC 658311 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 658372 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 658433 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //