Array 1 1958-850 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFZ01000031.1 Vibrio cholerae strain N2728 NODE_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1957 28 100.0 32 ............................ ATTTTCCCGTAAAGGTCAGGCCGAATTTAAAC 1897 28 100.0 32 ............................ TGTGACTTCCTCAAGCAAATCTCGATAAGCTT 1837 28 100.0 32 ............................ CATTTACCGTTGACGTAACTACCGCCAGACTT 1777 28 100.0 32 ............................ GACCAGTTCCCAGCCGCCGACGCCCAAGGTGC 1717 28 100.0 32 ............................ AAACTTCCGTGTGAATCAGCCATCACGAGCCG 1657 28 100.0 32 ............................ TTATAGCCGTGATGAGTTTCTATTTGCTTATG 1597 28 100.0 32 ............................ ATTGAGGAAGGTTACAGCCATAATTCTTAAAA 1537 28 100.0 32 ............................ TCTAAAATGGTCAGACGTTTGTCGATTTTCCA 1477 28 100.0 32 ............................ GCCACGGTGATTTTGCGCCTCATATGCAGCGT 1417 28 100.0 32 ............................ GACAAACTAAAGCCTTGCGACCCTAATGTTGA 1357 28 100.0 32 ............................ GCCCTACGTGGTCGATGCTTGGGGGATGTTTG 1297 28 100.0 32 ............................ GGTATTTCTGGGTCATTGTTCACCGCATCCAT 1237 28 100.0 32 ............................ AATCAACGCCGGGGATTGGTTTGATAGGACAT 1177 28 100.0 32 ............................ AAACAGGGGCGCATACGTTGTACTTTATCTCA 1117 28 100.0 32 ............................ CCATTTTTTAGGTGCTTACAGCTCAGGTCTAA 1057 28 100.0 32 ............................ GCCACCGCTGCAAAAGAATATTTCAGCATTCC 997 28 100.0 32 ............................ TAGCGGCTTCAATTTATCGGTTGGCTGAGTTG 937 28 100.0 32 ............................ GTAATATTGAGGCTTGAGCGCCCCTCCTTTTG 877 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACTAATTATGGATTCCGAGAGCTTGGCTTACATCGAATAGAATTGACCGCATATTGTGACAACGTAGCGGCAGTCAAAGCGTATGAAAATGCAGGCTATCAGCATGAAGGTATCAAAAGAGAATCGGGCTATCGCAATGGCCGATTCATGGACAAAGTCCAAATGTCCGTTTTATCGCGAGAGTGGCCGGCCACATAACAAACGCCTCAAGAGGGACTGTCAACGCGCGGCGTTTCCAGTCCCAATGAGCCGCGGTAGTTTCGGTTGTTGAGGTTGAGTTTGGTGTTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTGTTGATTTATATTGATAATAAATCTAGTAAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAATTTTTATA # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTACAGTCCCAATGAACCGCGGTGGTTATGGTTGTTGTATTTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATGCAGTTATTTGAGCATGGATGAAAAAGTGATTATTAGAAAAGTAACAGTCGAAGATGCAGAGTCAGTATTGTCATTAATGTACCAATTAGATCGAGAGTCTAAATTCATGCTGCTTGAACCAGAAGAAAGGACAACCACACTGGAGCAGCAAATCCAAATTATTCACTCATTCAATGATTCATCTAATAAGGTGATGTATTTACTGACCAATGATGAAAGGGCTTTTGGTTTCATTGTTGGTGTAGGTAATACAGCCAATCGCAATAAACACTGCATGTCTTTGGTCATTGGCCTTCTCCAAGCTGTTACAGGCCAAGGATTTGGAAAAGAATTAGTAAACAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 108-1357 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFZ01000008.1 Vibrio cholerae strain N2728 NODE_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 108 35 100.0 37 ................................... TTGGAGAAAACCCAATGAGCTTACTTAAAGAGTTCAA 180 35 100.0 37 ................................... AGAACAGGTCGCGAGGGTACACAAGCTGTGCGTCGCG 252 35 100.0 36 ................................... CGTATGTTACTTTCGTAACGATCCAAACCATCTTTT 323 35 100.0 36 ................................... ATATTTACCATAGTTTCTTTAGGTACATATTTGTAG 394 35 100.0 39 ................................... AAAGCAACCACCTTCACAGAAATGTTCCAAGGGGCCACA 468 35 100.0 37 ................................... TGTATACAACTTGTCTATCTAGATTAGAACCTATTCG 540 35 100.0 34 ................................... TTATTTAGACGTTTTTTTAACTCAAACAGTTTAG 609 35 100.0 39 ................................... AGAAAGTCAGCTGTGTGCTGTGTCCTTGGTGCTGCGGTG 683 35 100.0 36 ................................... CAAGAACATCTCAACCAGCGGGTACAGGTAAGTTTA 754 35 100.0 38 ................................... AACACCAATTCCTAATATCCCACCAGCAATTACATCTG 827 35 100.0 34 ................................... ATCTTCTGCGTTTCGGGTGGAAGAGTTGAGAAAA 896 35 100.0 33 ................................... TATTTCTTTGGGTCTAAATCATCGATGTTTTCA 964 35 97.1 36 ..........G........................ ACGTTCCTCAGCTTGTGGATACTCTTCACCGAAAGA 1035 35 100.0 41 ................................... ATAACGTGATTCGATGCCACTCGGTCTTTTCCTTCTGTTCT 1111 35 100.0 35 ................................... CCCGATTGTCAGCATCAACAATACTTTCCATTGAG 1181 35 100.0 37 ................................... GATAGGTTATTGAAGTCTGGCATTAGTTCACATAACA 1253 35 100.0 35 ................................... TCGTATTTTCCTTGGTGTTCAGAAACCTCTTTTGC 1323 35 88.6 0 ...............................GTGT | ========== ====== ====== ====== =================================== ========================================= ================== 18 35 99.2 37 GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Left flank : ACCTTTAATCAAAGTGGGTAACTCTCTTCTTTTCAAATTGAAGTGTCAGATCTAGTCGGAACTAATACACTTTATCTTATTGAATCCGAAACTCAATTTAAGGGTAGG # Right flank : TTTTTTTGCGGGGGATTTGATTCTCGGTATTGATGGTTAACCTAGTTATACTTAAAGCAACAGCGATAACTTGGAAGTGGTATGCGTTTATTTTTGGATACAGAGTTTACCGGCTTGAAGCAAGATGCTGAGCTACTGAGCCTTGCATTGGTCGATGAGCATGGCAGGGCTTTTTATGCAGAGTGCCAAGCAAGGTATGGATATTCAGTGGATAAATGGATTGTTGAGCATGTGCTTGCTCATACTCGCTGGTTATCCTTACCTTCTGGCGCGCCAAGTGAGTGGTTGCAAGAGGGGGAGGTGCGGTATGGTTTCGATAGTGATGAAAATATTGTCCACCAGCTTAAGCACTGGTTAAGTCAGTATGAACGAGTCGAGCTATGGGCTGATTGTCCAGCTTACGATTGGGTGCTGTTTTGCCAGTTATTTGGTGGCTCGCAGTATTTACCTCGTCCTCTCTCTTATGTGGTGAATGATTTCGCTACCTTGCTGACTTTACA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 63005-60095 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFZ01000040.1 Vibrio cholerae strain N2728 NODE_89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63004 28 100.0 33 ............................ TTGCAAAAAAATTACTGAGCGCGGTTCCTGCAT 62943 28 100.0 32 ............................ TTGATGAGTTTTTAGGGTGGGGTAGCAAATGA 62883 28 100.0 32 ............................ GAAAAGCTCAACTAGGAAAGGTCGATATTCGT 62823 28 100.0 32 ............................ GTCGGGAGACGTAGGCACTTTTCACCGTCGGG 62763 28 100.0 32 ............................ GAACCCAGCACTTACAGCCCCAACCGTTGGGC 62703 28 100.0 32 ............................ AGCCTTGATCGCATCTTCTACCAGCGCATCAA 62643 28 100.0 32 ............................ CGTATGATTCAATCGAAACACTCTGTAAATAC 62583 28 100.0 32 ............................ TAGCAGAATGATGTGGTACAAATGCCCGATAC 62523 28 100.0 32 ............................ CGCTGGAAACATGGGTAAATGCACATGTGAAT 62463 28 100.0 32 ............................ CTAAGGATGCGTCGCTATCAAACTATAATTTT 62403 28 100.0 32 ............................ ATCAATCTGGCCTTCCAAATTCTGCGTGAGCT 62343 28 100.0 33 ............................ ACTCAAACCAGCGCGTGACCAATACGCGACCTA 62282 28 100.0 32 ............................ AGCCGCTTATTATGGGCCAGCGACATTCACGA 62222 28 100.0 32 ............................ ACTATGGGATGTACAACCTCTCAGGGGGAGAG 62162 28 100.0 32 ............................ GCACCCACTGTTTGGAATGTGACGACCCAATC 62102 28 100.0 32 ............................ TTAAAAGTCGCTGAACTCGAACCCGAGGCCGC 62042 28 100.0 32 ............................ TTGATAAGTTGATTGAGGATACGTTCAAGGAA 61982 28 100.0 32 ............................ CATAAGTGAGAGCGCTGTACGCTGTCGTTAAT 61922 28 100.0 32 ............................ CATGGGTGCGCGTATTCGACACCGAGCTTGCC 61862 28 100.0 32 ............................ TTTCAGTTCTGGCGGCAGTGCCTTATTCATTT 61802 28 100.0 32 ............................ CTATCGTCCAGACGGCGCGGCGGCGATCACTA 61742 28 100.0 32 ............................ TTGATAAGTTGATTGAGGATACGTTCAAGGAA 61682 28 100.0 32 ............................ GAACAGCGAGAAGTTGATTTCCATCGGTCCCA 61622 28 100.0 32 ............................ TTGGCGCGAGGTCACCAGAATGCGCGTCACAC 61562 28 100.0 32 ............................ GAAGAGCAGACGCAAGCCAATGTCATTGAAGC 61502 28 100.0 32 ............................ TTTTTTTGGGGTCGGCGTGTCGTAAGGCAAAG 61442 28 100.0 32 ............................ AGACGAATGAAAGTGACATGGCTCTGCTCAAT 61382 28 100.0 32 ............................ GTTCGTGCTGAAAAAGGTCAAACCGAAGAGCA 61322 28 100.0 32 ............................ ACTGAGCAATGTGAAGCTTTCGCAAAAAGTGT 61262 28 100.0 32 ............................ ATGATAGAGAGCTAACAGCGCCAAGTGGTAAA 61202 28 96.4 32 ...........T................ GTCAGGCACTGATGCAGCGTCTGGGTGACCAA 61142 28 96.4 32 ...........T................ ACCTTTGTTTCTTGCGGCCAGTTCGGCGATTG 61082 28 96.4 32 ...........T................ AAGCTGGCGAAAAGATAAAGAAACCATCATCA 61022 28 96.4 32 ...........T................ CAATGTTTCCAGTAGTTTAGGTAGTTGATCAA 60962 28 96.4 32 ...........T................ ATCATGAGTCAGCCCACCAATATAAAAGACCA 60902 28 96.4 32 ...........T................ ACCTAAAAACGATTTTCGGTTTAGATACGTTA 60842 28 96.4 32 ...........T................ TCCTATATCGCTTATCTGATGTCAGGGCTCGG 60782 28 96.4 32 ...........T................ CAAATGTGCGTAATTTTTGTTTCGCTTTGTTG 60722 28 96.4 32 ...........T................ TGTTCAATCCAGAGCAAGCAGCGATAAGGTTA 60662 28 96.4 32 ...........T................ GATCAAATCGCATTAGCTAAGCGCGGCGTGTT 60602 28 96.4 32 ...........T................ ATTTGGGGAAAGGTGGTTTCTGTTTGGGAAGT 60542 28 96.4 32 ...........T................ CTACTTCAAGGTGATGGAGACTTGTTGGACTC 60482 28 96.4 32 ...........T................ CTTCTTGGCTAACCGAACGGTTGCCATCGGCC 60422 28 96.4 32 ...........T................ GAGCGAAACACCAGCATCAGGGTCTCCGTCTT 60362 28 96.4 32 ...........T................ TAAATAAGCACCTCGGTCTAGCGTTGCTACAT 60302 28 96.4 32 ...........T................ TAACCTTGGTTTTTTGCTCACGCTTTCCGCCG 60242 28 100.0 32 ............................ TCGCAGGCGTTCATGTTATGAGGTTGATTGAT 60182 28 100.0 32 ............................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 60122 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 49 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //