Array 1 222216-220729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEX010000002.1 Campylobacter coli strain 2019/0916h NODE_2_length_400601_cov_112.117948, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 222215 36 94.4 30 .GG................................. ACTATTATCGTTTGCTTTTGTAAGTCCTAA 222149 36 100.0 30 .................................... CCTAACATACTAGCATTAGTATCTCTTGCA 222083 36 100.0 30 .................................... AAATCAGATCAATTTATGATAGATGCTGAT 222017 36 100.0 30 .................................... AATTTTTAAACTATTTGTGTTTGCTTCAAA 221951 36 100.0 30 .................................... CATTATGATGAAGGATTAAAGAAGTTTGTT 221885 36 100.0 30 .................................... TAATTATTTAAATCATCTTTCTTATTTCCA 221819 36 100.0 29 .................................... TTGTCAAGTTTCAAGCGAAGACGCAAAGC 221754 36 100.0 30 .................................... TCCATTCTCATAAAATATTTAGCCATTATT 221688 36 100.0 30 .................................... CAGAGATAACGAGTTTAATTATACTAGAGA 221622 36 100.0 30 .................................... AAAAGTGATAATCTTGCCTTAGGTAGTTTG 221556 36 100.0 30 .................................... GCAAAGTACAAGCCCTTTTCATAAACTATC 221490 36 100.0 30 .................................... TCAAAAACTAAAGAACCATCGGCTGTTTTT 221424 36 100.0 30 .................................... ATCGAGCTTGGCGGTATTATGGCAAATTCA 221358 36 100.0 30 .................................... AAGATTAATGTTAGATAACGAGTTATATTC 221292 36 100.0 30 .................................... AAATCGCAGGGCTAAAACAATAGCACGAGA 221226 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 221160 36 100.0 30 .................................... TCCTTTTCTCATAGGGCGAGGTTACTCTTT 221094 36 100.0 30 .................................... AATACACATTTTATTATATTTGATAAAAAA 221028 36 100.0 30 .................................... TAAGGGGTGCAACCCCTTACAAGCTCGACA 220962 36 100.0 30 .................................... TCCTTGTTTTTTAATTTATTTTTGTTATAT 220896 36 100.0 30 .................................... TCTCTATGATAAGAGACCACATTTATAGTG 220830 36 100.0 30 .................................... TAAAAAACCGCTAAGACAAAACTACCAGTT 220764 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.8 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCAGCCATGGTGATGTTTAATCTTTATGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTAGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA # Right flank : AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTCATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACACTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTATTTCTAAATTTACTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //