Array 1 123550-124127 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHYW01000002.1 Escherichia coli strain 1608190032 NODE_2_length_299933_cov_19.2534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123550 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 123611 29 100.0 32 ............................. GCGCAGGTTATCCGCTCTGTGCTCATTGACGT 123672 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 123733 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 123794 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 123855 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 123916 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 123977 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 124038 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 124099 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 149828-151381 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHYW01000002.1 Escherichia coli strain 1608190032 NODE_2_length_299933_cov_19.2534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149828 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 149889 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 149950 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 150011 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 150072 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 150133 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 150194 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 150255 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 150316 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 150377 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 150438 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 150499 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 150560 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 150621 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 150682 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 150743 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 150804 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 150865 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 150926 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 150987 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 151048 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 151109 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 151170 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 151231 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 151292 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 151353 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //