Array 1 175403-176089 **** Predicted by CRISPRDetect 2.4 *** >NC_017203.1 Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 175403 32 100.0 34 ................................ ACAAGATACGAGAATTTAATGACGTCACCCACAT 175469 32 100.0 34 ................................ TATTGTTACACCTTTAGAGTATCCGAGTAAAAAA 175535 32 100.0 35 ................................ ACAATGGGAAAGTGTTAGGTTATGCACGTTTTAAA 175602 32 96.9 32 .......................A........ GAAGATAGTAGAAGAAATCAAAAAAAGTGTAT 175666 32 90.6 33 .........T.........T...A........ TTTGTTGCTCCAGTCGTTATGATCGTCTTTGCA 175731 32 93.8 33 .......T.T...................... TAGGAGTTATTAATGGCTTTAGATGTTAGACCA 175796 32 90.6 34 .........T.........T.A.......... TACCTCGGGTTTATATTTATCTGGAATGCCCATA 175862 32 93.8 33 ........CT...................... TTTGCAACTAGCTCAATTGTTTTTCCGTTTTCA 175927 32 96.9 34 ....................A........... TACCTCGGGTTTATATTTATCTGGAACGCTCATA 175993 32 90.6 33 .........T.A.......T............ ATAATATCACAATTTTGACAAAATTCAGTCATG 176058 32 90.6 0 A.T.................T........... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 94.9 34 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Left flank : ATTGAAAATGGAGAAACAGAGAATTTATATCCAGGGATTAATAAACAAGGAATAAGAACATTTTACACGAAACATTCTACAGATGTTGAGAATGAGGTTGCTACTGCGATTCATGTGTACGTTGATGTATTAAAACAAATGAAGCGTGAAGGTGCTGAATTAGCAAGGAAGAAGTAGAACGATGTGATTAGAAGATTTAATAAATAAAATTCTTCATCATATTATAAAACTATACATTCTTGTTTATTAGTTAGCTAATAGCTATGAAAATAAAATTAAATATATCGGTGTACAAGAATGAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTCATAATGTATGATGGGGATTTATGATTTTTATACAAAATACTTTAATAAATAAAAATATTTTTATATTTTTGAATAGAATTAACGTATTTGTGATTGATTTTGAGCACAAATCGGT # Right flank : TAGTTTAGTAGATACTCAACTAGAAGTATCTATATCTGCAGTATCTAATACAAAAGTAAACAGTATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAAGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCTATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATT # Questionable array : NO Score: 8.46 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 184067-184231 **** Predicted by CRISPRDetect 2.4 *** >NC_017203.1 Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 184067 32 81.2 36 ......T..CTTGC.................. AAAGACCATTTGACCGAGAATGATAGAAGCAGGGAT 184135 32 100.0 33 ................................ TGGTTATTTTCCATTCGTGTTTTATGCTCCTCT 184200 32 93.8 0 ...........T........A........... | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 91.7 35 GTCGCACCTTAAATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGATCTTGGTAAGGATAAAGGTGCTGATACGATGAGTATGAAGTATCGTGCTGATTTTGGAGTATATGTCTTTTATGGAAGTATTAATACATAGTTAGCAAAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTGCATAAAGTTTGTTGGTGGGATCATAATTCAAAACTTGGTCAATACTCCTCTGCAAAAGTACACCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATTGATGATTATACTGTATTGGTACATGAATTAGATGGTTTAAAAGTTGAGATTATTGATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTCTATCAATTTATTAAAGGAAA # Right flank : TTTTAAGTCGTATACAACAGTAACACACAAAGAATATCGCACCTCTTGTAGGTGTGTGGAGTAAGGCTGATAAGATAATTGATAGTAATTTAGTGTCTCTGTTGGAGTAAGAGAACCTGTTTCAATTCATACAGCAACAAGTGTTGATCCGATTGATATTACTTGTATGCAGATTAAGAAAAGTGTAAATTCTGAGCTTGGGAAGGATAAAGGTTCAGATACAACGGGGATAAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTTATGGAAGTATTAATACACAGTTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGATGATGAAAAATGCACTGGTTCCATTGATTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAATTATAGAAGTACATAGAGTTTGTTGGTGGGATCATATAGTTCAAAACTTGGTCAATACTCCTCTGCAAAAATACATCGTTTATTAGAGGTTAAACGGAATATTGACGAGC # Questionable array : NO Score: 6.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTAAATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //