Array 1 12613-1349 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUB01000012.1 Bifidobacterium pseudolongum subsp. globosum strain 22506 Contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 12612 29 100.0 32 ............................. CACGGCGTGTCGTGGTCCGTCCAGCGGACGGG 12551 29 100.0 32 ............................. ACTCTTAGCGGTGAGTGCTTGTCTGGCTTTCT 12490 29 100.0 32 ............................. CCGGTCCCGCGATCGACGACTCCAACGCGTTC 12429 29 100.0 32 ............................. TAGCCCCACCCGAGACACCCGACCGGTTCCCT 12368 29 100.0 32 ............................. GCGGTTCAGGCGAGTTCGGTGGACACGTCCAC 12307 29 100.0 32 ............................. CAGTTCTACAACCTGCTCATGGTGTCCACCAT 12246 29 100.0 32 ............................. CAGGGCGCCGACAACCGGGTTCGAACCCTTGA 12185 29 100.0 32 ............................. CCGGCGGGGCCGGCTATGGCCTCCAGCAGATG 12124 29 100.0 32 ............................. TCGAGGCTCTCGGTGGTGCCCGCCAGCGTCCT 12063 29 100.0 32 ............................. GCAGGGACACATGTCTGACATGACGCCGCGCT 12002 29 100.0 32 ............................. CTGGGCCTCTGACATGGACGGCGTGGAAAGGA 11941 29 100.0 32 ............................. TCCCAGTCGCCGTCCTTGACGGACAGTGTGTA 11880 29 100.0 32 ............................. CCGTCGTAGAACGCACCGTTGACGTTGATGCC 11819 29 100.0 32 ............................. ACACGAGGAAGGCAAGGAGATGGCGCATAGGT 11758 29 100.0 32 ............................. AATCCGGCTATCCTGCCGGGGACGCCACGGAA 11697 29 100.0 32 ............................. TCCTCGACAACATCAAAGGGTTCTTTGGCATC 11636 29 100.0 32 ............................. AGCCCGGACGGCGGGTTCGCCAGCACCAAGAA 11575 29 100.0 32 ............................. CACCGCCTGCTGTGCCGCAAACGGCGCCGACG 11514 29 100.0 32 ............................. TCCGGCCCCGTCGTGCTGGTCCAGTTCGCGGA 11453 29 100.0 28 ............................. GAGGTCCGGGGGGGGGGTGACATTTACC 11396 29 100.0 32 ............................. TGCATGGTGTTGCTGGGGGTGACGCCGTCGTG 11335 29 100.0 32 ............................. TTGGAGCTTTTCGAACAAGTCCCCGATGACAA 11274 29 100.0 32 ............................. GAGCTGCGACCCGACGTGATGATTATCGACCA 11213 29 100.0 32 ............................. TACGCCACAGGAACCATCTGGACGATAGCCCG 11152 29 100.0 32 ............................. CGCCATCACCAGCAAGGCGATGGACACGATCG 11091 29 100.0 32 ............................. TCGAAGGCTGGCATCGCCGAGCAGCTCAAGAC 11030 29 100.0 32 ............................. GTCGCGCCCACCCTTATGGTCTGCAGCGATTA 10969 29 100.0 32 ............................. GAGTGGGCGAACCTCGTGGACGCCATCCTGAC 10908 29 100.0 32 ............................. GAGATTCTCGAGCGCCGTATGGCGGACACGTC 10847 29 100.0 32 ............................. GGCCGCCGGCGCCGGTCCCGGTGGAACTCCGT 10786 29 100.0 32 ............................. GCGCGGTCCGGGCGGATAGGCCATGCGGACTC 10725 29 100.0 32 ............................. TTCGCCGAGCACGTTCATCAGGTGCGGGATGA 10664 29 100.0 32 ............................. CCTACGGTCGGGCGCTTTTATAGCATTGGTAC 10603 29 100.0 32 ............................. AATCCGCTTAATAATCAGTCGTTCATCAATGC 10542 29 100.0 32 ............................. CATCGTCTTGAAAATCCACCATGTGACAGATC 10481 29 100.0 32 ............................. CGTAGCAAGTACATCAACCGCGTGACTGGAGT 10420 29 100.0 32 ............................. TTCGGTGTCGTGGCGCTCATGGTTCTCCTTAT 10359 29 100.0 32 ............................. ACCCACGCGCCCTCGCATTCCACCACGCTCGT 10298 29 100.0 32 ............................. ACCCGATCGCGGCAGCTCGTGCGCCTGAGCCT 10237 29 100.0 32 ............................. CCAACCTGAGCGAGCGTGCCTTCAAGCCATGG 10176 29 100.0 32 ............................. AACACGTTGGAAAATGGCGAGTCGGGGCCGAA 10115 29 100.0 32 ............................. AACTACCGCACCGGGCAGAAGGAGGCGACGCT 10054 29 100.0 32 ............................. CCGTTGCTCAGGCCGCGCGCGAAGCCCTGCAT 9993 29 100.0 32 ............................. GACGAGGTCGTGGACGCGCGCATCCTGCCGCC 9932 29 100.0 32 ............................. AGTTTCGCCACCTGTGCGCGCTGCGTCTCGGT 9871 29 100.0 32 ............................. CGGCCGTCGGTGACGAGCGTGTAGTAGAAGCA 9810 29 100.0 32 ............................. CGCAAGTGGGCAACGACGTGTGGGCTGATTGC 9749 29 100.0 32 ............................. CCGAGAGCGTGTAGTCGGCGAACTCTATCCAG 9688 29 100.0 32 ............................. CACCGCGCGCTCCATCCGCTACAACTGCGGGT 9627 29 100.0 32 ............................. TTGAGCGCCCCGTTCGCCCCGGAGAACTGCTG 9566 29 100.0 32 ............................. CGCATCGACACGGCCGTGCGCGAGCTGGGCAT 9505 29 100.0 32 ............................. ATGTAGCCGAACATCTCGCTCAGCGGCACCTT 9444 29 100.0 32 ............................. AAAAACGATACAAAGCATTCGAGCACGCTATA 9383 29 100.0 32 ............................. TAGCCAATGTGCGTGCGTGCGACCGACTTGCA 9322 29 100.0 32 ............................. GTCTGGGCGACAATCAGGAATATTCCATGTGG 9261 29 96.6 32 ............................C TAATGGCATGTTCACGTTCCATGAAGGCAGTT 9200 29 100.0 32 ............................. TCTGCGTCCTCGCATAGCTCCTCGGCGTCTGT 9139 29 100.0 32 ............................. CGAATCTTGGTGATGTGATCGCCGACTGGTGG 9078 29 96.6 32 ............................T CATCGTCGATCGTCGCCTGACCATGGATGCCA 9017 29 96.6 32 ............................A TACTTGGAAACAAAACAACAGACAATAACGGA 8956 29 100.0 32 ............................. CGCTCGCAAGCGTGGGGGACGTCGCGGCGTAC 8895 29 100.0 32 ............................. ATGGTGCAGCCGGTGATAACTCCGATCAGAAG 8834 29 100.0 32 ............................. AACGGGCCGAAGACCCCGATCATCCACGCTGG 8773 29 100.0 32 ............................. TGCAGGCCGGCAACGAAAAAACAAACGTGTTC 8712 29 100.0 32 ............................. CAGAAAGCGTATCGCCTCCGTAAACGGATCGG 8651 29 96.6 32 ............................T TGGCAACCAGACCAGCCTGTGAGAGCGCGTAG 8590 29 96.6 32 ............................T GCTTACACCGTCGTCGGGTGCTTCCACACCGA 8529 29 100.0 32 ............................. CCGGTCATGTACCGTTCGTAGGCGCGTGCGCT 8468 29 100.0 32 ............................. CCAATCGCAACTTTCAAAAATCCTGCGAGCCG 8407 29 100.0 44 ............................. CTCGCGAAACAACCCAGATCGATGGAGAGTTCAGCTCTCATTGG 8334 29 100.0 32 ............................. GGCTATTCGCATGTTCCGCGAGATGGTCGTTT 8273 29 100.0 32 ............................. GCTCCAACAGTTTTCGCAAGTTTCTGAGCTTG 8212 29 100.0 32 ............................. TGCGGAGATTTCGGTGAGGGAGGTGCAGCCGG 8151 29 96.6 32 ............................T CCGTCACCGACAGGTTGTCCACCTGCCCCGTG 8090 29 100.0 32 ............................. CAGGCGGGCTTAAATCCGTAGCTTACCCCAAC 8029 29 100.0 32 ............................. CGTACAATGTCCCTGTATCCCATGTCCCACGT 7968 29 100.0 32 ............................. GGGCGGCATGGAACCGCTTAGCGTGGACTGGT 7907 29 100.0 32 ............................. TAGGCCCATGGGAACTGTGAACGCGTCTTGAT 7846 29 100.0 32 ............................. GTGTTGTCATGCTTGATGTGAATGTGGCCCCG 7785 29 100.0 32 ............................. TACATCAAGGAACGCTACGGCAGCCCGTCCGC 7724 29 100.0 32 ............................. CCATGGGCGCCTCCGCCAAGGAAGCCGAGCGA 7663 29 100.0 32 ............................. TATGGGGAGGAAAATATCATTCCCGAAAACGT 7602 29 100.0 32 ............................. GTGTCGGACGTATTCGCCGGCCTGTTGCGCCC 7541 29 100.0 32 ............................. TACCCGAACGCAGGCTTACCACAGTGGGCGGC 7480 29 100.0 32 ............................. AACGATATACGCGCAATAGCAGCAGGCGTATG 7419 29 100.0 32 ............................. CACGAGCGAGAATAAAGCGGTGTCAAAAAACA 7358 29 100.0 32 ............................. ATACCGCCGTGCGGCGGGATATCGCTTCGGCA 7297 29 100.0 32 ............................. CGACTTGAAAATGCTTGGACTCCAGCCGCCCA 7236 29 100.0 32 ............................. TCGGTGAGACGTGACGGCCCGACCGGCGCGAC 7175 29 100.0 32 ............................. GCCCCGATAGTATCCGCAACTATCGGGGCCTT 7114 29 100.0 32 ............................. CACAGGCGAAGAACATGCTGCGCCAGATTCGA 7053 29 100.0 32 ............................. CCGTATCGTGCCGTCTACACGTGTTTTATTCA 6992 29 100.0 32 ............................. GCGCGAACCTAGCGAACGGCAACCGCAACGCC 6931 29 100.0 32 ............................. CATCAAGGTCAATACGTATGCGGGATTGTTCA 6870 29 100.0 32 ............................. ACCGTATTCGTCAAGGAACGCGGTTCGCAGCT 6809 29 100.0 32 ............................. ACGTTCGATGCCCAACGTGAGCGGCAGCACCT 6748 29 100.0 32 ............................. AAGTTTTATTATGGCAGTAAACAACAGCACCA 6687 29 100.0 32 ............................. AAAACAATGAAAAAAACATGGAAGAGCAGACC 6626 29 100.0 32 ............................. CCAGCGTCAATATCAGCCAGCACGACCAGAGC 6565 29 100.0 32 ............................. GAGGACGCATGATCACCCGAAGCGTGACCGTC 6504 29 100.0 32 ............................. TTTCCGCCCATACTTCTCGAACTCGTCACGCC 6443 29 100.0 32 ............................. CATTACATGGGCTAACGCCATCGAAGCCGATT 6382 29 100.0 32 ............................. CGTACGCTGGTTACCGGAGTGAACGCGAAGCA 6321 29 100.0 32 ............................. ACGACGGTTTTCGCAATTGGTGCGACGGCCGG 6260 29 100.0 32 ............................. ATGGTGAACCGTATAAGCGTGATATTCCAGCT 6199 29 100.0 32 ............................. GAACAACACCATGCATAACCACCGTTCGGCAT 6138 29 100.0 32 ............................. GAGACCAACCATGGACATCAATGCGCTCAGGA 6077 29 100.0 32 ............................. CATCTGCGCGTTGCTCAGATCGGTGAGCGGGC 6016 29 100.0 32 ............................. CATCGGCCTCATTGGCGGTATCGAAAACGAGA 5955 29 100.0 32 ............................. GCGCGCGCCACCTACATCGACCCCGCGCACCC 5894 29 100.0 32 ............................. CCCGACGTGCGGCTGATGATACGCCTTGCAGC 5833 29 100.0 32 ............................. GACAAGTGACGGAAGAAAGGAGCCGGACATGG 5772 29 100.0 32 ............................. GTCGAGCGCGCCCGCATAGCCGGGGAGACGCC 5711 29 96.6 32 ............................A ACTTGGTGCGTATGTTCGCGACTCCATGGCTC 5650 29 100.0 32 ............................. TAGCCAATGTGCGTGCGTGCGACCGGCTTGCA 5589 29 100.0 32 ............................. ACTAGATCGCGGCAGCTCGTGCGCCTGAGCCT 5528 29 100.0 32 ............................. GCAGTTTCAATCGAACCGGCAAACCGAACTTT 5467 29 100.0 32 ............................. CGCAAGTGGACAACGACGTGTGGGCTGATTGC 5406 29 100.0 32 ............................. TCGGTTGCCTGAATAATCGAAGATTTTTGTAC 5345 29 100.0 32 ............................. ACGCATCTAGCGGTACGTAGTGGGCGCGGCGA 5284 29 100.0 32 ............................. ATGTGCCGCTCGACATTGAAGAATAAAGCGGT 5223 29 100.0 32 ............................. TCGCCAGTCAGACGCAACACAACAAAGTCGCC 5162 29 100.0 32 ............................. GAACTGTGCGACGCGGGATTGATGCGCGTGGT 5101 29 100.0 33 ............................. TCCCAATCACGGGCACACAGAACAGGCGCACAG 5039 29 100.0 32 ............................. TTCCAATAATGCGTTATTGAATGTTCCATACG 4978 29 100.0 32 ............................. TCGTTGCCAAACTCAATGAAAACAAGTAAAAG 4917 29 100.0 32 ............................. GTCCTCGGCAACGGCTTCGACTACGTGACGCC 4856 29 96.6 32 .......G..................... TGGTTATGCGATAGGGTATACAGGCTCGCAAA 4795 29 100.0 32 ............................. ATGCCTTGCATATCCGCTCCTTGCTGGAATGT 4734 29 100.0 33 ............................. TACCAAAACAAAAAGTCGCCAGTCAGGCGCAAC 4672 29 100.0 32 ............................. TACCACATAATCACCTGACTAGCCCGCGTCAC 4611 29 100.0 32 ............................. GAACTGAAAGTATCGAACGCTTTGGCCGGCAG 4550 29 100.0 32 ............................. TGTTTACCATCGTAGGCGAACACACAATAGAA 4489 29 100.0 32 ............................. TATGCGGTATATCGTCCCGCCGGATTATGTCA 4428 29 100.0 32 ............................. CCGCGCCTACCCGGTATTCGAAGTATGCGGTG 4367 29 100.0 32 ............................. GCGGTCGGCGATTGGGACTACTCGCTGATCCG 4306 29 100.0 32 ............................. CCATCGACCACAACGCGTTCGATGCACGCCCG 4245 29 100.0 32 ............................. GCGAAGCTGTATAACGCTTTGCAGAACAGCGA 4184 29 100.0 32 ............................. ATCGCGAAATTCGTATGGGAGTGGGGCGTGCA 4123 29 100.0 32 ............................. TGGCCAAATTCAAGGGAGATGACGGGACAACT 4062 29 100.0 32 ............................. GACGCCAGCGCCTACCGCGTCCTGCTCATCCT 4001 29 100.0 32 ............................. CAAAGGGCTATTGCTCACGGGTCAGGTTCGAC 3940 29 100.0 32 ............................. GAGGCAAAACCATGTCAGGAATTATAGGCAGG 3879 29 100.0 32 ............................. GGCGGTGAGATGCTCGCCACAATGGCGGCTCG 3818 29 100.0 32 ............................. GCGAAATCATTGACGTTGCGGATGACGTCGAT 3757 29 100.0 32 ............................. CGGTCGGGGTTATCCCGTCGGAACTGCTCCCT 3696 29 100.0 32 ............................. GGGAGGGGTACGTGACGTGCCTCACCCACGAC 3635 29 100.0 32 ............................. ATCAGCAACGCGATCAACAAGTTCACCTCGAA 3574 29 100.0 32 ............................. GACGTGCTCGACACGTTCAAGAAAGCCCAGGA 3513 29 100.0 32 ............................. AAAAGAAAAGTAATGCCGGTATCTTTATCGTA 3452 29 100.0 32 ............................. CCATTGCCCCATATGCGCGCCGCTACGTGGCG 3391 29 100.0 32 ............................. GCGTCACGCTCCTGCACAAACAGGTCAAATCG 3330 29 100.0 32 ............................. GGCACGGCTATGCCGGCCAGTGTGAGCCCGTC 3269 29 96.6 32 ............................C ACGGTAGCGCCTTTATGGTAGTCTTTCCAGTC 3208 29 100.0 32 ............................. CGTCGTAGACGCCTTCGCGTACGAGGTCGGCG 3147 29 100.0 32 ............................. GCCAATCCGGACGGGCGCAAGGCGACGGTGCG 3086 29 100.0 32 ............................. ATCAGCAATGAGCCTGATATTGTGGTGTCGCC 3025 29 100.0 32 ............................. TACGGCAATGCGGCCGTCACGCCCGACCATGT 2964 29 100.0 32 ............................. CATACCGATGGCGTCCTCACGTGTGCTCGTGT 2903 29 100.0 32 ............................. CAGCTCAACAGCAAAGAATGCGTGCCCATCTG 2842 29 100.0 32 ............................. GCCAACACGTCACCAACCGCGAACGCATGTGG 2781 29 100.0 32 ............................. TAGGGGAGCTGCCGCGCCACAATCAGCGCGGC 2720 29 100.0 32 ............................. CCGGGCCGTCCTGTGTTGGCTGGCGCGTTGGG 2659 29 100.0 32 ............................. AGTTTGCGCCGGCGTGGTTGGCGCGAGTACAA 2598 29 100.0 32 ............................. TTGACGTGCAGGGTTCGGGTGCGGCCGGTCAT 2537 29 100.0 33 ............................. GTCTCGCCGTATTGGCCGCACTGTGCGTAGTGG 2475 29 100.0 32 ............................. CCGACTGGGCGAACGTCCTGAGTATCGCGCTC 2414 29 100.0 32 ............................. CCCACGCCTCAACAGCAGGATGTCCGCGAGCG 2353 29 100.0 32 ............................. TCCCATTCGCTTGTGGCATTGTTCGCGGGGAT 2292 29 96.6 32 ............................C GGTTCTTTTGGAACTTCTGTGTAACCGAAGAG 2231 29 100.0 32 ............................. ACACCGAGAGCATGGAGCGAACTAGACAAGGC 2170 29 100.0 32 ............................. ATGTCCGCCACTCGGCAAACGTCACGCAATGT 2109 29 100.0 32 ............................. ACACGATCGCGGCAGCTTGTGCGCCTGAGCCT 2048 29 100.0 32 ............................. ATCGACGCGGCCAAGACCGCCGCCGCCATGAC 1987 29 100.0 32 ............................. ACGCGCATGAGGAACGGCAGGTTGGTGACGGT 1926 29 100.0 32 ............................. TTGCCATCGCCCTGGATGCGGACGCGATCAAG 1865 29 100.0 32 ............................. TAATCACCGGCGTCGATACTCCACCACGGGAC 1804 29 100.0 32 ............................. TTGGCCTTCCAGCCGTTGGACCTCATCGAGAA 1743 29 100.0 32 ............................. CGTCGTAGACGCCTTCTCGTATGAGTTTCGCG 1682 29 100.0 32 ............................. GAGGCCGGCGACACGATCAACGACGCGATCCT 1621 29 100.0 32 ............................. AACATGCTCTACGGCACCTACCTCGACCCGTA 1560 29 100.0 32 ............................. GACAAGATCGCCGGATTCTGCGGTGGAGTCCT 1499 29 100.0 32 ............................. TGGGTCGTCGGGCCGCATTCCGGGAACGTCGG 1438 29 100.0 32 ............................. CACGGCGCGTACATGACGCCGGACACGATCCG 1377 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 185 29 99.8 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : GATTGTCATCGTGCTGACGGCTGCGCCTCCCAAGATACGAGGTCATCTCACACGATGGTTGTTTGAGATATCTCCAGGTGTGTATGTGGGAAAAGTATCAGCCCGTGTTAGAGAGTTGATTTGGGAGCAAATTCTTGACAATATCCGAGATGGGCGCGCCGTAATGGTATATTCGGCGAACAATGAACAGGGACTGGAGTTCAAAACCTACGGACAGGAGTGGTCGCCTGTTGATTTTGAGGGCCTTGAGCTGATTATGAGGCCTCATGATCAAGGCGAATCCAGCGGGAAATCTCAGGGCGCATCTCGTAGAAAAGGTTGGAGCAATGCATCGCGATATCGTCGTTTTGGTAGATAGTTGTTGCTGCGATGTTAAACTGGGGATTGCGTGCCGACGTGAGGAAGTTTGGAACCATGATGACGTTAGCGAAATGTGACCGACTGTGCAAATCGAATTTTTCGAGTATTGTCGGAGTGCGTTTTGCTAATGGAATCAGACT # Right flank : ATCTTCGACGGGCTGCCGATGCCGAGCACGCCGTTTGCCGGCTCTTCCCTTTTGAGTGTGTAAGGGCCGTGCTCCATCATTTGTTGTGTGAATGATAAAAAGAATGGGGCACGACCTGTCCCCGATTTTAGCGTGTTCGATGGTCAGTGCCTGTTGGGGTTGGACCGGTTGGGTCTTCGTGCTCGTTGCATGCGGTTCCTTGATCGCGGAAACGGTTCCGGCGTGTGGCAGATCCGATGCGAAACGGGAGACGAATCAGCGCGCGCGTGTGTCTCGTGCGGCTGCGTGTGCCGGGTGCGTACCTCACGCGAACGCACCGTCGTGCACGTGCCCCTGGGATCGGATGCGATTCATCTGAAGGTGCGGGTATGCACCTACGAGTGCGTCACGTGCGCGCGCATGTGGCACGACGGGCAAAAGACCGCGTATTGGGTTCACGATGGAAGTCACGTGCGCGCGCATGTGGCACGACGACTTGAAGGCGTTGGTGTCGGGACGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //