Array 1 34404-35038 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTW01000034.1 Aggregatibacter actinomycetemcomitans serotype d str. SA3033 contig0034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 34404 33 97.0 34 ................................C ATTACTTGCCTACAAGTGCAATGTAAGTTATAAT 34471 33 97.0 34 ................................T TACAAATTTCCAACCTATCCATTGATTGTAGGTT 34538 33 97.0 33 ................................C GTACAGTAATGGAAACAATGCCACCCGTAGCAG 34604 33 97.0 35 ................................T ATGGAAACTTTAGATATGAATAAAGCTGTTGAAAA 34672 33 100.0 34 ................................. ATCAATGGTACAAATTATAAATTAGGAATAGGTG 34739 33 97.0 35 ................................C TTGTCATATAGACGCTTGCGGAGTTTTTGTACTTC 34807 33 100.0 34 ................................. GCAGATCGTGGATGGGCAGAACACGGCATGATTA 34874 33 97.0 33 ................................T AATATTCCTTATGAAATGCAAACTTACCCACAT 34940 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 35006 33 81.8 0 .......T.....CA.....C...T......T. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 96.4 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : AGGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3313-157 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTW01000087.1 Aggregatibacter actinomycetemcomitans serotype d str. SA3033 contig0087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3312 28 100.0 33 ............................ ACATTAAAAAAATGCAACTATGAAGCGATTAGG 3251 28 100.0 33 ............................ GTGATTTGTTGTATAGGTCCAGTAGTACTTTAC 3190 28 100.0 32 ............................ GTTCAGAAATGATAAGAAAAACCCAAACATTG 3130 28 100.0 32 ............................ ATTTAACGAAAATCACATGAATATACAAGTAC 3070 28 100.0 33 ............................ AATGGCACATAATTTTATTGGTTTAGGAGAACT 3009 28 100.0 33 ............................ TTTATAAACGAAAGTACCAATCTTATTGTTGAA 2948 28 100.0 32 ............................ ATCGGAAGTAGTGTTAAATTTAATGGCTTACT 2888 28 100.0 32 ............................ AATACCCGAATCATGATGTTGACTCATGTTAA 2828 28 100.0 32 ............................ ATCACGAATTAACCGCAAAAACTGATCTGATT 2768 28 100.0 32 ............................ TTGTGCCCATGCCGGCGGCACAATATTTTGAT 2708 28 100.0 32 ............................ TGAAACAAGTTCTCCTAAACCAATAAAATTAT 2648 28 100.0 32 ............................ ATGAATGTTCATTAATTTCCATGAATTTCCAT 2588 28 100.0 33 ............................ CAACAGCAACCCCTACTCAAGCACCGGTTTAAC 2527 28 100.0 32 ............................ TATAATGCTGTGCGAGAAATTGTAGAAACCGG 2467 28 100.0 32 ............................ ATCTAAACTACCTCCAAAATGTTCCTTACAAG 2407 28 100.0 32 ............................ ATGATGATAAAACTACACAAGCTCAAGGTTCA 2347 28 100.0 32 ............................ ATTGAGCTTCTGAAAAAGTACTTAGAGGATAA 2287 28 100.0 32 ............................ AACAAACTGCACTGATAAGCAATTATTGGTTG 2227 28 100.0 32 ............................ TGCTCCACCATAAATCAAAGCTTTTATACCTT 2167 28 100.0 32 ............................ TACTCAAGCACCGGTTCAACAAGCAGTAGGTA 2107 28 100.0 32 ............................ TCCAAAGTACGGTATTGATGAAGAAATGCTTT 2047 28 100.0 32 ............................ TTTAATTGTGGCTATTGAAAATGGTTTACTAA 1987 28 100.0 32 ............................ AACCAAGACCAAAAACTTTCAGATTATGAAGT 1927 28 100.0 33 ............................ CTATAAAACAAGCATAGAAGCTTTTAAAATAAA 1866 28 100.0 32 ............................ TTTGCCACCTTCACTGATGATTTTCCCTGTCA 1806 28 100.0 32 ............................ TAACGCACAAAATAGTTAATCAAATTTGGGTA 1746 28 100.0 33 ............................ CATTGGTTGTTGCGTTGCAATACTATTAATTAG 1685 28 100.0 32 ............................ ATGATGACAAAACTACACAAGCTCAAGGTTCA 1625 28 100.0 32 ............................ AATAAATTGTTTGGTTTGTATTTAATTTAAAC 1565 28 100.0 32 ............................ CTCTGAACAGTTGTCAATTCTAAAATTATATG 1505 28 100.0 32 ............................ AATAATCCTCTCGGAAAGCAGTGTGTGCGGTA 1445 28 100.0 32 ............................ ATGGCCCCTATGTCAATTGGCGGCATATAATT 1385 28 100.0 32 ............................ AAAATCTGAATAAGCAAAAAGATTTACATATT 1325 28 100.0 32 ............................ AAGGAAAATCCATTCACCTTCAATTAGACCTA 1265 28 100.0 32 ............................ TACAATGTTAGACTTTTTTATTTCTCTTGTAC 1205 28 100.0 32 ............................ AAAAACAAAATGCGATTGGTTTAATGATTTGG 1145 28 100.0 32 ............................ ACAATACAAACTTAAGCCCAATTTGCGATAAT 1085 28 100.0 32 ............................ TAAAGCCACGTAATAACTGCTGATTAGATAAT 1025 28 100.0 32 ............................ TTCAGCAAATTTAAAATCACTTGTAAAAAACC 965 28 100.0 32 ............................ TACAGCTAATCCGTTCCCGACAGCACAACCGG 905 28 100.0 32 ............................ TCTGAAATAGCCAATATTTGCACCACTAAAAG 845 28 100.0 32 ............................ TCTGAAATAGCCAATATTTGCACCACTAAAAG 785 28 100.0 32 ............................ AGCCCCTGTAGGCAATGCTAATAAAGGATTGT 725 28 100.0 32 ............................ ACGTAAAGGAATTAGTTGCTCAAAATGCTGAA 665 28 100.0 32 ............................ ACATTGGGTTGGTTGGCGTTATATAACTACTG 605 28 100.0 32 ............................ ATTATTAATAATGATTCAAAATGGGAAAAAGA 545 28 100.0 32 ............................ TATTTTCCAATTTATCTAAATGTTTTTTATAG 485 28 100.0 32 ............................ GATAACTCTTTGTCGATTAGATTTGATACGCA 425 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 364 28 100.0 32 ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 304 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 244 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 184 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 53 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTTATAATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32874-33104 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTW01000092.1 Aggregatibacter actinomycetemcomitans serotype d str. SA3033 contig0092, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 32874 32 100.0 34 ................................ CGGAGTAATAGCAACTCAACGCGTCATTGACACT 32940 32 100.0 34 ................................ TCTCCCATTTACAAAACATTATTATATTTAATTT 33006 32 100.0 35 ................................ ATAGAAGTCAATTAATACACCAGACGGTCTAGGTA 33073 32 84.4 0 .T.....T.........A..A....C...... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 96.1 35 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATCAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : TTACTTGGCATGCGTTTTTTATGGGTATTTAACCGATTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTGCCCTGCACGATTTTATACAATCCTTTTTCAATATTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCATTTTTTCTCTCATAAAACAAAAGCTGAACCTTTCCGAAGATCCAGCTTTTCTTTTATCTATTTATTACGCTAATTCAGCGCGTAATTTTTTCGTGACGTCAACCATTACTTTCAGTTGTTCTAGGGTTTCTTTCCAACCGCGGGTTTTTAAACCACAGTCAGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //