Array 1 26-447 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLMI01000127.1 [Clostridium] cocleatum isolate IMSAGC_017 IMSAGC_017_contig_127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 26 30 100.0 36 .............................. GCAATATAACCTAACGCAAAATATTTACGATTTTTC 92 30 100.0 35 .............................. GTTTATTCGTGGATACAATATCTTCATCTGTTTCT 157 30 100.0 36 .............................. AATGTCTTAGGCAGTTCTTCATTCTCATCGTAGTGG 223 30 100.0 35 .............................. AAATAACTGATAAGAAAGCTGTAATCTTTACGTAT 288 30 100.0 36 .............................. GATGATTCGATTTTAACCAACGAAAATTTTCTGTAT 354 30 93.3 34 ............................GT TTTTATCCATACATTTTATTCCTTAGTTCTCTTA 418 30 73.3 0 ........C......GTAC.A....T...T | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 95.2 36 GTTTAATAACAACATAAGATGTATTGAAAC # Left flank : GAAGTTGAAAAGTGACAGACAACTTG # Right flank : TAAATTTTAGTAATAATTTTAAATGTCTTTATTTTGTTTTATAACAATATAATGTATTAAAAAATTGTGAATAACTTGTGACTAAAGTGAATATCTTTCAGTAAGGATAAATATCGTTATTTTTTGGTTCAGTTATACTATGTAATAAATCCTAAATTCTATGATTATTATCATAATATGATAACATCAATTTTAGATAGAGGAATATATTTTCTAAATTTGAGGTTGTTCATTAAGTTACAAAAATCTTATCTGAATTTTTTATTTATGTGCTGATTTTCATTGTTAATGCTTTTTTGAGTTTATCAATATGATGAGATATTTTGTAATATAATTATTAAAAACTAATTTTTAATAAGACATAGAGTTATTTATTTTTATATTTTTGATTTTAGTTAATAATTTTGATACGATTATGTAAATGATGTTGAAAATACTATTGTGGCAACTGTTAATGGTATATAAAGATTATTTTTTATATGGGAATTTTTTTAAGTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-90.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 11321-12412 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLMI01000177.1 [Clostridium] cocleatum isolate IMSAGC_017 IMSAGC_017_contig_177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 11321 36 100.0 30 .................................... AATGATGAGGTTTTTGGTTATCAGGAAGCA 11387 36 100.0 30 .................................... CTCACATCTGATTTTACCATCTGTTTGATA 11453 36 100.0 30 .................................... TTATTTAACGGACTTCCTGAAGATGTTCGT 11519 36 100.0 30 .................................... TTTAATAACTTTGCTCCATTCGATAAGTCC 11585 36 100.0 30 .................................... TTTTGGATATGACATTCAACATGTGGTTCA 11651 36 100.0 30 .................................... AATAATCAAATCATAATATCCTGTCGGGCT 11717 36 100.0 30 .................................... AGTCAATCCAGGAACGCTATACATCGGCAT 11783 36 100.0 30 .................................... GAAAAAAATTTCATTATCACAAACTGCAAT 11849 36 100.0 30 .................................... GTCTCATCTAAATCATAATCTTGTGCTATA 11915 36 100.0 31 .................................... CCCCCGTTAAATCATCAACGAAACTAGAGTG 11982 36 100.0 30 .................................... CAAGCAGTTCATCAAATATAAATGCAAGTG 12048 36 100.0 30 .................................... ATTACTTTTTTGTTCCTAATCGTTTGGTTT 12114 36 100.0 30 .................................... TTATTTAATGGTCTTCCTGAAGAGGTTCGT 12180 36 100.0 30 .................................... TTCCAATCCAAAAACTATAATGTGATAATG 12246 36 100.0 30 .................................... AATGGAAATAGAATATTCAAATGAGTTATC 12312 36 100.0 30 .................................... AACAAAAATAAAGATAATTGATCCTTTGCT 12378 35 86.1 0 ......................-...C..A....GT | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 99.2 30 GTTTTAGAGTTATGTAATTTAGAATAGTAGCAAAAC # Left flank : GTATTAGCAAAAATATATATGACAATAAAAAATAATATACTAGATGATGTAGATAAAGAAAATACTCTTTTAAATGATATAAATAAAGTAAATGGATTATTTATTGAGGAACTGGAAAATTATAATTTAGATTATTCTTATGAGACGAATATAAAGATAGAAAATTATTTAAAACTGTTAAATTTAAAAATCGTAAGTTCTGGAGAATCAGTATTTAATAAGATGATAGACTTAATTGAGATTTATTCGGAATTGTTTAATGAACATGTTATAATATTTATAAATATTATGTCATATTTGAATGATGATGAATTAAAGGAGGTTTTAAAATATAAGAAATATAAAAAATTGAAATGTATTTTTATTGAGAATGGTTTTACTAGAAATATAATAGAAAATACGTATATAATAGACGATGATTTATATATGTATAAATTATAATACTATCTAAATTACAGATGAAGTCGTTATTCATTTATGCTTTTAAAACCTAGTTTGAG # Right flank : TGATTTACAAAATAAATTGTGATATAAAATATAATCAGGATAAAATCACATTTGAACAAGAAATTAGAGGATTGCTTGTGAAAGAATATTATATACAAAAGAATCTATCTGTTTCCTTTTTTTAGTTAAGGTATGCAAATTGCTTTTATATTTGTTGGAATTATTTTGTCGTATTTCCTGGGAAATATGGAAAGAAGGTGGAAATATGTTGAAAAAGATAGTTGGATGGTTTGGGTTGATCAATCTTGTTGTTTTTATAACAGTGTTTAAAAGACCAAAAAAGAAGTATGAATATGTAAAATATGATTGTGCAATAGTTTGTGGTTATCCTGCTAATAATGATGGTAAACCATCAAAAATTATGAAATCACGAGTTGATAAAGCCATTGAATTATATAATGAAGGAAAAGTAAAGTTTATTATCTTTTCTGGGGGTAGTGTTAAAAATAAATATAAAGAAGCAGATATTATGGAAAACTATGCACTTGAATTAGGAATTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGTAATTTAGAATAGTAGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 7588-6904 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLMI01000217.1 [Clostridium] cocleatum isolate IMSAGC_017 IMSAGC_017_contig_217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7587 30 100.0 35 .............................. CCTCTTAATATAAAATTAACTGATAATCAGTTTGT 7522 30 100.0 37 .............................. ATTCATCTATCCCTGCAGTAGTTCCAATAGCCCTTAC 7455 30 100.0 36 .............................. GATAAAGATCTATTTGATGGGGAAGATTATTTTTGG 7389 30 100.0 35 .............................. CCGCTTATTGGTATTCTTTGATCAATACAGTGGTT 7324 30 100.0 35 .............................. TTTTTTCTTTTATAAGTGGTTCTGTTTGCGGTTAA 7259 30 100.0 35 .............................. GAAGCAGTTATAAAACCTTTTTTCCAACATTTAGA 7194 30 100.0 34 .............................. TCCATAAGTGGGGTTAACAAAGTCTGTATTCTGG 7130 30 100.0 36 .............................. GATAGTGCAGAGCGTGTTAGAAAACATAGGAAAAAC 7064 30 100.0 36 .............................. GCTTGTAGGAGTTAAATCAATAGCTCCCAAACAGTA 6998 30 100.0 35 .............................. AATCTCATATTGAAGCTGCATCTCTGCATATCTCC 6933 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 100.0 36 GTTTAATAACAACATAAGATGTATTGAAAT # Left flank : AACCATTTATACCTTTTTCAATAAAGGATAAATATTAATGAAGATAAAAAATTATAATTATGTAATTGTATGTTACGATATTGGGGAAAAAAGAGTAAATAAAATATTTAAGATATGTAAAAAATATCTTCCTCATTATCAATATTCTATTTTTAAAGGTCCCATTACACCTTCTAAATTGATTTTATTGAAAAAAGAACTACAAAAAGCTATAAATAAAAAAGAAGATTGTGTTAGTATTATTAAATTACAAAGTGAAGATTCGTTTGATGAAGAGGTTTTAGGAAGTCAAAAAGAAGAAAATAAAGATAGTTTAATTATATAATTTACCAGGTGAATTTATTAGTGAAACTTCTAAAACCATTGGGAGAGTAGGAAGTTAAAGGAATTTTACTAAAAAATATAAAAAAATAAAATTGCCTGGTAAAAAAATAGAAAAGTGTTGATATATAAAGGTTTTGAGGTATAATAGAATACGAAAAGTGGCTTATTTACTAGGG # Right flank : TATATTTTTTTTGCATTAGTTGTCTCAATGATTTTAGTTTAGATATATTAAAATTCTGTGAGGGTTAAACTTAAAATATTTATGATATATACTATAATTAGAGAGTAATTAATAATATGAATAGCATCATTTGATAAATTGTGGTAAACTTTGAAACATGGAGTGTAGGTATGAAGAATAAATATGTGGTTTTAGATTTTGAAACGACTGGAATAAACAAATATTATGATGAAGTAGTCCAAGTAGCAATAATTAATCAGAATGAAGAAATTTTAATTAATGAATTGTGTAAACCAAAACATCATTTTACTTGGGTAAATGCACAAAAAATACATGGAATATCTCCAGCAGTGGTAAAAGATAAACCTAGTTTTGAAAGTTATATTGAGATGATAAAGAATATATTTGATAGTTGTGACTTTATTGTTTGCTACAATGTTGCATTTGAGCAAGGTATATTAAAGAATTATGGGATAAATATAGATAAATATAAATTTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 40-199 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLMI01000023.1 [Clostridium] cocleatum isolate IMSAGC_017 IMSAGC_017_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 40 30 100.0 35 .............................. TTTTCTTTTTTATTTTTGTTACTTCGCTGGTGTAA 105 30 100.0 35 .............................. TATCAAGGTTCTTTCTAACAGAGAGGAGCATATGA 170 30 90.0 0 ......................T..A...T | ========== ====== ====== ====== ============================== =================================== ================== 3 30 96.7 36 GTTTAATAACAACATAGGATGTATTGAAAC # Left flank : GGGGTATAATAGAATATGAAAAGTGGCTTATTTACTAGGG # Right flank : TTTAATTAATTTAAAATAAATATAATAAGTTATATGCTTGTGAAGCTTTGTTTACAGGTTTTATGGGCAGTTTATTATCTTTGAACTCAAAAGTTATATAAATATAATCTTTATTTTTAATAAAGAAACAGTTTAGTTTTTTATTATTTAGTTTAAGATTATAAATGAATAAGTATAATTTGACTTGAATAATTGTATAATAAAAGGAAAGATAAGTATTTTTTATTGCATTGCCTTAGTTAAGAATATAGGCTATAATGAGGTAGAAAAATGGGGTGAAATTATGGAAAAAAGTGCCGTTAGAATGATTGCACAAATGATAGCTTTGAAAAAAATAGAAGTATTACTCTTAAAAAAGTACTATGAAGGTAATAGCCCAAGGTTTTATTTACGTGATTTAAATAGCGGTGATTTAAAAGAAATAAAAATTTCAGGTAAATATGTGGAAGAACAATTTGTACATTACTATTTCGATGATATTGAAATAGATTTTTGTCGTA # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAGGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 20485-20064 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLMI01000069.1 [Clostridium] cocleatum isolate IMSAGC_017 IMSAGC_017_contig_69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 20484 30 100.0 36 .............................. GGACATAACGTCAATACGTCCTTGACTTCGCCCGTT 20418 30 100.0 35 .............................. TGATATTTATTAACCTTTAAAGGTTTTCCACCAAA 20353 30 100.0 36 .............................. CTATATATAAAATTTTTATTCATTTTTTCAAATCAT 20287 30 100.0 34 .............................. CAAAGATTATGGAAAAATACTGGAAAATTAGCAA 20223 30 100.0 34 .............................. ATCATTTTGTAATATTGGATAACTTTTTTTTCTG 20159 30 100.0 36 .............................. CTAATATTATCTAGCAAATTATCTCAAGCAAAGGAG 20093 30 83.3 0 ................G......CCT...T | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 97.6 35 GTTTAATAACAACATAAGATGTATTGAAAC # Left flank : TATGAAAAGTGGCTTATTTACTAG # Right flank : TAAGACTTTCAGTAAATATACTGGAGTTTTTTATTATTTTTTAATTACTAAGGAGTAATGTACTGTTTTAATAATAGTTTTATATTAATAAAAAGGATTTAAATTTAATATTGTGATGTTAGTAATAATATTTATATTTCATCAATATATAATATTAGACAAATTAATTATATAATTTTATAATAAGTCTGGGGGGATAAAATAAATGAACAAAATAATAAAAGATATTTTAAAGAATATATTTAAAGCAGGGATTCTAATAATTATATTATTAGGAATTACTGGTTGTGGGTTAAGTGATAAACCAGAGTTTGAATTAAAAACTGATAGTATTGATTTGGAATATGGTGAAGAGTTAGATGATTTTAAAACATATATAAAAACATCTGATATAGATGAAGATAGTTTAGAGTATAGCTGTGATACAATTAGTGAAAGTAGTGTTTTTCCTGAAGTAGGTAAGCATGTTATTACATATGATTATAAAGGAATAATTAGGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //