Array 1 170928-168830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMOK010000001.1 Bifidobacterium longum strain BSD2780120875_150330_F5 NODE_1_length_377795_cov_56.8289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 170927 36 100.0 30 .................................... ACTCGGTGGCGAATGCGATGATCGAGATGC 170861 36 100.0 28 .................................... TCCACCGACGTGATGGACAACTACACGA 170797 36 100.0 28 .................................... CGCGCCTTGAAGCTCCGATGGTCGATGA 170733 36 100.0 29 .................................... AACCGTCGCCTGCTCGCGCTCAACTTCGA 170668 36 100.0 29 .................................... AGGTGCTTTAGGTACCATTTGAGGTGCTT 170603 36 100.0 29 .................................... ATAGGGTACCTAAAGTACACGGATAAAAT 170538 36 100.0 29 .................................... TTGTCTGTAAAGTCAACTTTCATCGTCCC 170473 36 100.0 29 .................................... ATGACTCCATGCACCCTGTCGATACCGGG 170408 36 100.0 28 .................................... TGTTGGCCAGCACATTCTTGCGACTTCT 170344 36 100.0 29 .................................... TATTTGTACCGTTCAAGCAAGTGCATTCA 170279 36 100.0 28 .................................... AGTAACGCCGTAACCCTCGCTAACCCGT 170215 36 100.0 28 .................................... ACCAGTTCAACGCTCAGGCATTACGCCG 170151 36 100.0 28 .................................... ACCGGTATGCCTTGTGACGGGGTGAAGT 170087 36 100.0 28 .................................... AAGATTCTGATACACAAAATTATCATAA 170023 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 169959 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 169895 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 169831 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 169766 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 169702 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 169638 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 169573 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 169509 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 169445 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 169381 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 169316 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 169251 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 169186 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 169122 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 169057 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 168993 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 168929 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 168865 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 366805-367149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMOK010000001.1 Bifidobacterium longum strain BSD2780120875_150330_F5 NODE_1_length_377795_cov_56.8289, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 366805 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 366871 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [366877] 366955 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 367015 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [367063] 367063 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 367120 27 85.2 0 ..............C.....C....CG | GC,C [367138,367142] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //