Array 1 189378-187769 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIO01000007.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1769 1769_7_length_213177_cov_65.5372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 189377 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 189316 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 189255 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 189194 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 189121 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 189060 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 188999 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 188938 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 188877 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 188816 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 188755 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 188694 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 188633 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 188572 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 188511 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 188450 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 188389 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 188328 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 188225 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 188164 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 188103 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 188042 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 187981 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 187920 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 187859 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 187798 29 96.6 0 A............................ | A [187771] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 206762-205636 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIO01000007.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1769 1769_7_length_213177_cov_65.5372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 206761 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 206700 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 206639 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 206578 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 206517 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 206456 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 206395 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 206334 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 206273 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 206212 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 206151 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 206090 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 206029 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 205968 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 205907 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 205846 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 205785 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 205724 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 205663 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //