Array 1 226488-224381 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQM01000008.1 Salmonella enterica subsp. enterica serovar Braenderup strain 106 NODE_8_length_249075_cov_20.4696, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 226487 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 226426 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 226365 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 226304 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 226242 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 226181 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 226120 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 226059 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 225998 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 225937 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 225876 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 225815 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 225754 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 225693 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 225632 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 225571 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 225509 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 225448 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 225386 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 225325 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 225264 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 225203 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 225142 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 225081 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 225020 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 224959 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 224898 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 224837 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 224776 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 224715 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 224654 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 224593 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 224532 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 224471 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 224410 29 89.7 0 A...........TC............... | A [224383] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 243750-242746 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQM01000008.1 Salmonella enterica subsp. enterica serovar Braenderup strain 106 NODE_8_length_249075_cov_20.4696, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 243749 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 243688 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 243627 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 243566 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 243505 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 243444 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 243383 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 243322 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 243261 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 243200 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 243139 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 243078 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 243017 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 242956 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 242895 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 242834 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 242773 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //