Array 1 23589-21369 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFJT01000037.1 Klebsiella pneumoniae strain 071I1 CEPHYTEN104_S42_R1.fastq_(paired)_contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23588 27 93.1 32 --........................... CGGAAATTTTGATTAGTTGAATCTGTGCCATT 23529 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 23468 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 23407 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 23346 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 23285 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 23224 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 23163 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 23102 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 23041 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 22980 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 22919 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 22858 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 22797 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 22736 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 22675 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 22614 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 22553 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 22492 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 22431 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 22370 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 22309 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 22248 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 22187 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 22126 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 22065 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 22004 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 21943 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 21882 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 21821 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 21760 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 21699 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 21638 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 21577 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 21516 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 21455 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 21397 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 37 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-515 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFJT01000130.1 Klebsiella pneumoniae strain 071I1 CEPHYTEN104_S42_R1.fastq_(paired)_contig_130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 60 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 121 29 100.0 32 ............................. GACCTGTCATGACGGAAATAGTGGTTATAAAC 182 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 243 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 304 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 365 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 426 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 487 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GGCGCCGGCCTGATCACTATCGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //