Array 1 273919-272431 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPVB01000001.1 Streptococcus agalactiae strain CZ-NI-006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 273918 36 100.0 30 .................................... TCAAGAGCTTTTACATGGTCTGCGACCGCA 273852 36 100.0 30 .................................... AAAAGAATAAGTATATGTTCTCATCTCAGA 273786 36 100.0 30 .................................... GATATGGTGGACAGGTTCAGCAGGTCATGT 273720 36 100.0 30 .................................... AACATTAGCCTTTTCTAACTCTTCAGCTGT 273654 36 100.0 30 .................................... TATGTCTTCTAACAGTTGCTTCTTGTGCTT 273588 36 100.0 30 .................................... CCGTCAAACAAGAGCGACAGCGAAACAAGC 273522 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 273456 36 100.0 30 .................................... AGTTACTTCTGCTTGGGTTTGATAAGGGTC 273390 36 100.0 30 .................................... GAAATGTGGAGTCATTCAGGTTGATGATGG 273324 36 100.0 30 .................................... AAAAAATAAATGACTTTAAAGCACTTGGAG 273258 36 100.0 30 .................................... ACCCTTGTATGTTAAATCCGCAAGATTTTA 273192 36 100.0 30 .................................... TAGTAGCCATTATTATTATGGCTTTTATTT 273126 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 273060 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 272994 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 272928 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 272862 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 272796 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 272730 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 272664 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 272598 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 272532 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 272466 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //