Array 1 1986-2219 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHA01000112.1 Lactobacillus helveticus strain IMAU30005 Scaffold112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1986 36 100.0 30 .................................... ACCAAAGCACAACGGTTAACTATTCGGGTG 2052 36 100.0 30 .................................... TAGTTCTGTGTTGTGGAAGTTTGCCAATTA 2118 36 100.0 30 .................................... TAGTTCTGTGTTGTGGAAGTTTGCCAATTA 2184 36 91.7 0 ..............................C.A..A | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGACCTAGAATGATATGTTGTGGGTGTG # Right flank : ACACAAAATAAATTAGCTATTTACTGAGACTATATGTTCACAGACTTGTGTGATTAAAAAATTGGTAGGCTCTATTTCAGAATGATTATGTAGTAATACGTAATCATTCTTTTGGCTCTTTGTCAAATCCTGTTGATAGAGAGTAAATGAATAGAATCAAGCGGCCATTAAAAGGCTGTTTGGTTCTTTTTCTTTAAACAAGTTTTCCTCTAAACGAATTCTGGTTAAAAGATTGATAAAGTTAGAATAGCCGAAGGCTGTTCGCTCAATTTGTTTGATTTTGCAATTGAAGCCTTCAAGGCAGCCATTGGAGTATGTCAAAGCTGCTCCGTTGAGTACCGCTTTTAGATTATGTTTGAAGGTTAGCAGCGTTTTATGCATTAAAGCTCCAATGGAATCTTTGCTGGCAATTAATGATTCAATTTTCTGAGTATCGCCGTCTTCAATCGCCTTAATAAAGCTCTGCATCAGATTATATGAGTTTTCTAATGTAGTGTTGG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 12570-12358 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHA01000013.1 Lactobacillus helveticus strain IMAU30005 Scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12569 29 96.6 32 ............................C GCCCGTGTACAGACAACCTTCAGCGGTGGTAC 12508 29 100.0 32 ............................. TGAGTATTTTGTTGTTTAGTTTCGTCCATCAA 12447 29 100.0 32 ............................. GTCATAAACTGCGTCAATATCATCATTGTTTT 12386 29 75.9 0 .....................AAT.CAAA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : CCTTATCCAGATGGCTACTTTGATCGTGATGCTTGTCCCGTTTACATTTTAGACTCTGCCGGCAATGAGCTTGGCAAGTCAACAATGTTTGGCGATTTTAAATGGGAAGGATAAATAAAAAACAAGCCTGCTCGCCTCAGGTGTGTAGGCTTTAATTATTCATTTAAAAAGAACATAAGTTTTGATTTATAGGAGTGATTGTATGGCTTATATCAAAAAACGCGGTAAAAAATGGCAAGCACAAGTTTCTTGGTATGATCTTAACAATGAAAGACAATATAAAACTAAAGGCGGATTCTTAACTAAAAGGCAAGCACAAGAATGGGCTAATAAAATGGAGGTAGCAAAGGACGATAATCAGATTGTTGCCAAGGATCCTACTTTTGCAGAAGAATATGAGGATTATACAAATACTTATAAGATACCCGGCAAAGCGACCACTACACAACGAAGATATAAGTACTCTATTAAAGTAGTGAAAAATAATTTTGGAAATATAA # Right flank : AACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATTGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATAAACATTTTTTACTTCCGGCACTTTTTTAACTGCTTGAGTAATGCTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCATATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCGATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTATCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCACG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //