Array 1 9779-11529 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOAO01000007.1 Campylobacter hyointestinalis strain D6099 NODE_11_length_11529_cov_44.2591_ID_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 9779 30 100.0 37 .............................. CTAGTGAAAAAAGCAAGGACGAAACAGAAAGACTAGA 9846 30 100.0 39 .............................. TTTAATCTGCTTTTTTAGGCTATATGATTTATAACAACA 9915 30 100.0 36 .............................. TAATCACCACCCCTGCAAATGTGATACTTGCTACTC 9981 30 100.0 36 .............................. GCAGTGGAAGCGCACTGATAAAAATGGGTATAGATA 10047 30 100.0 36 .............................. TATAGTTGCAAAAATTAGAAAAAATATTTGAAACAC 10113 30 100.0 36 .............................. AATTAGCAGAAATAATAAAAGGATGCTAAATGAATT 10179 30 100.0 38 .............................. TCTGGGCAACTGGCTCGTTTGCTCCTGCCATACTTCCT 10247 30 100.0 34 .............................. GAAATACCGCAGAAGATTTGGTTATGAGTGATTA 10311 30 100.0 40 .............................. CTATTAAAATTAAAAGGCTATTTAAACCATTTTGAGCATC 10381 30 100.0 36 .............................. TTCAAACTTGTCATTGTTTTGGTTAAGGTTATCGTA 10447 30 100.0 34 .............................. TGGTGGGGCTTGATTGAAAATATCAAATGATACA 10511 30 100.0 34 .............................. TTAGATATATTAAGAAATCCGTCTATTACAGACT 10575 30 100.0 35 .............................. TCAGCGTCGTTATACTGCCATAGCAACGCTTGAAG 10640 30 100.0 39 .............................. GAGATTGCCTCCATTTTCGAGGCGTCGCCTGTGTATGTT 10709 30 100.0 35 .............................. GAAAATACTTTTCAGTTTTGGTTTGCGGATAAAAA 10774 30 100.0 37 .............................. TCGGCGGAACAGTGAAAAACGACGGCGTGAGTATGGA 10841 30 100.0 35 .............................. CTGCAAATACCAAAGAATGGCAAGAGCAAACATTC 10906 30 100.0 35 .............................. GAGGGAAAATCTGATTTTAAACCGCTTAGAGTTTA 10971 30 100.0 39 .............................. TTTTGGATTCATAGATCTTTTTAGGGCGTCATCATCATA 11040 30 100.0 35 .............................. TCGAAGCGTTGATTTCGCCTAGTGGCTAGTTCGAC 11105 30 100.0 39 .............................. CCAAAAATGCATAAAGCCCATAAGCTAAACATAATAAAA 11174 30 100.0 34 .............................. TTTTGGCTTATTTGCTTTAATTTATCATATATCC 11238 30 100.0 37 .............................. TAGAACTATCTTCTAATCTTCATGATCCTTTACCTGA 11305 30 100.0 36 .............................. CAATGTAGCGAATTGATATTTTTCTTGCAAAGGCTT 11371 30 100.0 35 .............................. CTTTACCTGTTTCATCTTTTGTTATTTTTGCTAGA 11436 30 100.0 34 .............................. GCTTATAGAGTTTTGCGAAAAGAATATCTTAGGG 11500 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 27 30 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : TCTATCTCTCTTCTTCTCATCTCTCCATCATCATTCTCGTGATCAAATCCTAATACGTGAAGCAGTCCGTGAGTAAATAATAAAGCTATCTCATCTTCTACTTTATGACCTAGCTCTTTTGATTTTGAACTAGCTAAATCACTGTTTATAACAATAGATCCAATAGGGAAATGAGGTACATACTCAAGTGGAAAGCTAAGCACATCTGTAGTTTTATCTATATTTCTCTCTTTTTTATTTATCTCTTGCATTTCATCACTACTAACAAATACAAGCTCAATCTCTGCTTTAGTAAGCTCATCACATATATCATCTAAAATACTAGGGTAATTTGTATCACAAAGTATCAAATTTAGTCCTTGGTGTGAATTAAATCAATCGGCTTTTTTGCAATTATTATTTGCTTATTTTATATAAAATCAAAGATTTTAAAGCACTATGAAAACCGATTAAATTTACTATAAAAATTATGGTAAAACTATACGCAAAATATAGCCCTA # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 8305-10218 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOAO01000025.1 Campylobacter hyointestinalis strain D6099 NODE_12_length_10218_cov_41.8213_ID_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8305 30 96.7 37 ....A......................... CGTTCGCTTGTCGTACCTTGGCGGATTAAACTATAAT 8372 30 100.0 34 .............................. CAATTTACCCTTTAGATCTCCCAATCTACCCTTT 8436 30 100.0 36 .............................. GTCGGTCGTTTTTCGAAGCTGTCCTACTATTTGGGG 8502 30 100.0 33 .............................. GTCCAAGCCTTTTAAAGCTTTCATAGGTCTTTA 8565 30 100.0 37 .............................. CAAACAAAGAATACGAGGTATGCCCACTTTGTGGCGT 8632 30 100.0 36 .............................. CAAATGATGCGAAGTTTTTAGCTCAAGAGTTCACCC 8698 30 100.0 35 .............................. GTTAAATGGTATGATTTAAAAGATGAAGAAATTAG 8763 30 100.0 35 .............................. TCTATCCCTCACGCTTTTTTGTATGTTTGTGATTT 8828 30 100.0 36 .............................. TAGAGTTGTTTCTGCTGTTGCACTTGTATTTTTTAT 8894 30 100.0 33 .............................. TACCCTCAGAAAAATTAAGATGATTTTTCATAA 8957 30 100.0 34 .............................. TCTGAAAATGATATTATTTATCAAACGTTTATTT 9021 30 100.0 36 .............................. CTGGTGTTTCAAACTCAACTGAATATACGGTAGCTG 9087 30 100.0 35 .............................. TTTTTATTTTTTGAACTCTTTGAATGTTCTGCTGA 9152 30 100.0 35 .............................. CCTTTGGATCTTGTGGAGTTCTATTATCAACTAGA 9217 30 100.0 37 .............................. TTGTTTTGGGATTGGGGAAAAACTTTGCGTAATAGTA 9284 30 100.0 34 .............................. TCAAAACTTTAAATGAAATGATAAACAATGAAGA 9348 30 100.0 34 .............................. TTAGATATATTAAGAAATCCGTCTATTACAGACT 9412 30 100.0 34 .............................. AATTTAAAACGGATAAAAATAGCGGACAAATCAC 9476 30 100.0 34 .............................. ATATCAAAGCTAGGCTCTATCTCATGCTCATCGT 9540 30 100.0 36 .............................. TTCGCCTTTTTGAAGTTTGCTTATATCGGCATCAAA 9606 30 100.0 34 .............................. GTGATAGCCACTCCAAGGGCGATAAAAAACCCAG 9670 30 100.0 36 .............................. AAAAAGGAATTAAATCTTTTAGTCCCTCGCCTGTTG 9736 30 100.0 33 .............................. CTCTACCATCTATATCACTAGCTCCAGTGTTTT 9799 30 100.0 35 .............................. GCTACATTAGCTCCGCTAGCCGCGCCTAAGCTACT 9864 30 100.0 35 .............................. CTAAGTAGCATATTTTTAGCCTTTTCATAGTCAAC 9929 30 100.0 36 .............................. CATTCAAGAACCATCAAGAGAGATTATATCCATACA 9995 30 100.0 35 .............................. GAGGGAGCATACAATGAAATGTTTGATGTAGTTCA 10060 30 100.0 35 .............................. CTTTACCTGTTTCATCTTTTGTTATTTTTGCTAGA 10125 30 100.0 34 .............................. GCTTATAGAGTTTTGCGAAAAGAATATCTTAGGG 10189 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 30 30 99.9 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : TGTGAGCTATTAGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGGTAAGCTACAAATCCTAAAAATGTGAATTTTCTATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGTATCAGTTTTACCAGTGTAAGGCTTTGAGTAGCTAAAATCAAAATGACAATAAAATTTTATTAAAGCAAAAACCAAAACCATAATAATAAAACTAAACATTTACAAGCCTTTTTTAAAAAGTATAACATAAAGGATTAAATATGGCAAATCCTACTCTAACCTTTGGAGTTGATTTAAGTGAGTTTAATAGTGCTTTTAATAAAATCAACAAAACAGCCACTACTCTAAGTGATGCCTTAGACAAAAATATCAAAACAGCTACAACTGCGATAAAAAATGCAAATCACAAAAA # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //