Array 1 7654-5374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWP010000002.1 Listeria cossartiae subsp. cossartiae strain FSL L7-0478 NODE_2_length_487419_cov_24.957436, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7653 36 100.0 30 .................................... TGATTTATTCGTTCCTAAGAACCAAAAACC 7587 36 100.0 30 .................................... GTATTCGACCCATCTACTAACGCGTTTACT 7521 36 100.0 30 .................................... TAAAAATCTACGTTTCTTGAACTCAACCAA 7455 36 100.0 30 .................................... AACATAATACGCATGCCGTGCAACAAAGTA 7389 36 100.0 30 .................................... TGGTTTATCCGGCAAAACTATAGGTTCTTT 7323 36 100.0 30 .................................... TTTAGCTTTAGTAGCTTCATTTACAAGTTC 7257 36 100.0 30 .................................... AAACCTGCTGTGGAAATAATGAACGTTAAC 7191 36 100.0 30 .................................... TTGATGCGTTTGAAAACTATATCCGGAGCA 7125 36 100.0 31 .................................... TTGCCAATGTTACAGAAGTGGCAGTGCTTAA 7058 36 100.0 30 .................................... TGTTTCTTTATACATTGCTCGAACTTCATC 6992 36 100.0 30 .................................... ATGGATGAGGGTGAAGCATACTGGTTACTG 6926 36 100.0 30 .................................... GGAAATGGCGCAAATAGCGCGCGATACGGC 6860 36 100.0 30 .................................... TATATTCACTACTCTTTAAATGTTTATTAC 6794 36 100.0 30 .................................... CTTCATCATATTGAACCCAATCCAATTTGT 6728 36 100.0 30 .................................... CTTGACTTGAGTGTAATCATTTTTTATTCC 6662 36 100.0 30 .................................... AAATACAAATCGTTACGGGATATATGCGGA 6596 36 100.0 30 .................................... TGAAAAAGCGAAAGAATGTAACATGTCTGT 6530 36 100.0 30 .................................... CGCGGAGGCAGGTGTTTTGTAATGATTAAC 6464 36 100.0 30 .................................... TCATTATTATTTTTTGAAAACACCTTTATA 6398 36 100.0 30 .................................... ATCGAGAATGTAAGCAATATCGAAACGACG 6332 36 100.0 30 .................................... CAATTCACCAGCTCTTCCTCTCCAGCAGTC 6266 36 100.0 30 .................................... AAATTATGCGCTCGTTCTCCTTAACCAATC 6200 36 100.0 30 .................................... ACAAAATAAAACATAAAGGATGATGAAAAA 6134 36 100.0 30 .................................... TGACGTTACCTCTCGAATTAGATTTGACAC 6068 36 100.0 30 .................................... AATCTTTAGTTGATAACTCCACAGAAAACT 6002 36 100.0 30 .................................... TAAGGCCTGCGATCTACCTGTGGGTAATAT 5936 36 100.0 30 .................................... CCCCAATAATATGAGGTGAGTTCAAGAAGG 5870 36 100.0 30 .................................... GGCGGAGGCAGGTGTTTTGTAATGATAAAT 5804 36 100.0 30 .................................... TTCATAAGCATGTTCCAGCTCTGAAAATCC 5738 36 100.0 30 .................................... AGAAAAAGCTAGAACAAAACCAGCAGCAAT 5672 36 100.0 30 .................................... TTTTGTAGATGCTTGGCGAGAGGCCAATCC 5606 36 100.0 30 .................................... TATGGCGACATCGTAGCAGACGGATATCAG 5540 36 97.2 30 ..................................C. TGAACAAACTCGAATTAGTTGTAAATAACT 5474 36 97.2 29 ..................................C. ATCTGATGAAGATAACTACGCTGAAAAAA 5409 36 77.8 0 ......A......A......A..G....G...T.TA | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGTTAACTGCGACAATTAGCGAGTTAATAGGTTACGAGCTATTGGAGCATGAACTAGATTTAGAAGAAGATGAAATCACGGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGTGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATAAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTATATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAACAGACGGCTTTTCGCAGGTTATTCTGGATTCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGATCGGACGTTCTTTGAAAATAAAATATAGTTTAATTACCTTATTAAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTCGGAGGATAGAAAAATTCTACGAG # Right flank : AGAAATAAAATCTTTCACATCAAAAGTTCTCGGTAGCTTTTAACAAGGACTATAAAAATTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTGGCTTCCCCTTTCTTCTATATAAACGATCTAGATTTCTTAATCTTAAATTTCGAGGCAAACATTGACTGTGATACAAATGATTTATTCTCCTATTCAATACACTTCAATCAAGCTTGCGAATTTCAAGTTGGTATAAGTGAAGGGGAATTACCATTAAAAGGCGAAGTGCAAAATAACAAATATGAATCTAAAAGTTTGAAAATATTATATGATTACATTATAAAAGCGAGTAAAGAAAGCGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACAAATAAAACAGAACTATCCATAGAGAATTTAACTCTTGAAAGCTTGATTTTAAGCGATAGAGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 252815-253497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWP010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-0478 NODE_1_length_1409620_cov_17.652850, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 252815 29 100.0 36 ............................. TGGTTCTAATATAAGAGGTTGTCCCGCCCATTTACC 252880 29 100.0 37 ............................. TTTGAAATCAAAACTAGGTCGAGTAGCGTGCAAACAG 252946 29 100.0 36 ............................. ATTGACCGAACTTGAAAAATTGACTCAAGATTATGC 253011 29 100.0 36 ............................. GAAGAAACAACTAGAAAACACAGCTAAGAGCATCGC 253076 29 100.0 35 ............................. AAACGCAAAAAATATTATAGTAAAAATAAATCATT 253140 29 100.0 36 ............................. GAGTATTGTTCGCTCAGTTCGTTGAATTGTTTTTCA 253205 29 100.0 39 ............................. AACAAAGATACGCATTTTGTTCGATGCAATGTAAGTGCG 253273 29 100.0 35 ............................. GAAGATCAAGTAGCATTTATTCATGATGCGAAATC 253337 29 96.6 37 ..............A.............. ACTAATTTCATCAAATCAGATAATATTTTTATCAAAA 253403 29 96.6 37 ..............A.............. CAACGAATTCCGTTTTTTTAGAATGTTGCTGCCGCCA 253469 29 86.2 0 .......T.......CA......A..... | ========== ====== ====== ====== ============================= ======================================= ================== 11 29 98.1 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTACTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGACCGTTTACAAAGCTCCAATATCAAAGAAGTCATCACATCTGACTCTATCGATCTTCCAGAAGACAAGCAATTTGACAAACTAACAACCATTTCTATCGGCCGTATTTTAGGACGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGTAACTCTTAGGGTTGCTGTTTTTTTGTGTTTAGTTGTCTGTCGACCTTTGGTAGCGTGAAAAAGGCTGGGGATCGACAGAAAGGTGAGAGTGATTGGCGTGGAAGGAGTTTGGTGGTTTTTGCTTTTAAAAATCATGTAGAGAAGGGTGATTTTTCGTTGGCTTTTAGTTGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTTCAGATACAACTCCATTCTCGTCTATCAAGAATAAAAAGAGTGACTGCGATTTCAGCAGTCACTCTTCTTTTCAATCATTAAACTCTTTCAAAACGTCCTCTTTAATTTCAGTATAATTTTTTACTTCCTCTTTCTCTTCAGAAATAAAATTATATACTTCCACTTCTCCTAAATTTTCAAAATCCGAAAGAGTAGCTTCCGTTTCTTTCAAATCTTCATTAAATTTTCCGTAGCCCATGCTAATTATCGAACTTAGTTTTTCACTATCATGTCCACCGCGCAAAAATAACGTATACTCTTGCTCTTTTTCAAGAGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACATCAATTTTGTCGCCTTTTTTGAAGGTGCCTTTATAAGTTTCTAAAACTTCTACTTCACTTATAGTGCTACTATACTCCATTTTTTCTTTATCATAATCGCCAATTTTCTTGTTTTTCAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGATACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 270261-271554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWP010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-0478 NODE_1_length_1409620_cov_17.652850, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 270261 29 100.0 34 ............................. CGAACTTATATAGACCGTCACCTTCACCAATAAT 270324 29 100.0 35 ............................. ATCGATCTCATAGATTTTCTAGATGTAAACACTCG 270388 29 100.0 37 ............................. GACAGTTTGTGTTGTCTTACTATCAACATATGTCTTA 270454 29 100.0 36 ............................. GTCTTTGGTATTTCGTTAATTCCAAGTGGTTTTTCA 270519 29 100.0 37 ............................. TCATCAGATGATACGAGTGACTTATGATGAGTAATAA 270585 29 100.0 37 ............................. GTTGGAAGGTATTGACAATCCGAATCAAGTGAAAATA 270651 29 100.0 35 ............................. CAAGGATTTCAGTTAATAAAGCGAAAGTAGAATCC 270715 29 100.0 38 ............................. CAAGTTCTTTTTCATAAAAATCTATTGCCATGCTTTCC 270782 29 100.0 37 ............................. GTTTATTTGGATCATGAAAGAAACATAGTTCAATTAC 270848 29 96.6 35 ..............G.............. AACACCTGCAAAGGATTTACAGAACCATCTTTTCC 270912 29 100.0 37 ............................. CCGATTAGCAGCATTGCAGCAACGCTAATCCCTACCA 270978 29 100.0 35 ............................. ATCCCCTAGTGTTTAGCACGAATCAATCACCTAGG 271042 29 100.0 36 ............................. TTTTTTGATAAAAATATTATCTGATTTGATGAAATT 271107 29 100.0 36 ............................. TTGTCTGATTCCTCTAAGCCTAGGTCTTCGATATTT 271172 29 100.0 35 ............................. TCGCTATACTTGTGTTAAGCGTTAAGGCTGTTGCG 271236 29 100.0 34 ............................. TTAGTATTTTTATGCCCGCACCCAAGAGCATTGG 271299 29 100.0 35 ............................. AGGTTTCCGCGATCTCTTCCATCGAAAGGTAATCA 271363 29 100.0 36 ............................. TTTTCAGCGAATTTTGTTACTGTTTCTGCTAATGCT 271428 29 100.0 68 ............................. CATGCTTCATCATTGCTTGTGTAAATGTAAATCGACCAGGTACAGCAGCTTATCAGTGACCGAACCGG 271525 29 86.2 0 ...............C......CA....C | C [271547] ========== ====== ====== ====== ============================= ==================================================================== ================== 20 29 99.1 38 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACCCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATTTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGCTTTTTAGCCGAAATCTGAAGGGATAAGCTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATTCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATAACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGTCCCAGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAATCCATTATAAAGTCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCACAAGTAGTTCCTTCTCTACGCCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //