Array 1 839-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBPM010000012.1 Streptomyces sp. PKU-MA01144 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 838 29 100.0 32 ............................. CGGGCGAGTCCGTCGACGTCATCCGCGGCCGG 777 29 100.0 32 ............................. TCCTCGATCGCCCGCTTCGTCAGGATCGACGG 716 29 100.0 32 ............................. ACCTAGGTGCGCACAGGACCAAACAGGGATCT 655 29 100.0 32 ............................. GGCCTGGACGGCGCCCGCGCGTGGGCGTGGCC 594 29 100.0 32 ............................. ACCCGCTTGTCCACCTGCCCGACCCCGGGCAG 533 29 100.0 32 ............................. TTCGAGGGCCTCGCGACCGTCTCGGGCGTCCA 472 29 100.0 32 ............................. CGTGTGGCTGACGTGCTGGCCGAGTGGCAGGA 411 29 100.0 32 ............................. CGTCGGCGTCCGGGTTATGGGCCTCAAGGACC 350 29 100.0 32 ............................. GACTGGCGTGGACTGCAGGTCGGCCTCGACGT 289 29 100.0 32 ............................. GACTGCTGCAGCGACATGGCAGTGAGGTGGCC 228 29 100.0 32 ............................. AATTGGAGTTATTGTCGGCTACCGACAAGTAA 167 29 100.0 32 ............................. ACGGGCGGGACCCCGGGGAGTTTGCGCGTTTC 106 29 96.6 32 ..................A.......... GCTTCCTCCGCGCGGCGCAGGACGCGGCCCGT 45 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGACAGGCGAACGACGGAGTGGCCTTGCCGATGTCGTGCACACCGGCGAGCCATACGGCGAGGGCGCGAGCGTCCGAATCACCACGCGGCAATGCCTCGGCAATCAGCCCCCTCACACCCGCAGGCAGCCACCGGTCCCATAACAGGCGAGCTACTTCGGCGCTGTCCTCCATGTGCCGCCACAGCGGCAGCCAACCGTCGGTGTCACGGTCATGCTTGGCCCACACCGACCGTGCCGGCCCACCGAGCCGGGACAACATGCCGAAACGGGTACGCTCCCCGCTGCTCATGCAGAGATTGATACACGCGCGGCGAGGCTCCGCGCACGGAAATGGGTAAACGCAAGCGACCAGGTGATATCGACAGGTAGACCGGTCATCTGAGGCCCGATCCGCCGGGCGCACCGAATCAGAGGATTACCCTGGATGACCCATTCGCCCGACTCTGCAGAAGTAGGTGAAACGGGGCCTCCGTCGCGGTGAACTGCCAGGTCAACCAGT # Right flank : CCGTCGGCGTCCGGGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11153-13072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBPM010000012.1 Streptomyces sp. PKU-MA01144 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11153 29 100.0 32 ............................. GAAACGCATGACGGTTCTCCTTGGGTTGGTGG 11214 29 100.0 32 ............................. CGCACCACCGTCTCCCCGAACGGATACCTGGG 11275 29 100.0 32 ............................. GTGGGAGTGCCCCCGTCCGGGGAAGTCCGGCG 11336 29 100.0 32 ............................. CAGGCCGGGCGGCCGTGCTTCGTCGGGTCCCA 11397 29 100.0 32 ............................. CCCGGCATCCCGAACTGAGGAGCACTCCCATG 11458 29 100.0 32 ............................. TTTCCCTCGCGATGGTCGGGGACGAGGGCGAA 11519 29 100.0 32 ............................. GGGGGGCTGGGCGACGGCCGCTCGGATGGCGT 11580 29 100.0 32 ............................. GCGACAGCGAGCGCGATGACGGCCTGGACGAA 11641 29 100.0 32 ............................. GACCTCTTCGAGCGAGGCATCGCAGTCAAGGT 11702 29 100.0 32 ............................. TGCAAGGGCGCGCCGCCGCAGGGCTTCACCTG 11763 29 100.0 32 ............................. CAGCGGTCCTCGATGTACCCGGGCATGCACCA 11824 29 100.0 32 ............................. GGTTTCCTGGCTGACCTGTGGATCGAGATGAC 11885 29 100.0 32 ............................. GAGCCGCTCCCCGAGCGTGGCCACTACGACAC 11946 29 100.0 32 ............................. TAGTGCAACTAGTGCAACCGGCCGCTACGATC 12007 29 100.0 32 ............................. GGCAGCGGGGTGAGCGCCTGGCGGATGCTCTC 12068 29 100.0 32 ............................. CTCGAGGACCAGCTCGCCAAGCTCGCCTCGCG 12129 29 100.0 32 ............................. CCCGCCGGCACCTGGGGATGGGTCGAGAATCG 12190 29 100.0 32 ............................. TAGCGGTCCTCGATGTACCCGGGCATGCACCA 12251 29 100.0 32 ............................. GGTTTCCTGGCTGACCTGTGGATCGAGATGAC 12312 29 100.0 32 ............................. GAGCCGCTCCCCGAGCGTGGCCACTACGACAC 12373 29 100.0 32 ............................. TAGCCCAGGGCCCAGCTGGCGAGGTAGGAGAC 12434 29 100.0 32 ............................. GTCATCACGGACGGCCGCAAAGCCGCCCTGGA 12495 29 100.0 32 ............................. GCGGAGTGGTCGCAGCTTGTCGCGGAGAGGTT 12556 29 100.0 32 ............................. TCGGCGAACGTGGCCTACGCCGCGGACGCGCC 12617 29 100.0 32 ............................. TACGGCAAGATCGCGTGGCGCTACGGCTCCAA 12678 29 100.0 32 ............................. GCCTGGTGGGTGAGGGGCATGAGCTTGGCCCA 12739 29 100.0 32 ............................. ACGCTGTCCGGCACCGGTGGTGCCAGCACGCG 12800 29 100.0 32 ............................. CACTCCCAGAGCCGGGAGTGGTCGGTCGACTC 12861 29 96.6 32 ...........G................. GACATGGCGAAATCGACCGTGTCGAGTGCGGA 12922 29 100.0 32 ............................. AGCACCCGCAAGATCACGGTCGTGACCGGACT 12983 29 93.1 32 ...........G...............G. GAGGTCGCCCTGGTCGCGGGCGGCGACGATGT 13044 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGCGTCAACTACGGTGGAGGGGACGACTACGGGGACTCGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCAGCCGGTCTACGTGGCTTTCTGACGCGCTGGCTACTCGAGATCTCCGCGGGCGTGTTCGTGGGCAACCCCTCGGCCAGAATCCGCGACCTGCTCTGGGAAGAAGTCCAGCAGTACGCGGGCCAAGGCCGGGCCCTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCACGTTCCGCACCCACGACCACGCCTGGCATCCGACCGACATCGAAGGCGTCACCCTGATCCGCCGTCCCGATCCGGCCACACCACCCTCCGCCCCGGCTCCTCGCAACGAACCTCCCGCAGGCTGGAGCAGGGCTGCCAAGCGTCGACGCTTCGGCAGGAGCTGACGCCGCACTATGGTCCATATGTCAGATTCACCGGAATCAGTTAAAGTCCTCGGAAACCGTCCGCGCCACCGCTAAACCCCCAGCTCAGCCAGT # Right flank : CGAGCCGCGCCGGCTCCACACCTGCGTGATTGGTGGGATCCCCGTCCCCCGGAGGGCCCGTCTCAGCACTCGATGATGTGACCGCCAGCCCGCCCCGAGCCGTCCCCTTGTACTTCACCGACATGCGGACGGCTGTTGATCATGGGTTTGGCGTGCCGATTTGGCATGAGCAGGCTCGCCTTGAGTCACAGGGACTTCTTGCCGCGGGCTGACTTCAAGGTATCCGAAGTTGCCCGACCGGGTGATCAAGCACGAGAAGCTGTTCGACGCCCGAGGCTAAAGATCAAGTTGGTGATCTGGTCCGGAGATTCGTGGACAGTAGCGGCAGATGCTGTCGATGACTGTGCTCAGCGGCAACGAGCTGAACGGCGCAGCCGGTCCGGTATCGCGCTGCGTCAGACCTTGATTACGCGGACGCCAGGGCCGCACACTGTGCGGTTCCGACCCTCTGAGACCCGGTCGGTCGGCCAGGTCTGGTTCATGACCATGTGAGGGTCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 180630-179868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBPM010000011.1 Streptomyces sp. PKU-MA01144 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180629 29 100.0 32 ............................. ACCCGCTTGTCCACCTGCCCGACCCCGGGCAG 180568 29 100.0 32 ............................. TTCGAGGGCCTCGCGACCGTCTCGGGCGTCCA 180507 29 100.0 32 ............................. CGTGTGGCTGACGTGCTGGCCGAGTGGCAGGA 180446 29 100.0 32 ............................. CGTCGGCGTCCGGGTTATGGGCCTCAAGGACC 180385 29 100.0 32 ............................. GACTGGCGTGGACTGCAGGTCGGCCTCGACGT 180324 29 100.0 32 ............................. GACTGCTGCAGCGACATGGCAGTGAGGTGGCC 180263 29 100.0 32 ............................. AATTGGAGTTATTGTCGGCTACCGACAAGTAA 180202 29 100.0 32 ............................. ACGGGCGGGACCCCGGGGAGTTTGCGCGTTTC 180141 29 96.6 32 ..................A.......... GCTTCCTCCGCGCGGCGCAGGACGCGGCCCGG 180080 29 100.0 32 ............................. GTGCTCGCCGCCCTCCCGGGTGTGCCGTGGCT 180019 29 100.0 32 ............................. GCTGCACAGGGTCCTACTACAGCTCCGGAGCT 179958 29 96.6 32 .........................C... CACCGCGACACCGGGGATGCCGCCGGACTCGG 179897 29 75.9 0 ..A................CAC...CT.G | C [179873] ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGGTCCCGGCCTGGACGGCGCCCGCGCGTGGGCGTGGC # Right flank : CCCGGGCCATCGACGCGCCCCGCGCCCTGCGCGGGGCGCCCCGGTTCAGCCCTGGTTGAGTGCGGTCCAGAACTCGTCGAAGGTCAGCAGGCCGTCGCCGTTGGCGTCCTTGGACTTGATGACGGCCTCCGCGACCGTCTCGGTCACCTGGAAGTCCCCCAGTTGCGCCATGGCGCTCTTGTACTCGGCGGCCGAGATCAGCCCGTCGCCGTTCAGGTCGAATCGATCGAAGGCCTTGCGTGCCGACTCGATGTCCGCCACAGGTCCACCCCTTCTCGGTGCATTACTGACGCGGGCCAGGTTATCGGCGGGGCGGCGGTCCCGGCGCCGGGGGCGTGCGGGGAGGACGGGTCGTCCGGGAAGGACGGGCGCCGCCGGGGAGGACGGGGCAGTCGGGGAGGATGGAGGGATGAGCGACGCGGTGGCACGGATACTGGAGGCGGCCGCACGGGACGAGTTCCCGCCGCCGGACGGCGGTACGACGGTGGTGCCGCAGCCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //