Array 1 230771-235157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSGR010000001.1 Eikenella sp. S3360 NODE_1_length_414051_cov_198.642992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 230771 32 100.0 33 ................................ AAAACAAGAAAAAGAAAAATCACTCCCAACATG 230836 32 100.0 33 ................................ TATGAGCTTGCCGCGCTGGTTGGTCACGAAGGT 230901 32 100.0 34 ................................ ACGGTAACCGGCGACAAAACCTACTTCAACGGGG 230967 32 100.0 35 ................................ CCAGCCGCAGCCCAATCAGCTGCTGCTGGAAAAAG 231034 32 100.0 34 ................................ CGGGCAGGATTGGCAGCTGGCTAGGCTGCTGAAC 231100 32 100.0 34 ................................ GCCGTTTGAAATGGGCTATATCGACCGGGGAAGC 231166 32 100.0 35 ................................ TTGCCCGTCCTTTGGTCATGCACCATCTCGCGGTG 231233 32 100.0 35 ................................ TTAAGTACAATAGTACAAAAGGAAATCAAGATGAA 231300 32 100.0 33 ................................ TATTCGGATGCCTCAATATTCAAGGGCGTCTAA 231365 32 100.0 35 ................................ CAGCACGCTGCGGCTGACAACAGGGTAGCCTGCGG 231432 32 100.0 33 ................................ TATCGTCAGTATTGATACTGGACGGAGCCAAAC 231497 32 100.0 33 ................................ GGCACGGGTAGGCGCTTGGCTGGTATTGGCGGC 231562 32 100.0 34 ................................ GAGCCCGGAAGGGAAATGTCGGAGGAATACATCA 231628 32 100.0 33 ................................ ATGATTTGCCTCTAGTTCCGCCGCGCTGGATGT 231693 32 100.0 34 ................................ TTACGTGCCCAGTTTTCAGATACATCAATCATCC 231759 32 100.0 34 ................................ CGGCTCATTTTGGGCAGGAAGACATGGGGGTAGT 231825 32 96.9 33 G............................... TGCTCGTCCGTGCGCTTTTTCTCGCGGATTTCC 231890 32 100.0 34 ................................ TCTGCAACGATGGAAGATTTGGGCTGGACGGGCA 231956 32 100.0 33 ................................ ATTTACTGGCCGGGATATTGAAGCGCAAGGGTA 232021 32 100.0 35 ................................ GTCATCATCCGCCAAAACGGCGACGAGGCTACCTT 232088 32 100.0 33 ................................ CGCGATGCCGACGGGCAGGTGCTCGGCGCGGTG 232153 32 100.0 33 ................................ TTGTAACCAATCTGCCTGGCAATCAGACGATTC 232218 32 100.0 33 ................................ CACCGCCATTATCGGCATGGTTTGCACCGCCGA 232283 32 96.9 33 C............................... GTAACGTTTAGCGGTTTCTTCTGCCTTGCGGGC 232348 32 100.0 32 ................................ ATCTATCATTTCTACTAAATAATTAAATCTCT 232412 32 100.0 34 ................................ ATGGTGTGTAGTCCTTAAATGGTGGTGGCTTTTA 232478 32 100.0 34 ................................ CATCCAGCGGCGGTTGATGCGGATGCGCACGTCG 232544 32 100.0 34 ................................ TCCATGCGTGTAAAAATATACTGCATATACTGCA 232610 32 100.0 34 ................................ AATCCGCGACCCGCGCAAATCGGATGAGGTGGAA 232676 32 100.0 34 ................................ TCGATCAATACGTTGTCGATTCCGTAGGCGGCCA 232742 32 100.0 35 ................................ CATGCGTTCTGCATCAACAGCGGCACGGAACACGC 232809 32 100.0 34 ................................ ACTCACAAGAATCTTTTGCTGCTGCTAGTGCCTC 232875 32 100.0 34 ................................ GCCGGAAGAAGCGGCCAAGCGGCGCCGCGATTTG 232941 32 100.0 33 ................................ TAATCGGTTTTGCCGTGGTTATCCCCGCCATTA 233006 32 100.0 35 ................................ CGGCCAGGTTGACGAAGAACCGGAACAAGTAGGGC 233073 32 100.0 35 ................................ TTTGCATTGGCGGCGGGGTGAACCCCTCCAACGAA 233140 32 100.0 35 ................................ AACGTGACCCATACTACGTTCAATCCGGAAAACAA 233207 32 100.0 34 ................................ CACGGCGTACCACAGCTGATGCAAGGCTTGCCCC 233273 32 100.0 34 ................................ TTATGCGCGCTTAAAAATATGTGGAACATTTGGA 233339 32 100.0 33 ................................ AAAATCGCCAAATGAGAGGATCTGGCGGCGGTT 233404 32 100.0 34 ................................ GCGTTGTGGTAGGCGTCCCAAACGGATTCAACGC 233470 32 100.0 35 ................................ TTTGCTTGTTAGATCACGTTACACGTATTGTTCGT 233537 32 100.0 35 ................................ CGCCAAGTCATTGCGCTGGTTATCGGCTATTTCTG 233604 32 100.0 35 ................................ TTATTTCCTAACCTTTGAATATATTATAGGATAAC 233671 32 100.0 34 ................................ ACGCTTATCCATGCGGATTGCGCGGCGCGGGCTT 233737 32 100.0 35 ................................ ACCGCGCTGGCGGCCTTGAACATCGACTCCGACCA 233804 32 100.0 34 ................................ AAACAGGGCTACCGCGAGCAGGACGGGCGCATGA 233870 32 100.0 34 ................................ AATCTCAAAGGTAAACAAGCATGATATCGCTGAT 233936 32 100.0 33 ................................ TGCCCCTGTTGCCCGGGGCGCGGCATGGTTGAT 234001 32 100.0 34 ................................ GCTGTCGTTCAAGCCCATCTCGCGCAAGCCCGCC 234067 32 100.0 36 ................................ CCTTTGTCATCCTTATAATCTTTAGGCAGATCACAG 234135 32 100.0 34 ................................ TTTTACGCCGGTTGGTACGGCGGCATAAGCTTGG 234201 32 100.0 34 ................................ AGGCTACCTGAAAAAGCGAGGCAGATATGCAAAA 234267 32 100.0 36 ................................ ATGCCAAGATTGACCAATTCCGGCAGCGCCTCGGAG 234335 32 100.0 33 ................................ GCCGATCAGGCTTCTCAAATGAACGTCAATCAA 234400 32 100.0 34 ................................ ACCCACCGTCAGTGGGTAGTGGTGCAGCACATCG 234466 32 100.0 34 ................................ AGCCGCGACCTGCACTTATCCGGCACCGGCTCGA 234532 32 100.0 35 ................................ ATCTTCATCCACAATAAATCCACAATCCCTTTGAA 234599 32 100.0 33 ................................ AATGCCGCTGCACAGGCTGCCGTAGCGCATTTC 234664 32 100.0 35 ................................ CATCAGACGGCATGCCCAGATGTGGCGGAACAGGG 234731 32 100.0 35 ................................ TATACCGCATGGAGCAGGTCGGCAGTGTGGAAAGC 234798 32 100.0 33 ................................ AGCCCGCAGGTGGACGAAACGCATGACAGCCTG 234863 32 100.0 34 ................................ GACTTGACGGGTCAGCGCTTTCAGTTGCCGTTCG 234929 32 96.9 34 G............................... GGGCTAAAGCGCCAGCTTTCAGGCAGCCCCAAAG 234995 32 100.0 34 ................................ TGCGGCGGGTACGCGGGCGGTACGTCTGCCCGGG 235061 32 100.0 34 ................................ GATATGAAACCATCATGGATCAGCTATCACAAAT 235127 31 78.1 0 C....T.........-A.T...A..C...... | ========== ====== ====== ====== ================================ ==================================== ================== 67 32 99.5 34 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AAAAATAGGAATGCAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCCGAAGGGCAGGCCAGGCTCAGGCGCGTGGCGAAACTCTGCCAAGACTACGGCGTACGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTGATTTTAAAAGACAAACTGTTGAAAACCTACCGGCCCGAAACCGATAGCCTGCGCTTTTACCACTTGGGTAGCAAATGGCGGCGAAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATATATTCAAGGATACATTGATTGTATGAATCGCTGACCTATGGTTCTCATGAAAACACGATGGGGTTGGCGAATTCGGATTGTTCTTTAACAATCAGGATGTTGGAAACGCGGGTATAACGGATTCGGCTGTGTTATACTCCCGTTTCCGCTTCTTTCGGAAGGTTGGCGAAAATGAGGCTGCAAAGCCAAGTTGCGCAAGGCTTTCGGAAGGGGCA # Right flank : CATTTAATGTTGCTACCGTTTATGATTTCATACTAGGGCAAGACGGTGTGCATCACCCGACTTTGAGCCACATGGTGGAAAGCACTGACCAGGGGGCGAGAAACCTGGTGAACGCGCTGGTGCAGGCTGCGCCGAAGATTGCCCAGGCACGCGACAACATCCGCGCCGGCGCAATGCACGATGCGGACATTGCCGAAGAGGTGGTGCAGGCGGCGGAGAAGCTGAACCAAATCCGTGAACAGGGCGACAGCGTGGCCGACTACCTGGCACAGCAGGGCTTGTTTGGCGAAGACATGAACGCGGTATCGCGCGAGCTGCTGGCCTTCTTTGAGGAACACAAACGCAGCGGCAAGGCTATTGCCACCCTGTTGCGCAACTATTACGATGCCTTGGCGGCGCAGGGCAACCCGAACCAGCAGGATGTGTTCGGCGAGCAGGCCGCACCCGACAAACAGCAACTTTTGGAGCAAACGATAAATGACTACGAACAAGAACACGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 23833-23668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSGR010000005.1 Eikenella sp. S3360 NODE_5_length_253890_cov_165.948624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 23832 32 84.4 35 .......AT...AAT................. GCGGCGCGGTGTATGAATGCGATAAAGTAGCGTAT 23765 32 100.0 34 ................................ TTCGGGAGCGATGTGGTTGGCGGCAGCGACGGCG 23699 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 94.8 35 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CGGCCGCGCCGTCCTCTATGCCGGCCGACTGTTTGCCGTGCCCAATGCGTGGGCAAACGGCCAACCCTTTGCCCAACCCGCCTGGCAGCCCGCCCTACACGGGCTACCTGAAAACCTGATCCGCCCCGATAGCGGCATCTGGCGCACCCCCGAGCCGGGCGACACCCTGCCGCTGCCGCACGGCCGCAAGAAAGTCGGCCGCCTGCTGCAAGAGAAAAAAGTGCCGCCCTTTATGCGCGCGCTGTGGCCGCTGTGGGCAAGCGAGCAGCATGGCTGCCTCGCCGCCGCCAACCTGCAAACGCATTGCAAACTCTCCGTACCAAACGGCTGGCAGGCGCATGCCGAGGAGCTGGAACCCTTTATTTTGACCGGCTCGGCAAGCAGGGGCGAAGGAGAAAAGGCTACCTGAAAAAGTTCGGGCTTCGGCGGAATGGAGGACTGGATTTTTTCAGGTAGCCTGTATGGGGTGTGGGTGGTGGAGTATAGTTCTGTTGGCCGTT # Right flank : CAACCATACACCCCCCCAACAGGCTACCTAGAAAACATCTTGCCTTCGCCCGCCACCGCCCAACCAAACCCCACCACCATTTTCAGGTAGCCTTCCCCCCGCACAAACCCGCCGCAGCCTTTCCCCGCTGCGCTATAATACCCGCCCCGTCCACCACACACAGGCCGCTCGCCATGCTCCCCTTCCCCCCGATTGCCCGCCCGCTCAAATTCTACGCCGTGGTGCCCGATGCCAATTGGGTGGCGCGCATGGTGGCCGCCGGTGCAAACACCGTGCAGCTGCGCAGCAAAACCCTCAGCGGCGAAACCCTGCGCCAAGAAGTACGCCGCGCTGTGGCCGCCGCACGCGGTTCAGCCAGCCAGCTTTTCATCAACGACCATTGGCGGCTCGCGCTGGAAGAAGGCGCCTACGGCGTGCACCTCGGGCAGGAAGACATGGATAGTGCCGACTTCCCCGCCCTCGCCGCCGCCGGCATCCGCCTCGGCCTGAGCACCCACGAC # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //