Array 1 86842-85221 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQDC01000005.1 Neisseria lactamica strain M37167 M37167_CHA4079A16_cleaned_ctg_2324, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 86841 32 100.0 34 ................................ TTTCAATGCCGTCCCTTGATGCGAATAGCAGGTA 86775 32 100.0 33 ................................ TTACCTGCCTTACGCCGTTATAAATCGGCTTGC 86710 32 100.0 34 ................................ TGTAACACTCAATCAAGAACATCAGACAGCAACA 86644 32 100.0 37 ................................ ACATAACCACCAAGACCAGCACCGCCGAGCGTATCGG 86575 32 100.0 35 ................................ TCAGACTATGGGGCAAGATATTGCAAAAGGAAACT 86508 32 100.0 34 ................................ CCGAAGTTGCATTGCAACTAGCCTATATCGCAGG 86442 32 100.0 34 ................................ ATCAAATTCCCCCTATTTGAAAAAATAAACCAAT 86376 32 100.0 34 ................................ ACAATAGGACAAAACGTATCATTATGCGAACTAG 86310 32 100.0 34 ................................ ATGAGTTTTTAGGTTTATCAAAAACAGGGACAAC 86244 32 100.0 35 ................................ CTACCGTTTTAAATGCCCATATGAGAACGAATAAA 86177 32 100.0 34 ................................ CGCAAAGGGAATATCGATATAAAGTTTAGTAGAA 86111 32 100.0 35 ................................ TGTGCGATGCGGCGCGGTACGAAGTATTTGCAATC 86044 32 100.0 34 ................................ TTCTGCAACGGCGCAGCCTTTACCCGTCATCTCT 85978 32 100.0 34 ................................ TTTATACGGATTAAAGGGCATTCCGTTATCGACG 85912 32 100.0 34 ................................ TCCCCTTCGGGTATATCTTCATACAAGACTATAT 85846 32 100.0 34 ................................ TGCTTTAGGTGTCGTGGTTTCTGTCGTTAATCGG 85780 32 100.0 35 ................................ CTCTTTATCGCCCGTCAAATCATTCCACGCCATAC 85713 32 100.0 34 ................................ TTTTAAGCCGATGTGTTTTCTGGCTTCGGCAAGC 85647 32 100.0 34 ................................ CCTCTTAGAAGTAAGGACGGTGAAATAAATCATA 85581 32 100.0 33 ................................ CGCCAAGCCGCCCAAATAACCGCGCAAAACCTT 85516 32 100.0 35 ................................ CGCCGTAAATATTGGGTCGGCAGCTTGAGGGTAGC 85449 32 100.0 34 ................................ TCTACATCTTCGCACACATCGATTCGGGTAACCT 85383 32 100.0 34 ................................ CCTATTGATTGGGTGCGCCTTGAGCTCCAGTGCC 85317 32 100.0 33 ................................ AGCGCATTATTCCCCGCCAGCGCGCAAAAAAAC 85252 32 96.9 0 ....................A........... | ========== ====== ====== ====== ================================ ===================================== ================== 25 32 99.9 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGAGGCAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCACGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCAAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTCAAAAAACGGCTTGATATTATCTGCATATATTAATATAATAATAATGATTATTAATCAAACAGGGAAAAAGTAGGGATGTGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGTGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAATCAACACCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCTCCTGCCAAACCCTCTATAGAAACCACGCCGGTCAACCGGCCCGCCGTCGGTGCGGCAATGCGGCTGCCAAGGCGGAATACTGCTTCCTATAAACAAGACGGTACGGAAATTCCCGACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //