Array 1 351996-351416 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAMV01000011.1 Streptococcus gallolyticus subsp. gallolyticus strain NTS31301958 Cont012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 351995 36 100.0 30 .................................... GGTGTTCTTGTACCATCAACGCGTTCAATC 351929 36 100.0 30 .................................... ATATCCATTTCTTTACCGTTTAAACAAGCA 351863 36 100.0 30 .................................... AATAGGAAACTCAATGAATAAATTAACTTA 351797 36 100.0 30 .................................... GTTGAAAGTGAGGGTGTATCACCAGCTGTA 351731 36 100.0 30 .................................... TTGAGCTACGCCGTAACGACAAACGTAACG 351665 36 100.0 30 .................................... AAACAACGTTAGTGTTAAAGCTTTTATTCA 351599 36 100.0 30 .................................... TGCGTTGTCAAACGTTAGAACAATTACTAA 351533 36 100.0 46 .................................... CGAATGGTTCCAAAACCTGCCATTAAAATAACACCGCTAAGAAGCA 351451 36 97.2 0 ..............T..................... | ========== ====== ====== ====== ==================================== ============================================== ================== 9 36 99.7 32 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATCACTGGCGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGTGCAACATTTAACATCGTTCACGGTTCAGACTCACCAGAATCAGTAGAACGTGAAATCGCCCTCTGGTTTGGGGAATAAATAAAAGGAACTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGTGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : TCTAACATTAATCATTGTCATTCGAGTTGAGTTTTAGCGCTGTGCTGTTTATTTTAGCATCTTATGATGCTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACAGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTTCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 352940-352639 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAMV01000011.1 Streptococcus gallolyticus subsp. gallolyticus strain NTS31301958 Cont012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 352939 36 100.0 30 .................................... AATTGACATAGTGGAACGAAAAGTGTTTCT 352873 36 100.0 30 .................................... CTTTGACTATTTTCGTAACTACTACAAAGG 352807 36 100.0 30 .................................... CGAGCTTGTAGAGGAAATCTTACAAACAAC 352741 36 100.0 31 .................................... CAGTTTTATATTTAGGTAATTCTATTTTACT 352674 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCCAGCAATTTTTCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCCAGGATTTGGTGGTGGTACCGAAGGTGATGATGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTAGAAAGCTCATTGGCTGCTTATCTAGATGAAGGTTTAGAGCTTCCAAAGGTTGTTAATATGAGTGAATTATCAGTTGAAGATGGTTTTATCACTTTAATTCAAGCAGACCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACTGTTCCAGAATGGTTAGTCAGATTAGCAGACCGTGAGAATGTGAATTACTCGGAGGTTTTGACACAAGCTTTAGAGAAAAAATTACAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGCTTTTGAGGTATAATATAGTTAAAAATAATGAACCATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : GTCTGGTATTTAGGATTTATCAGAAATAGAATGCCATGAAACTTATTAAAGTTTTAGTGAAAACGCCTTTCAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAGACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATCACTGGCGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGTGCAACATTTAACATCGTTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //