Array 1 28911-28085 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSTN01000006.1 Phocaeicola vulgatus strain OM07-4AC OM07-4AC.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 28910 33 97.0 33 ................................T CATTATACAAACAATTTAAGTTCAATCCTTTTT 28844 33 97.0 32 ................................T ATAGCCTGCAACTCCAGTATCTTCTCGTATAG 28779 33 97.0 33 ................................T CCCAGAAGCATGGAATACCTATTTTTTTGTTAA 28713 33 97.0 32 ................................C CGGAGTACCGGGGAAGGACGGGAAGACCTATT 28648 33 97.0 31 ................................T CCTGTGCCAGACTTTCCAAACTTCTGCCTGT 28584 33 100.0 33 ................................. CGCGGATTACGGGAATTAACTGCGGCAAGTGTC 28518 33 100.0 35 ................................. TCCATACTACAACAGAGAGTAAACCTGCCACTCCT 28450 33 100.0 35 ................................. AGTTAATGATTCCTTCAAACAATGCCGAAATCGTA 28382 33 100.0 33 ................................. CAATATTATTGTATTAGAGTAAAAGGAGATAGT 28316 33 97.0 34 ................................T TTATAATAGGTTTCATGAATGTTCGGCATTTTGG 28249 33 100.0 31 ................................. TATTCTGAACACATTGCAAATGTACAAAAAG 28185 33 100.0 33 ................................. ATGACGAGGTGAATACGTGTATAGACAACCATA 28119 33 93.9 0 ....................A.........G.. | TA [28096] ========== ====== ====== ====== ================================= =================================== ================== 13 33 98.1 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTATTAATGTGTTATTGTCTGTTTGTGTCGATTGTTTTTTCTTATCTTTATAAAATATATTAAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //