Array 1 1979168-1979623 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065640.1 Serratia rubidaea strain FDAARGOS_926 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1979168 29 100.0 32 ............................. GTCGTACCCGGATTATCATCTGCAACAAAAAA 1979229 29 100.0 32 ............................. GCCGTAACAATAGCCGGAGGACAACGAAATCT 1979290 29 100.0 32 ............................. TCACCGGTACTCACATCTTAATCTAAGGACCA 1979351 29 96.6 32 ............................A GCCAGCGCAGTATCGCCGCCATAATAGAAATC 1979412 29 100.0 32 ............................. GGTGTATTTCAGGCCTGGCGCGCCTGCGAAGA 1979473 29 100.0 32 ............................. CAGGTCCCTGTGATGGGTGAAGACGGTCTGCA 1979534 29 100.0 32 ............................. GACATGATTACCGCTGCGTTTATCCAGCAGTA 1979595 29 82.8 0 ..........T.T..A.......T....A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GTGGAGATGATTTACCTGACGCTGGCGTTTATCACCACGCCGATTTTCTACCTTTCCGGCACCATCTGGCCGCTGCAGGCGATGCCGGGCTGGGTGCGCGCCATTTCATACTGCATTCCTTCCACCTGGGCCACCAAAGCGATCGCCGGGGTGAACCAGATGGGGATGTCGCTGAATGAAGTGGGGAACGACGTGCTGATGTTGCTGCTGCTTGGCGCGGTGTATACCGTGATCGGTATCGGAGTGGGGCTGGCGCATAACAGTGTGGCGCTGCGCAGTCTGTTCCGGAAACGGCGGGCGTAGTGTTGCGGGATAAAGCCTGTTCGGTAAGGTGCGGCAGAAGGTGAGTGATGATCTGCTTGGTACAGCGGCTATTCTGATGGCGAAGTGAAAATAAATTAATTGTTTTTCAATTGGTTATATTTTTCAGATTATCGTGAAAAGTCGGTGGCTTTTTTAAGTGGTAAAAAATCAATATAATTCAATTGGATATATTTAGT # Right flank : AGCAGTTACCGCACCAGTTCCAGCCCGGCGACGCGCCGCCAGTAACCGTTGCAGTCGCTGTCGTTGGTCAGCGCCAGCGGCTGCCCGGCATTTTCGTTGGCGCGGAACTGCTCGAGCATCGCCAGCGTTTCCATGCCCTGCGGCGACAGCCGCACGATATCGACCAGCTCCTGCATACCGCTTAGCTCATTACCCAGGTTGTAGCAGTAGCCGCTCATCGTCTGGATGCCGTTGAGCACGAATACCTGCTGGTTTTCCTGTGAGCGCATGGCGCGCCCCTGCGGGTATTTGATGCAGCAGGTTTCGCACTCATCCTTGCCGCGGTTTTCCGAGCGTGCGGTAAAGCAGCGGGCGGAGTAGGCCAGCGGCAGGTGGCCGTAGCCCAGCACCTCTACCTCAAAGCCGCGGCGGAAGCCCAGCTCGGCGCACTGCTCCAGCACCTTGCCCAGCCAGTCGCGGGACAGTTCCACCGGCATGCACCAGCGCGTCATGCCCTGCTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3517872-3518199 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065640.1 Serratia rubidaea strain FDAARGOS_926 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3517872 28 100.0 32 ............................ GTTTGCGACAAACCGGTGTCACCGGAGAAATG 3517932 28 100.0 32 ............................ AACATGTCGAACATCCTCACCGGCAAAAACGA 3517992 28 100.0 32 ............................ ATCGGCTAAATCTTTCCGATGCGGATAAATCG 3518052 28 100.0 32 ............................ ACCACGCTTCAGCCGATCAGGCCACTTTGATG 3518112 28 100.0 32 ............................ TTTTTTTGTCAGCATCAGAAACAGCGCTTTAC 3518172 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCGGGAAGGTTTGCTGCACTTCGGTGCGCACCACTTTATCTGCGCCACCGCACACTGCTGCGGCATCAATGGTTTTCTTCTGGCCAATGCCGGAGACAAAGAAGTGGTGTGTGGTGGTCTGCTTAGGCGCGGCGACCGTTTGGTTTTTCATCGTGAACGTCTGCTGTGCACAGCCGGTAACCGTCATGGCGAGTACTACGGCGGCGAGTAATTTTTTCATTATTTTCAATTCCTTTTTAATCAATCAATATAAAGCGCGGGGATAATGCCACGATTACAGAAATTTACAAGTGTGGGTGACAATAAATAGCGTGCTAAGCGAGGAGGCTCGCGCGACAGAGAGCGGCAACGTAGGGTTGCGCCAACAACCCTTTTTTTAGCACTATGCGTAACTTATTGATATCTAATGGGCGTCTGAGCAGGCGTAAAAAAAGGGTATCGGCGGCTGAAAAGGGGAAAAAGCTTTAATTATTAAGCCGCTGGCCTTAAACTCTAACA # Right flank : AAAAACACTATATTTTCGTGACCATCTTTATATTCGCGACCTTATTGATGGTATAGGGTATTTTTATTGAAAATATTAGGTTTTTATGGAGTTAGGATGAAATATGGAAATGTTAAATAGACTATCCGCTATTCTAAGTTTACCGTTAACCCTGCTGTGCGTGTCGTTCTCATCACTGAAGATTATGGGAGCAAACAACTCACTGATGGATGTTTTCCTGTCGGTGATTGTTCTGCTGGGCTTTCTTAATTTATTTCGGCTGATGGGGCGGTGTATCGTTTGGTTTAACGGAAACGATAAACGGTCAGATTAAATAAATCGCGCCTTTGACCATTCCGGCAAGCCGCATAAACAACGGGAACCCTGGGGTTCCCGTCGTCGATTAACCATCATGCCGCAAAAGCGTCAGCGCCCGCTCACGGCGGCCGGGCTGTCCGCCGTGGCCAGCGTATCCTCCAATACTTCAAACAGGCGGTCGATCTCCTCGCGGGTGTTGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4339250-4339101 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065640.1 Serratia rubidaea strain FDAARGOS_926 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4339249 28 100.0 32 ............................ GGTAAAAATCATCTAGCCTTGGCTATCGCCAA 4339189 28 100.0 33 ............................ CTGAAATACTCGACGAATTAACACGGCGATTTG 4339128 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTGAATTTTATGTGATCTCTGTTGGTTACTGTCCCCAGGGCTGCTCGCTGACATACTGCAGGAAGCTCATCATACCCAGGCAAACCAGTACGCCAACCATTACTATTATCACTAATCTCATAATGTTACCTTCCAGTCGTTTGGTTATCTGTTTCGTTATTCGCACGCCGGCAGGCGTGTGAGTAAAGCAACTTATCTGCCTTACGAATTATTGGCGACCCAGTATAACCAGAACTGGCCAAGGTTGGGAGTCAGGCGGCTAAAGGGTGGGAGCGAGGGCGTAACAGCGGGGCAGATATTTACTATCGGCATAATGGCATCGGGCTAGCCAGGTCGTCGGCTGGTTGCTTTATGATCCGGACTATGCAAACCCTTTTTTTTACGATGTTTCTAAGTTATTGATATATATTGGTTGAATTGAATGCGAGAAAAAGAGCCTTTTCGGGCGTAATCGGCAGGAGTGCTTTTAAAAACAATAGGCTAGTGCTAATCTGCAACA # Right flank : GACAGCAGGGAGCAACGACAGAACGCCGGATGGTTCAGCCGCACAGGCAGCTCCGTCCCCTTGCTGTGATTCTTATGCCTCAACGCGATGACAAACCATTTCGATATTGTGGCCGTCCGGCGCAATCACAAAGGCAGCGTAGTAACTGGCGTGATAATTGGGACGCAGGCCTGGTCCGCCGTTATCTTTACCGCCGGCCGCCAGCGCTGCCCGGTAGAAATCATCCACCTGCCGGCGGCTGTCGGCGATGAACGCCAGATGCAGCTGCGCCGGCTGCGCCGTGGTCTGGTACAGGCACAGTGAGGTATTGTCGGGGGCGGCGATCTCTATCCCATAGTCCGGCGCGCCTTCATCCACCACGCTCACGCCCAGCGGCGCTAGTGCCTTAAGAAAGAAATTTTTGCTGGCCTCATAGTCGCTAACGCCAAATTTTACGTGGTCAAACATAGCTTCCCCTTACCCGTGATGAGCCGTGCGCTCACTCCAGTATAGCCGTGCGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4839678-4838726 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065640.1 Serratia rubidaea strain FDAARGOS_926 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 4839677 32 100.0 34 ................................ TCGCTGCTCGTTGCTCTTACGCTTAGCCATGCTC 4839611 32 100.0 33 ................................ ATCTACATCACCGGGCGCAATGTGGCCGGCGGC 4839546 32 100.0 34 ................................ CCATAACTCACACCACAAATTTACTGTATTTATA 4839480 32 100.0 33 ................................ TCATCACTGACGCAGGCCATTGTGAAAAATCTT 4839415 32 100.0 34 ................................ GTGAATATCAGCGGGTTCAGCATGCGCAGGCCGT 4839349 32 100.0 33 ................................ TTCTCAATACGAGCTTTGCGGTTATCGTATGGG 4839284 32 100.0 35 ................................ ATGGCTAATCAGGACCAGTCCGAGGAACAGCTAGC 4839217 32 100.0 34 ................................ TTGATCATTTCGATAGTGTTCATTGTCCTTCCTC 4839151 32 100.0 33 ................................ TGTATTTTCATGAGCAAAACAAACTGGCGCGTC 4839086 32 100.0 33 ................................ AAGAACCTGATGAGTGACGTTATCCAGGGCGCC 4839021 32 96.9 33 ......T......................... TCACTTATCGGTTGATCCCTCTCGGGGCCGGGT 4838956 32 93.8 34 ...........C.....T.............. AGCACGTTTGTTTTGCCGCTGGCGCCGTACGCCT 4838890 32 93.8 34 ...........C.T.................. ACCAACGACTGCTACGCGCTGGCATTGTATACCT 4838824 32 93.8 35 ...........C.T.................. ATCATGAAATGTGTCGCGAAAGTGTGCCTGAGAAC 4838757 32 90.6 0 ...........C.T.................T | ========== ====== ====== ====== ================================ =================================== ================== 15 32 97.9 34 GTCGTGCCTCATGCAGGCACGTGGATTGAAAC # Left flank : CATATCGTTGAAAGGTTCTCGGAATGATGGTTTTGGTGACCTATGATGTTTCTTTGGCTGATGCTGATGGCCCGCGTCGACTCCGACAGCTAGCTAAAATGTGCTTAGATTATGGCGTGAGGGTGCAATATTCAGTTTTTGAATGCGAAATTGATTCTGTCCAGTGGGTGAATTTTCGAGCCAAACTCCTCAGCATTTATAATGCAGAGGTTGATAGTTTACGTTTCTATCGACTAGGGAAGGAATGGAGAAACAAAGTTGAACATCATGGCGCCAAGCCCGCAGTTGATATCTTCAAAGATCATTTGATCATCTGAATTCTCTTCCGCCAACCTGTAGTCCTCACCAAAAGGCTGGCAGGTTGGCGCGAAACTATTACTATGAAATAAAAGAGAAATTTCTCTAGTCTGTTGATTAGCGGTGTATCTGTGCCTGGTTAACTGTGGGTTGGCGCAAAATGCTTGCTAAAGGTAGACTACACAAGTCCTTGCAATAAGGGA # Right flank : AATCGGGATGAGGGATTGCAGACGGTTGGCCCTGCCGTATTCCATGTAGATATGTGGGTTGAAATTGTGCTGCTTTGAGTAAATCTCATTAATCTTTATGGATTTCAAAATCCCAGGCTTTAAACGGCCTGGGGTTTTTTCGTTGCGCCGCGGACGGCCTGAAAGCAAAGCGGCCCCGACAGGGCCGCCTGTGTAGGTTCAGCGCGGGAACACCACCGTGCGGTTCTCATAGAGAAATACCCGCCGTTCCACGTGCCAGCTGACGGCGCGCGCCAGGGTTACGCGTTCGATATCTCGTCCTTTTTCAATCAGATCCTCCGGGTAGTCGGTATGGGTTACCGGCTCCACGCTCTGGGCGATGATCGGCCCTTCGTCCAGCTCCTCGTTGATATAGTGCGCGGTGGCGCCCACCAGTTTGACCCCTTTGGCCCAGGCCTGATGGTAGGGCTTGGCGCCCTTAAAGCCCGGCAGCAGCGAATGGTGAATATTGATCGCCTTGC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTGCCTCATGCAGGCACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //