Array 1 34104-33940 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796449.1 Corynebacterium sp. HMSC072G08 Scaffold200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 34103 36 100.0 28 .................................... TCACCCTGTACGCGGGGTATACAAACTT 34039 36 100.0 28 .................................... TGGTTGTTACGCGCCCGGCTTCGAGCAG 33975 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 3 36 100.0 28 GCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTC # Left flank : CTGGGGTTCAGTTCTCAAAACCCCTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAGTTCTCAAAACCCCTGATAGACTTCTGCCTACCCCGCAAGCGACGGACTTCAAGCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTCGCAAGCATGGCGACAAGCTGAAAAACATGCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTCCCGCCGGTAACCTCAACGCGGTGTCTGGGCTGGGGTTCAGTTCTCAAAACCCCTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTTCTCAAAACCCCTGATAGACTTCTCTTTGGCCTTCTCCAGCTCCTCTACCG # Right flank : AGCGAGAGATTACGGCGGGTGCCGTCAGGCTGGGGTTCAGTTCTCAAAACCCCTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAGTTCTCAAAACCCCTGATAGACTTCCATGGCGGCGCGGCCCGCGAGTGAGAAAGCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTCAGGTTGGCCTGAAAATGGCTAATTACCTGGGGGTTATTTGTCGATCGCTGTCAAAAAATTACTAGTTGAGATGGTTTTTCTTCTGGTGGAACTTCATCATGTTTGGAAAAGCGGATTACCTTGGACCATTGGTGATCGGTGACGGATAGAATTCGGATGTCTCCACCATGGGGTAGCTCCGTTTTGATCTGCGAGACAGTGGTCGAAACTCGCGAAGCTAGCGGGAAGTATTGAACGTAAACGCTGAGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 34797-34633 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796449.1 Corynebacterium sp. HMSC072G08 Scaffold200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 34796 36 100.0 28 .................................... TCGTTCTCAAACTGTTCTTTCTCGTTTG 34732 36 100.0 28 .................................... GTGGCCGATTGGGACACCGAACCCATGT 34668 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 3 36 100.0 28 GCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTC # Left flank : TGGGGTTCAGTTCTCAAAACCCCTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTCTCAAAACCCCTGATAGACTTCAAGCTCGAGCATGGACGCTCCATACCGTGCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTCGCAGACGGGGCAGCTACCGCCAGGTGAGGCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTCTCTGCGTGCCAGCTGCGCGCAGCGAGTCGCTGGGGTTCAGTTCTCAAAACCCCTGATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCAGTTCTCAAAACCCCTGATAGACTTCTACAAGACCACACACTAACCCCAGACAG # Right flank : ACGACGCGCGGATTCAGGGTGAGGTTGTGCTGGGGTTCAGTTCTCAAAACCCCTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAGTTCTCAAAACCCCTGATAGACTTCTGCCTACCCCGCAAGCGACGGACTTCAAGCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTCGCAAGCATGGCGACAAGCTGAAAAACATGCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTCCCGCCGGTAACCTCAACGCGGTGTCTGGGCTGGGGTTCAGTTCTCAAAACCCCTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTTCTCAAAACCCCTGATAGACTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 36061-35015 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796449.1 Corynebacterium sp. HMSC072G08 Scaffold200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================== ================== 36060 36 77.8 28 .AGAAACCA........................... AGGCTCACGGCTATAAGCCGGTGACCAG 35996 36 100.0 28 .................................... GGCACCGCCACATCAGTACGGCTCTCCT 35932 36 100.0 28 .................................... AGGCTCACGGCTATAAGCCGGTGACCAG 35868 36 100.0 28 .................................... ACCTGGGCGCACAAGACCGAAAGGACTA 35804 36 100.0 28 .................................... ACCGTAGGCATGAAGCTCACCTACAACG 35740 36 100.0 28 .................................... AAAAAGGGGTCGGGCCGTATAGCCGTCT 35676 36 100.0 28 .................................... CACAAGTTCCGCTTTAAGACCCTGTTGG 35612 36 80.6 85 .............................NNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 35491 36 77.8 28 NNNNNNNN............................ ATACCCATGATGGACTCCTGCGACAGCA 35427 36 100.0 29 .................................... ACAAGCATTCCACGAAGAGTGGACCACCG 35362 36 100.0 28 .................................... CTGGAGGCCGTGGACGTCTACCGCGACG 35298 36 80.6 84 .............................NNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 35178 36 75.0 28 NNNNNNNNN........................... AAGCTCGAGCATGGACGCTCCATACCGT 35114 36 100.0 28 .................................... GCAGACGGGGCAGCTACCGCCAGGTGAG 35050 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================================================== ================== 15 36 92.8 36 GCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTC # Left flank : GCCGTTGCCGGCGTGGGCGATGGCCCAGGCGCCGATCATGTCGACGGCGACGAGGCCAGCAACCCAGCGGGTGAGTAGGCCGATGATGAGCAGGATGCCGCCGACGAGCTCGATGATGGCCGCGACCGGAGCGGCGATGCCCGGGGCCGGAACGTCCATGCCCTCGAAGGCGGTGGTGGTGCCCGCGATGGTCCACTCGGTGAACTTCTGCCAGCCGTGGGCAGCGAGGACGATGCCCACGATGAGGCGAGCGGCGAGCATGACAAACGAGCTCGCGAGGTTCATGGTCGATACGGAAATGCCGGAATACTTCATGGGGAGTGACTTTATACTTGAAGTGATGGGGTGTCTAACTTAGTCGGATATTTCTCATCTAAAAGATAAAGTGATTGTGGTTGCTTCATCCATTGACGGGTGGATGTCATGGCAGCCGGGTTGAAATTCTAGGGAAGGTACTGGAACTTTGAATGCTGTCGGTAGCTTGTTGGATCATCTGTATT # Right flank : TCTGCGTGCCAGCTGCGCGCAGCGAGTCGCTGGGGTTCAGTTCTCAAAACCCCTGATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCAGTTCTCAAAACCCCTGATAGACTTCTACAAGACCACACACTAACCCCAGACAGGCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTCTCGTTCTCAAACTGTTCTTTCTCGTTTGGCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTCGTGGCCGATTGGGACACCGAACCCATGTGCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTCACGACGCGCGGATTCAGGGTGAGGTTGTGCTGGGGTTCAGTTCTCAAAACCCCTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCAAAACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 106878-106544 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796464.1 Corynebacterium sp. HMSC072G08 Scaffold397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106877 29 100.0 32 ............................. GCGCGGTATCTGTGACCTCCGAAACGATTCAA 106816 29 100.0 32 ............................. GCGTTACACAATGGAGCGTGACATTCGCCGCC 106755 29 100.0 32 ............................. TCGCCATACACGCCGCCGCCCGCGTCGTTGTC 106694 29 100.0 32 ............................. AACCACTGTTGAAACTTTTCACAAACTCGCAT 106633 29 100.0 32 ............................. CCGGATCGGGTTACCCACAGGCACGCTCACGG 106572 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GGAAATACCTCCGCACGCGCGGAGAAGAG # Left flank : CTCATTTGGAAATACCTCCGCACGCGCGGAGAAGAGAAGTCTTGTGTGGCCATGATTTCGATTTCGATGGAAATACCTCCGCACGCGCGGAGAAGAGAGGGGGCGGTGGTGGTCTTTGACCCAGTAAAAGGAAATACCTCCGCACGCGCGGAGAAGAGACATAAATACCCTCGTCGTAGCGGTTGCCCAGGGAAATACCTCCGCACGCGCGGAGAAGAGTGCTTTTCCTCCATGAGGCGATACACGGACGTGGAAATACCTCCGCACGCGCGGAGAAGAGCCTGTGCCTGTCATGCCCGCGCTCCTCCGCTCGGAAATACCTCCGCACGCGCGGAGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATACCTCCGCACGCGCGGAGAAGAGCGTGTTCAGTTGGGTCAGGGGGAGAGTTTGAG # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAATACCTCCGCACGCGCGGAGAAGAGGGCCCATGAGCCATTCGATCATTTCGGCGCTGGGAAATACCTCCGCACGCGCGGAGAAGAGACTTCCTCAGCTGGAAGTTTACACTTCGGAACGTCGATTTTTCGTCTTCGACGTCGAAAAGGTGGCTGATAGGAGCAGTCCGTCCAAGTCAATAATTGTACGGCGATTGGGGCCTAGCGTATTGATAGCGAATCCTTGCTCTCGTCGGCTGTCTTCATTGATCATGGTTAAACTGCCCTCTTTTAATGCTTCTGAGCAACGGCGCCACAAGTTATCACGGACTCGTTTAGAAACATTGCCAACGTAGACGCCTGTATCGGCTTCAGAGAGGAATCGCGAGAGATAGCCATGCATATGTTGTGGGAGGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAATACCTCCGCACGCGCGGAGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 107098-107431 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796464.1 Corynebacterium sp. HMSC072G08 Scaffold397, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107098 29 100.0 32 ............................. ACGTCCGTGTATCGCCTCATGGAGGAAAAGCA 107159 29 100.0 32 ............................. CTGGGCAACCGCTACGACGAGGGTATTTATGT 107220 29 100.0 32 ............................. TTTTACTGGGTCAAAGACCACCACCGCCCCCT 107281 29 100.0 32 ............................. ATCGAAATCGAAATCATGGCCACACAAGACTT 107342 29 100.0 32 ............................. AAATGAGGGACACGAGTGTCCCTAATTGAACG 107403 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Left flank : GATCCGGCTCTTCTCCGCGCGTGCGGAGGTATTTCCATGCGAGTTTGTGAAAAGTTTCAACAGTGGTTCTCTTCTCCGCGCGTGCGGAGGTATTTCCGACAACGACGCGGGCGGCGGCGTGTATGGCGACTCTTCTCCGCGCGTGCGGAGGTATTTCCGGCGGCGAATGTCACGCTCCATTGTGTAACGCCTCTTCTCCGCGCGTGCGGAGGTATTTCCTTGAATCGTTTCGGAGGTCACAGATACCGCGCCTCTTCTCCGCGCGTGCGGAGGTATTTCCCTCAAACTCTCCCCCTGACCCAACTGAACACGCTCTTCTCCGCGCGTGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCGCGCGTGCGGAGGTATTTCCGAGCGGAGGAGCGCGGGCATGACAGGCACAGG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTCTCCGCGCGTGCGGAGGTATTTCCCGCGCGCGACGCCGCCGAGAATTGGCGGGACACTCTTCTCCGCGCGTGCGGAGGTATTTCCGTAGATTACGCCCAAATGCTGTGCCCAGAACTCTCTTCTCCGCGCGTGCGGAGGTATTTCCTGCCATTCCTGCAAAGCGGTAAAGCAGCACGCCTCTTCTCCGCGCGTGCGGAGGTATTTCCCAGTGTTCGCGTTTGTCTCCTACCTTTTCAATCTCTTCTCCGCGCGTGCGGAGGTATTTCCAATGAGCACGCTTGAGGATGATAGTCACTTTTCTCTTCTCCGCGCGTGCGGAGGTATTTCCCAGTGGCCCTGTGTGTAGAGGGTGCGCTCCAACTCTTCTCCGCGCGTGCGGAGGTATTTCCAATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 107532-108292 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796464.1 Corynebacterium sp. HMSC072G08 Scaffold397, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107532 29 100.0 32 ............................. CGCGCGCGACGCCGCCGAGAATTGGCGGGACA 107593 29 100.0 32 ............................. GTAGATTACGCCCAAATGCTGTGCCCAGAACT 107654 29 100.0 32 ............................. TGCCATTCCTGCAAAGCGGTAAAGCAGCACGC 107715 29 100.0 32 ............................. CAGTGTTCGCGTTTGTCTCCTACCTTTTCAAT 107776 29 100.0 32 ............................. AATGAGCACGCTTGAGGATGATAGTCACTTTT 107837 29 100.0 32 ............................. CAGTGGCCCTGTGTGTAGAGGGTGCGCTCCAA 107898 29 100.0 32 ............................. AATCGCTCGCGTGCTATTGGCCTGGGGCAGAT 107959 29 100.0 32 ............................. CGAGGGTGAACGCTAGGTGCCTCGACTTCCTC 108020 29 100.0 32 ............................. GGGAGCTCATGCGAGACGCCGGGGCCGAGGAG 108081 29 100.0 32 ............................. GTTGCCGGGGACGGGCGGTGGAATGATTGGTA 108142 29 100.0 32 ............................. ACAATCTCACCTCCCTCCATCAGGTAGGTGGG 108203 29 100.0 32 ............................. GATCCTTGTTGATTCGGGATTTCAGGCCGTCC 108264 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Left flank : NNNNNNTCTTCTCCGCGCGTGCGGAGGTATTTCCGAGCGGAGGAGCGCGGGCATGACAGGCACAGGCTCTTCTCCGCGCGTGCGGAGGTATTTCCACGTCCGTGTATCGCCTCATGGAGGAAAAGCACTCTTCTCCGCGCGTGCGGAGGTATTTCCCTGGGCAACCGCTACGACGAGGGTATTTATGTCTCTTCTCCGCGCGTGCGGAGGTATTTCCTTTTACTGGGTCAAAGACCACCACCGCCCCCTCTCTTCTCCGCGCGTGCGGAGGTATTTCCATCGAAATCGAAATCATGGCCACACAAGACTTCTCTTCTCCGCGCGTGCGGAGGTATTTCCAAATGAGGGACACGAGTGTCCCTAATTGAACGCTCTTCTCCGCGCGTGCGGAGGTATTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCGCGCGTGCGGAGGTATTTCCGTGGGGCCAGAGGTGGCGAGGGTCATGTGTTCCTCTTCTCCGCGCGTGCGGAGGTATTTCCGATCTACACGTCAAGGTGTCGCAGTACGGCCTCTCTTCTCCGCGCGTGCGGAGGTATTTCCCGTGGGCAGTATCTTGAGCGTTCCGCGTAGCCCTCTTCTCCGCGCGTGCGGAGGTATTTCCAACGCGATTAAGGAAGCTACCCTCGTCAATGACTCTTCTCCGCGCGTGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCGCGCGTGCGGAGGTATTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 108393-108665 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796464.1 Corynebacterium sp. HMSC072G08 Scaffold397, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108393 29 96.6 32 N............................ GTGGGGCCAGAGGTGGCGAGGGTCATGTGTTC 108454 29 100.0 32 ............................. GATCTACACGTCAAGGTGTCGCAGTACGGCCT 108515 29 100.0 32 ............................. CGTGGGCAGTATCTTGAGCGTTCCGCGTAGCC 108576 29 100.0 32 ............................. AACGCGATTAAGGAAGCTACCCTCGTCAATGA 108637 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Left flank : TCCAACTCTTCTCCGCGCGTGCGGAGGTATTTCCAATCGCTCGCGTGCTATTGGCCTGGGGCAGATCTCTTCTCCGCGCGTGCGGAGGTATTTCCCGAGGGTGAACGCTAGGTGCCTCGACTTCCTCCTCTTCTCCGCGCGTGCGGAGGTATTTCCGGGAGCTCATGCGAGACGCCGGGGCCGAGGAGCTCTTCTCCGCGCGTGCGGAGGTATTTCCGTTGCCGGGGACGGGCGGTGGAATGATTGGTACTCTTCTCCGCGCGTGCGGAGGTATTTCCACAATCTCACCTCCCTCCATCAGGTAGGTGGGCTCTTCTCCGCGCGTGCGGAGGTATTTCCGATCCTTGTTGATTCGGGATTTCAGGCCGTCCCTCTTCTCCGCGCGTGCGGAGGTATTTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCGCGCGTGCGGAGGTATTTCCATGGCGCGGCGGTTGATGGATCGTTGGTGCGACTCTTCTCCGCGCGTGCGGAGGTATTTCCGAGTCGAATAAGCGGTTCCGCACGTTCTTGTCCTCTTCTCCGCGCGTGCGGAGGTATTTCCTGGCACTTCCGTGATGTAATCCTCGTCGGTAACTCTTCTCCGCGCGTGCGGAGGTATTTCCACGCCGCCCGCGTCATATACGCGGCGGGCAATCTCTTCTCCGCGCGTGCGGAGGTATTTCCCAGGCCCATGATTTTTCCGCCGAGTTCACTGACTCTTCTCCGCGCGTGCGGAGGTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 5 109037-108764 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796464.1 Corynebacterium sp. HMSC072G08 Scaffold397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109036 29 100.0 32 ............................. ATTGCCCGCCGCGTATATGACGCGGGCGGCGT 108975 29 100.0 32 ............................. TTACCGACGAGGATTACATCACGGAAGTGCCA 108914 29 100.0 32 ............................. GACAAGAACGTGCGGAACCGCTTATTCGACTC 108853 29 100.0 32 ............................. TCGCACCAACGATCCATCAACCGCCGCGCCAT 108792 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GGAAATACCTCCGCACGCGCGGAGAAGAG # Left flank : NNNNNNNCGGAAATACCTCCGCACGCGCGGAGAAGAGATATCGGAGCCGATAACCTCATATCCCAGATCGGAGATACCTCCGCACGCGCGGAGAAGAGGAATGTCATCGAGGCTTAGTTCGGCGTCGTTGGGAAATACCTCCGCACGCGCGGAGAAGAGGCCGAACGGTGCAGGCAGATTGTGCAGCAGATGGAAATACCTCCGCACGCGCGGAGAAGAGGGGCATCGGGAGATGAATGAGCTCGCACGGGAGGAAATACCTCCGCACGCGCGGAGAAGAGTTGCGGGGCTTGATACCGGCACGATCGATAAGGGAAATACCTCCGCACGCGCGGAGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATACCTCCGCACGCGCGGAGAAGAGTCAGTGAACTCGGCGGAAAAATCATGGGCCTG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATACCTCCGCACGCGCGGAGAAGAGTCATTGACGAGGGTAGCTTCCTTAATCGCGTTGGAAATACCTCCGCACGCGCGGAGAAGAGGGCTACGCGGAACGCTCAAGATACTGCCCACGGGAAATACCTCCGCACGCGCGGAGAAGAGAGGCCGTACTGCGACACCTTGACGTGTAGATCGGAAATACCTCCGCACGCGCGGAGAAGAGGAACACATGACCCTCGCCACCTCTGGCCCCACGGAAATACCTCCGCACGCGCGGAGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAAATACCTCCGCACGCGCGGAGAAGAG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAATACCTCCGCACGCGCGGAGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 6 109632-109843 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796464.1 Corynebacterium sp. HMSC072G08 Scaffold397, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109632 29 100.0 32 ............................. GCGTATGAGATCGGCCCAGAGCCAATCATTGA 109693 29 100.0 32 ............................. ACACCCCGCCGCTACAACAATCAGACGAACCA 109754 29 96.6 32 ...................G......... GGTGACGAGGGGTCTACTGGAGGCGTTTGTGC 109815 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCGCGCGTGCGGAGGTATTTCCCTTATCGATCGTGCCGGTATCAAGCCCCGCAACTCTTCTCCGCGCGTGCGGAGGTATTTCCTCCCGTGCGAGCTCATTCATCTCCCGATGCCCCTCTTCTCCGCGCGTGCGGAGGTATTTCCATCTGCTGCACAATCTGCCTGCACCGTTCGGCCTCTTCTCCGCGCGTGCGGAGGTATTTCCCAACGACGCCGAACTAAGCCTCGATGACATTCCTCTTCTCCGCGCGTGCGGAGGTATCTCCGATCTGGGATATGAGGTTATCGGCTCCGATATCTCTTCTCCGCGCGTGCGGAGGTATTTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT # Right flank : CGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCTTCTCCGCGCGTGCGGAGGTATTTCCTCGTCACCGCCGAGGACTTTCAGGAAGCACCACTCTTCTCCGCGCGTGCGGAGGTATTTCCTACGCCCACGACCGCCGCGCCGGTGACGCAGGCTCTTCTCCGCGCGTGCGGAGGTATTTCCAACACGTGGGACACGGTACGGGCCGGCACTGGCTCTTCTCCGCGCGTGCGGAGGTATTTCTAACCTCACCTGCGCCTTCAACATCATCACCCACTCTTCTCCGCGCGTGCGGAGGTATTTCCGTATCGCTGGGATCGTGGGCAGGTAGGAGCATCTCTTCTCCGCGCGTGCGGAGGTATTTCCGGTGAGGTCAATTTCTCACTCGGCATGCATGACTCTTCTCCGCGCGTGCGGAGGTATTTCNN # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [3.3-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 109947-110340 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796464.1 Corynebacterium sp. HMSC072G08 Scaffold397, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 109947 28 100.0 33 ............................ CTCGTCACCGCCGAGGACTTTCAGGAAGCACCA 110008 28 100.0 33 ............................ CTACGCCCACGACCGCCGCGCCGGTGACGCAGG 110069 28 100.0 33 ............................ CAACACGTGGGACACGGTACGGGCCGGCACTGG 110130 28 100.0 33 ............................ TAACCTCACCTGCGCCTTCAACATCATCACCCA 110191 28 100.0 33 ............................ CGTATCGCTGGGATCGTGGGCAGGTAGGAGCAT 110252 28 100.0 33 ............................ CGGTGAGGTCAATTTCTCACTCGGCATGCATGA 110313 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 CTCTTCTCCGCGCGTGCGGAGGTATTTC # Left flank : CGCGCGTGCGGAGGTATCTCCGATCTGGGATATGAGGTTATCGGCTCCGATATCTCTTCTCCGCGCGTGCGGAGGTATTTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTCTTCTCCGCGCGTGCGGAGGTATTTCCGCGTATGAGATCGGCCCAGAGCCAATCATTGACTCTTCTCCGCGCGTGCGGAGGTATTTCCACACCCCGCCGCTACAACAATCAGACGAACCACTCTTCTCCGCGCGTGCGGGGGTATTTCCGGTGACGAGGGGTCTACTGGAGGCGTTTGTGCCTCTTCTCCGCGCGTGCGGAGGTATTTCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCGTGCGGAGGTATTTCCATGCTGCCGATTCTCATGTCGGGTAGCTCCCCCTCTTCTCCGCGCGTGCGGAGGTATTTCCGCCACCTCAGAATTCGCCAGCGTGGCCTTGGGCTCTTCTCCGCGCGTGCGGAGGTATTTCCCACTGAAATAGGTTCGCACAGAACTGTTGGTGCTCTTCTCCGCGCGTGCGGAGGTATTTCCATGAACGGGAACTAAGTTGGCACGTATTCGCTCTCTTCTCCGCGCGTGCGGAGGTATTTCCTACCGGGGCGAGGTCGACGACGAGCTGCGCGACTCTTCTCCGCGCGTGCGGAGGTATTTCCAGGAAAGTGTGGACGGCGTTATCGAGGGCGTTCTCTTCTCCGCGCGTGCGGAGGTATTTCCGTCCGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCGTGCGGAGGTATTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 8 110500-111077 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796464.1 Corynebacterium sp. HMSC072G08 Scaffold397, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110500 29 100.0 32 ............................. GCCACCTCAGAATTCGCCAGCGTGGCCTTGGG 110561 29 100.0 32 ............................. CACTGAAATAGGTTCGCACAGAACTGTTGGTG 110622 29 100.0 32 ............................. ATGAACGGGAACTAAGTTGGCACGTATTCGCT 110683 29 100.0 32 ............................. TACCGGGGCGAGGTCGACGACGAGCTGCGCGA 110744 29 100.0 32 ............................. AGGAAAGTGTGGACGGCGTTATCGAGGGCGTT 110805 29 100.0 32 ............................. GTCCGAGCGGTAAACGTCGCTCCGTACATCGG 110866 29 100.0 32 ............................. TTTTTACGAACCTGCCCCATCTCCACAAGCAA 110927 29 100.0 32 ............................. GAGTTTCATACCACTGCCCGGAGTTGCGGGCA 110988 29 100.0 32 ............................. CATTCGACCATGCCTTGGTGCAGTCCCAGTGG 111049 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Left flank : AAGCACCACTCTTCTCCGCGCGTGCGGAGGTATTTCCTACGCCCACGACCGCCGCGCCGGTGACGCAGGCTCTTCTCCGCGCGTGCGGAGGTATTTCCAACACGTGGGACACGGTACGGGCCGGCACTGGCTCTTCTCCGCGCGTGCGGAGGTATTTCTAACCTCACCTGCGCCTTCAACATCATCACCCACTCTTCTCCGCGCGTGCGGAGGTATTTCCGTATCGCTGGGATCGTGGGCAGGTAGGAGCATCTCTTCTCCGCGCGTGCGGAGGTATTTCCGGTGAGGTCAATTTCTCACTCGGCATGCATGACTCTTCTCCGCGCGTGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCGTGCGGAGGTATTTCCATGCTGCCGATTCTCATGTCGGGTAGCTCCCC # Right flank : CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCGCGCGTGCGGAGGTATTTCCGGTGGCCATCTCGATGGGCGCGTACCGGTAAGCTCTTCTCCGCGCGTGCGGAGGTATTTCCTACATGGTGCTGTCACAGCCGTTGGTCAATTCCTCTTCTCCGCGCGTGCGGAGGTATTTCCGTGGCGGCGGCGATGGAGGATGTCGCGGCGGTCTCTTCTCCGCGCGTGCGGAGGTATTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCTTCTCCGCGCGTGCGGAGGTATTTCCACCGTCATTGTTCTGGAAACTGATCACTCTGTCTCTTCTCCGCGCGTGCGGAGGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 9 111492-112314 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796464.1 Corynebacterium sp. HMSC072G08 Scaffold397, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111492 29 100.0 32 ............................. ACCGTCATTGTTCTGGAAACTGATCACTCTGT 111553 29 100.0 32 ............................. CGGTTCCGTTGGGGCATGTTGGACGCTAACGG 111614 29 96.6 32 ......................G...... GTGGTGGAGGCCGGATCGGAAGTTCCGGATCT 111675 29 100.0 32 ............................. ATCGTTGCTAATGCTGTCACGGCGGGCAAGAT 111736 29 100.0 32 ............................. GTTATCTACACGCGTAGGGCTGTTAGGTTCTA 111797 29 100.0 32 ............................. CCATCCCAGTCCCAGACCAACGACCGCATGGC 111858 29 100.0 32 ............................. GATGACGGAGGCGCAGGCACCGGATCCACGCT 111919 29 100.0 32 ............................. GATCCAGGTGAGAAGCTTGGTCGCACGATTTC 111980 29 100.0 32 ............................. CAGATGGACGGGGTGGACACGTTCACGGTGAC 112041 29 96.6 32 ...............A............. TTGGTCCATGACGCCGGTGGCAAAGGGAACGA 112102 29 100.0 32 ............................. CGGGGAGATTCCTACTGTTGGGTCGTTCCCGG 112163 29 100.0 33 ............................. GTCGCGTGACAGCCATACCCACAGCCTCCATCG 112225 29 100.0 32 ............................. AATTACGAATTGGGAGGTATCACCGTTAGTCG 112286 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.5 32 CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Left flank : TCTCCGCGCGTGCGGAGGTATTTCCCATTCGACCATGCCTTGGTGCAGTCCCAGTGGCTCTTCTCCGCGCGTGCGGAGGTATTTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCGCGCGTGCGGAGGTATTTCCGGTGGCCATCTCGATGGGCGCGTACCGGTAAGCTCTTCTCCGCGCGTGCGGAGGTATTTCCTACATGGTGCTGTCACAGCCGTTGGTCAATTCCTCTTCTCCGCGCGTGCGGAGGTATTTCCGTGGCGGCGGCGATGGAGGATGTCGCGGCGGTCTCTTCTCCGCGCGTGCGGAGGTATTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTCTCCGCGCGTGCGGAGGTATTTCCGGTAATTAAGTGCGTCCGTAAGGGTGGGGCGGCTCTTCTCCGCGCGTGCGGAGGTATTTCCGCTATTCGTCCTCGTCTGTGGCGACACCTGCCCTCTTCTCCGCGCGTGCGGAGGTATTTCCAAGGGCAAGCCCGAGCGCGTCCTCAACGCCACCTCTTCTCCGCGCGTGCGGAGGTATTTCCTCTTCGCCGCGATGCGTGACGCCGGATGGATACTCTTCTCCGCGCGTGCGGAGGTATTTCCGGTGCAAAGGCAGACCCAGAGTTCGTCGTAAACTCTTCTCCGCGCGTGCGGAGGTATTTCCAAGTTCACCTACGACGGGGCGACCTACGAGGTCTCTTCTCCGCGCGTGCGGAGGTATTTCCATA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 10 112477-113299 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796464.1 Corynebacterium sp. HMSC072G08 Scaffold397, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112477 29 100.0 32 ............................. GCTATTCGTCCTCGTCTGTGGCGACACCTGCC 112538 29 100.0 32 ............................. AAGGGCAAGCCCGAGCGCGTCCTCAACGCCAC 112599 29 100.0 32 ............................. TCTTCGCCGCGATGCGTGACGCCGGATGGATA 112660 29 100.0 32 ............................. GGTGCAAAGGCAGACCCAGAGTTCGTCGTAAA 112721 29 100.0 32 ............................. AAGTTCACCTACGACGGGGCGACCTACGAGGT 112782 29 100.0 32 ............................. ATAATCGCGGTGAGGTCGTGTATGAAGCAGGC 112843 29 100.0 32 ............................. TATGAGCCCGAGCTCGTGGCATCCATGCCCGA 112904 29 100.0 32 ............................. ACCACAGGGTCGGGCGCATCGGACCCCCCTCC 112965 29 100.0 33 ............................. CACCTTGAATGGGTGGCCTGGCCCTGAAGGGGG 113027 29 100.0 32 ............................. TTTGAAAAACTCCTCGAATTTGATCGACTTGA 113088 29 100.0 32 ............................. CACATCGTGTCGCTGGACATGGCTAAGGAAAT 113149 29 100.0 32 ............................. GAACATCATGCCGCCGGGTGCCGCTTCACGGG 113210 29 100.0 32 ............................. ATCCGCCTGCGCATCACCCACGTCGACGGCAC 113271 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Left flank : TTCCTCTTCTCCGCGCGTGCGGAGGTATTTCCCAGATGGACGGGGTGGACACGTTCACGGTGACCTCTTCTCCGCGCGTACGGAGGTATTTCCTTGGTCCATGACGCCGGTGGCAAAGGGAACGACTCTTCTCCGCGCGTGCGGAGGTATTTCCCGGGGAGATTCCTACTGTTGGGTCGTTCCCGGCTCTTCTCCGCGCGTGCGGAGGTATTTCCGTCGCGTGACAGCCATACCCACAGCCTCCATCGCTCTTCTCCGCGCGTGCGGAGGTATTTCCAATTACGAATTGGGAGGTATCACCGTTAGTCGCTCTTCTCCGCGCGTGCGGAGGTATTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTCTCCGCGCGTGCGGAGGTATTTCCGGTAATTAAGTGCGTCCGTAAGGGTGGGGCGG # Right flank : CGAGCACAACGCCTACACCGCGCGTTCGAGCGACTCTTCTCCGCGCGTGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCGCGCGTGCGGAGGTATTTCCATGGACCACTTTGCACGCCATGACGTGGTTACCTCTTCTCCACGCGTGCGGAGGTATTTCCAAGTATGGAAGATCTAAGGAGTTTCTAATGGCCTCTTCTCCACGCGTGCGGAGGTATTTCCACCAGAGACTCTCATGCGGCTGGGGAAATCCTCTCTTCTCCGCGCGTGCGGAGGTATTTCCATTCGCGCCGGTCTCATCCCAGGTGATAGTGACTCTTCTCCGCGCGTGCGGAGGTATTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 11 113831-114225 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV796464.1 Corynebacterium sp. HMSC072G08 Scaffold397, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113831 29 96.6 32 N............................ TCTTTCGGCTTCTTCCGCCATGCCAAGCAAGT 113892 29 100.0 32 ............................. TCCAAGGTCAAGCTCGCAGACCTCAACTCACG 113953 29 100.0 32 ............................. GTTCCTTGAAGCGGCTAACGCGGACGTACTGA 114014 29 100.0 32 ............................. CTCAAAGAAATGTACGGAGTCACCAATGACTG 114075 29 100.0 32 ............................. GCGGGTAACTGCCGTGGCGGGCAAGCAAACCA 114136 29 100.0 32 ............................. AATATTATGCCGCTGTGGCTATGGCCGGTCCT 114197 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Left flank : ACTCTTCTCCGCGCGTGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCGCGCGTGCGGAGGTATTTCCATGGACCACTTTGCACGCCATGACGTGGTTACCTCTTCTCCACGCGTGCGGAGGTATTTCCAAGTATGGAAGATCTAAGGAGTTTCTAATGGCCTCTTCTCCACGCGTGCGGAGGTATTTCCACCAGAGACTCTCATGCGGCTGGGGAAATCCTCTCTTCTCCGCGCGTGCGGAGGTATTTCCATTCGCGCCGGTCTCATCCCAGGTGATAGTGACTCTTCTCCGCGCGTGCGGAGGTATTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCGTGCGGAGGTATTTCCATGCTTGGCTGCTCCCGTTCTGGGACAGCAAGCTCTTCTCCGCGCGTGCGGAGGTATTTCCACTACTGCACCTGCGGAGGAATTTCCCAGCCAGTGCAGAACTTCCGGCACCGTCGACATCGGCGCGTTGAAGACGAAGATCCTCGAGACCGTCCGCGACATCAACCTCGCAGACAACACCGTCGACGGCGAGGACGACGAGTAGGCAGCATCCCTACGCTGTACCAACACCGGAGTTCTCGCACAGACATTCGCAGCTTCCGGCAGACATGTCGCCGCTGCCGCTTAGAGTAATCCATGTCTTCAGAAAGCGCCCAGCGCAGGCGGCACGCTCAGCACGGCCCGCGAGATAAGGCCACGGCGAAACCACACG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCGTGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //