Array 1 16857-15241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABL01000013.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM 22577 22577_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16856 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 16794 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 16733 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 16672 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 16611 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 16550 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 16489 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 16428 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 16367 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 16306 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 16245 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 16184 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 16123 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 16062 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 16001 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 15940 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 15879 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 15818 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 15756 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 15695 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 15634 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 15573 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 15512 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 15451 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 15390 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 15329 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 15268 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1062-2959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABL01000004.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM 22577 22577_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1062 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 1123 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 1184 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 1245 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 1307 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 1368 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 1429 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 1490 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 1551 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 1612 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 1673 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 1734 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 1795 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 1856 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 1917 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 1978 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 2039 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 2100 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 2161 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 2222 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 2280 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 2341 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 2402 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 2463 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 2524 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 2585 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 2646 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 2707 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 2808 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 2869 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2930 29 93.1 0 A...........T................ | A [2956] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //