Array 1 1651140-1652817 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJZ01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03985 2014LSAL03985_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1651140 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1651201 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1651262 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1651323 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1651384 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1651445 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1651506 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1651567 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1651628 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1651689 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1651750 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1651811 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1651872 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1651934 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1651995 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1652056 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1652117 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1652178 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1652240 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1652301 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1652362 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1652424 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1652485 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1652546 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1652607 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1652668 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1652729 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1652790 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1669091-1671072 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJZ01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03985 2014LSAL03985_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1669091 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1669152 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1669213 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1669274 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1669335 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1669396 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1669457 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1669518 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1669579 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1669640 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1669701 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1669762 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1669823 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1669884 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1669945 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1670006 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1670067 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1670128 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1670189 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1670250 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1670311 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1670372 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1670433 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1670494 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1670555 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1670616 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1670677 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1670738 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1670799 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1670860 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1670921 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1670982 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1671043 29 96.6 0 A............................ | A [1671069] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //