Array 1 7288-6263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWT010000027.1 Streptococcus salivarius strain DS85_40B NODE_27_length_10042_cov_37.898168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7287 36 100.0 30 .................................... TAACTACAAGACTCTTAATACACTTCTTGT 7221 36 100.0 30 .................................... AAACCTAAGAACGACCAGGAAGCTAAGAGA 7155 36 100.0 29 .................................... TCGTTCTCAGCTACCTTGCTACAAGGTCT 7090 36 100.0 30 .................................... AGCAGATTTCGAGAATCTACACCGTCAACC 7024 36 100.0 30 .................................... CGAAGAAGTCTTGATGATGAATCCCTTGAC 6958 36 100.0 30 .................................... TACTGCCCTTAAGAAAGTTAAGAATGCTAT 6892 36 100.0 30 .................................... AGGGCCATGCGTAACTATTTGATGTTGTAA 6826 36 100.0 30 .................................... AATTAAAAAAGTTATCCAAGCACAAGGTAG 6760 36 100.0 30 .................................... ATACCATCCTCTCTATGTAGATGGTGCTAG 6694 36 100.0 30 .................................... TAATGGCTAGCGATACCACTAACAGAATTG 6628 36 100.0 30 .................................... CTAACTTGGTGCCAGTTTTGCCCAAATTCT 6562 36 100.0 30 .................................... ACCATTCGATGGTCGTAAGGTTATTCAAGG 6496 36 100.0 30 .................................... AATATTTTGAGCGATACAAAGACACATACA 6430 36 100.0 30 .................................... GTCTATCTCGACAGATTCAGCGCCATCAAT 6364 36 100.0 30 .................................... AGACTTAACACCTGTACCTAAAGAATTAAC 6298 36 94.4 0 .............................T...T.. | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TAAAAAGAGAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGACGGATTGGGAGGTTTCAACAATTTGTTTTAGATAAAGATTACATTTTGATGCCCTATAATAACTTGTAATTTGGTAATGAGTATAGATAGTCTTGAGTTATTTCAAGACTATTTTTTTAGTGTTTCTGTATAAAGTTGAGTAGAAGAATCATTTTGTTAGAGAGTAGATTATAAGGTTTTGATAGAGGAGGAGTTAAATTGGTTGCCATAAGATTCCTAAGAAATACTCCAATATGGTGACAGTGACATTTTGTCTAAAACGTTGATATATATAGCTTTTTAAGGTATAATAAACATAAAAATGGGATTATTTTGAAGCTGAAGTCAAGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAAAAAAGACAGTCTACGAG # Right flank : CTTTGTTATGACGATTTTCGGTTGACTTCTCTTAAAACTCATCTTATCATAGAGGAGTATAGTATTGAAATGGGGGAAGAGATATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGATTTTGGTCGTAGCATTAGGGCAGATTCTTTACCTCTTGCCATGACAAAAGCGTCTGTGTTCTTATCACATATTATTAAGGGGTATGGAGATAAGGCTTTACCTGAGCCGACTGCGGTAAGCAGCATTCCTAATGAGGAAGAACTCGTCGTGTTAATCCAAACAGAGCTTGATTAAGACTAAAAACTCTCGGAAGCTTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAAAATTTGTAAATACGAGAAGGGTTCTCCTAAGACGACGACAGCCGCTAGAATTGAGATAATTGTCGAAATCCCAATAAAGGATGCTGTTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 89848-91259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWT010000004.1 Streptococcus salivarius strain DS85_40B NODE_4_length_139277_cov_33.176653, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 89848 36 100.0 38 .................................... CGCCACTTGAAATTAGATTACGGAAAATTTGCACATTT 89922 36 100.0 36 .................................... CATAAGAGCAAACATATAGAATATCACTTAGTTTCA 89994 36 97.2 38 .....................C.............. TGTTGTGCTTCTGTCAATTCTGCGAACGCTTTACCAGC 90068 36 94.4 34 .......C.....T...................... ATCTTTGTAGCTCCCTTTCTTTATCTTACATATC 90138 36 100.0 36 .................................... TTGGAAAAACTGTTTATAAGAGCCTTTTTTGTGCGT 90210 36 94.4 37 .............T.......T.............. ACAGCATTTACAAGCTTAGTCTTGTAGTACAAGTAAA 90283 36 86.1 35 ............AT.......C.......A....G. AGCCTGGCGAGCTACCCAACTGCTACTACCCTGCA 90354 36 77.8 37 TTG...C.T....CC......C.............. CTAGACCTAATTCGATTTTTCCTTGATTGTTTGCCAT 90427 36 86.1 35 .............CC...CT...C............ TATTTGTCTGTAAGTTTGTAACTTGAAATGTCATT 90498 36 94.4 36 .............C.......C.............. AAACGACCAGACAAAACGACATTATTCATAAGATTT 90570 36 91.7 37 .............TC.................T... TTCTTCTTCTTGAGTTTCTACGTCATTCTTTTCGACA 90643 36 94.4 36 .............C.....T................ TGATTATTTTGATAAAAGGTTAAACCAACATCACCG 90715 36 97.2 39 .............C...................... GCAAGCGACGCTGACTGAGCAGTCTTTCCATAGAGAGCG 90790 36 86.1 38 .............CC......G...A......T... AGCATATTACTGTTAACTAGTTCTTTAAGTTCACTTAA 90864 36 94.4 36 .............T.......C.............. TGATTTTTAAATCTTCCTCATAGCGTTCTTGATTAG 90936 36 94.4 35 .............TC..................... TGTCTGTTCATTGTAACCGTTGTTCCCAAGTTACC 91007 36 88.9 37 ............CCA.................G... ATATTTTTTTGCCTGATCGGGCTTTTCTGCTAAGAGT 91080 36 91.7 36 .......C.....TC..................... AATAGCCCAGATTGCTCTAAAATCCACTCGAAGACT 91152 36 77.8 36 ..A...C......TC....T.CA............A TCGCTTGGTGTGACTGTCACGTTGCCAGCGTTGTCA 91224 36 72.2 0 .......T.A...C...............TTTTTTT | ========== ====== ====== ====== ==================================== ======================================= ================== 20 36 91.0 36 GATATAAACCTATATACCTCGAGAGGGGACGGAAAC # Left flank : AAGAGTTTATTAGGGCTTTTAGAGAACTTGACCCTAGTCTGTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAATCTCAGTGAAGAAGAACGTGAGTTTGCCAAACAAAAAAACATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCCAAATTACTTGAGGGTTATGGTGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGACTATCAGTCTCTTCTTAATGATATCGAGAGCTTCTACAAGGCTGATGAAGAAGACAGCATAATCGTATATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGGCCTGCAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGTCTCTAGCAACTGTCTAGGGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAGTCTTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGGTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAGGGAGTCAAATGAAAAAATTAGTACTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACTAAGGTAATCCAAGGAAAAGAGGACACGCAGTGGGTTGTGCATCTGCTCACAGATGACCTAGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGACCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGACAATCAAACCTATTTTTCAATCATTTTTGAG # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTATATACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 11209-11052 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWT010000006.1 Streptococcus salivarius strain DS85_40B NODE_6_length_124435_cov_45.500909, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 11208 25 100.0 41 ......................... AGTAACAAAACCTTGTACTTTAAAGGTTAACCTTCCTCTAA 11142 25 96.0 41 ........G................ GGTAACAAAACTAAATTTAATTAAAAAGAGCTAATACTTTA 11076 25 96.0 0 ........A................ | ========== ====== ====== ====== ========================= ========================================= ================== 3 25 97.3 42 GTTTTAGTTCCATGTCAAATAGAAC # Left flank : TTTTGTCCGTCTACCCAAACTCAAAACAAAAAAAGCATAACAAAGAAGCCGGCAAGCCTTGTCTCAAAAAACAAGGTTGCGCGTGCCTATGGCAAACCATAGGATAAACTTCTCGTTATGCTTACTTGCTAATAACGTTTGTTGTAGCCTTTCAATCAATTAGGCAAATATCTCGTACCTGTTTCAAAGCGTCAAGCCTCTTCTTCTGTCTGATGACTTAACTGATAGCTAAAAGCGAGTACGCTCCCTTTTAACCCATTATAAAACATGGTATGCCTATTGCTGGGACAGAACCAGTAATGACATCTCCTCCTCCATGTTTCCTCTTTTCTTTAGTCACGTGACCAAAGGTTCACCGTTTGAGGTGGTGAAAAAAAGATATAAATTAAAAATTTATGTCTTTAGTATAGCAAACACATAAAAAAATAGCAACCTAAGAATAAAAGTGACTTACCGTAAAATAAAAAAAACACCTAAAAGGTGCATGATATACAGTTTAT # Right flank : AATAACAAAACCTCGACATGGACCAGCTCCCGACCTTCTTGCCTTGGCTTCCGGTTAGGCTATCTGGTATTTACAAGGTTATTCATAATTACCTTGAAGGTTCCTAAATAAACCTTTTTAGTTATTATAACATATTTATCGTTTGAGGCAAGGAATCAAGCAAATAACCCTATATCACTTATTCTTATGTTTAATCTTGTTCAGTTTAAGGTCTTTGAAAGAAAGTTTATTCTCTAAAATAGCCACAAATTCATATGGAGCATTAAACATAATTTCAAAGCCTTTTTGTTTACGCTGGTCAAACCAAGACATCTCTTCTGGGTTATAATCCTTACGGGATTGCAAGGATTTGAAGTCCTCTTGATAAAGAGTAAAGGTATCACCCAACATCAAGATCTGATTAGCAATCCGTCCAAAACGGTTCTTTCGTGCTTTTTTTACCTTATGCCAGATATAATGTTTTTGGTCTAGAAGTTTCTTATAGGCTGAGTCCTGCACCC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTCCATGTCAAATAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //