Array 1 108479-107107 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCB01000001.1 Salmonella enterica subsp. enterica serovar Jukestown strain BCW_2708 NODE_1_length_550738_cov_0.525252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108478 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 108417 29 100.0 32 ............................. CCGGCGTTCGTTATGCAGCTCTCTAACGACTT 108356 29 100.0 32 ............................. GTTGCAGAATGTTCACGGCGTGGCAATTCAAC 108295 29 100.0 32 ............................. GTGCGCATAGAGTCCACAGGTTGGCGTCATCA 108234 29 100.0 32 ............................. GTAAGGACGACGGCGGCAGTTTTCAGGGAATG 108173 29 100.0 32 ............................. CTTAATCCTTTATCTTGTGCTTTGCTTAGTGA 108112 29 100.0 32 ............................. CAGCTTATCCGTGAATACGGTCTCCTAATCAG 108051 29 100.0 32 ............................. CGTGTCGAATGTAACGCAGCGCATAGCTGATA 107990 29 100.0 32 ............................. AGCCATCATTGCAATCAATTTATCCACACTGA 107929 29 100.0 32 ............................. GTACACCTGACGGATATAACGCAGCGCATAAC 107868 29 100.0 32 ............................. CAGTCAACCATATCCGTGCCATAACGCAGCAT 107807 29 100.0 32 ............................. GCATTGTTGAGCAGCTAAATAAACTACCCGGC 107746 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 107685 29 100.0 32 ............................. GCGGAGATCCGGGGGAGCTATTTCAGGTCATA 107624 29 100.0 32 ............................. CCCACCGCCCAGCCCGGATATAGTGAACTGGT 107563 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 107502 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 107441 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 107380 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 107319 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 107258 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 107197 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 107136 29 93.1 0 A...........T................ | A [107109] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCTGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACTGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126313-124638 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCB01000001.1 Salmonella enterica subsp. enterica serovar Jukestown strain BCW_2708 NODE_1_length_550738_cov_0.525252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126312 29 100.0 32 ............................. AATGCCCATCGGGTCGTCGGGTTTAACTTTGA 126251 29 100.0 32 ............................. TCGTCGAGACTGTCGAAATCAGTACCCGGATC 126190 29 100.0 32 ............................. CATTATTTTTACGATAACCCCGCGAGCGACAC 126129 29 100.0 32 ............................. GGCGTGAGCACTCGGCTCGTATTTGACGCATT 126068 29 100.0 32 ............................. AATCGTCAACTTCGACGAAACCACAACCGAAT 126007 29 100.0 32 ............................. AGTACACCACTTTGTTTGATGGTGCTGCGGAG 125946 29 100.0 32 ............................. TTTTGCCATCGCCGGCAAACCCCATAATCCCC 125885 29 100.0 32 ............................. CGGCCTTTTTTATTATGAGCGAACATTATTTT 125824 29 100.0 32 ............................. AATTTGCGGCGGTGTTAATTGCAAGTGCGTTT 125763 29 100.0 32 ............................. CGGGCACAACGTGCCCGCGATAAAGAGGCGGC 125702 29 100.0 32 ............................. AAATGTTTACACCTTCAAATACAGGTGAGAAA 125641 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 125580 29 100.0 32 ............................. ACGCTTACGACACGTTTCATACCGTGCTGAAC 125519 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 125458 29 100.0 32 ............................. ACGATTCAGGACGTGCTGATTTCTGGGTTGGT 125397 29 100.0 32 ............................. GAGGTAAGCGCCGATCAGGAGAAATTAAATAA 125336 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 125275 29 100.0 32 ............................. AAGCGGCAGCTTTGCCACTTCCATGTGGCAGT 125214 29 100.0 32 ............................. AACGATTAAACCTGCCAGTTATCGCTGAACAG 125153 29 96.6 32 .....T....................... TCCGCTGCGGTCAGGTGGCTGACGTCGTTTGT 125092 29 100.0 32 ............................. ACCATAAAAAATGGGATATCTATCAGGACTTC 125031 29 100.0 32 ............................. GTGGCATTTGCCCGCCGTTATGGCGTTGGAGT 124970 29 100.0 32 ............................. ATTGCGACAATAGCCAGCACAGCGAGCAACCC 124909 29 100.0 32 ............................. CTTATTTGCCCGGATAATTGAGCCATAAGCAT 124848 29 100.0 32 ............................. GCGGCAGTATGACGTACCAGCTTATCTACGTT 124787 29 100.0 32 ............................. GTATCGAAACGGCGCTTGCCGCGTACCAGATT 124726 29 96.6 32 ............T................ GCTCACAGAGTTACATCCTCGATTACGGTCTA 124665 28 86.2 0 ...........AT...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //