Array 1 1182-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRJV01000270.1 Xenorhabdus nematophila strain C2-3 Contig270, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1181 29 100.0 32 ............................. GATAGACACAGAGTCGCTGGAATGTTTGCGCA 1120 29 96.6 33 ............................A ATGAATGCCGCTTTAACGGCCAAATTAAAAAAC 1058 29 96.6 32 ............................A TTTAGAAATGGCGTAAACCCGCCAGAGCAGGC 997 29 100.0 32 ............................. CCTTGTTAGCACCACGAACGACATAGACTGTA 936 29 100.0 32 ............................. ATTACTAATCAAACAGACGGGACGAGTTTTAT 875 29 100.0 32 ............................. TCTACACGATGAATGCAGGTAATTTGACTATT 814 29 100.0 33 ............................. AAATATTGCAGCGGGCTGAATGGGATAGAAAAC 752 29 100.0 32 ............................. GTGTTGCTCAGACGTTGGGTGTCGATCCTCAT 691 29 100.0 32 ............................. ACATACTCCCCCTCTTTTTGGTGAAATTCTCG 630 29 100.0 32 ............................. ATGGGAAACATTCCCCTTTATCATTAGCATTG 569 29 100.0 32 ............................. GTCTCATCCCTGCCCACTCATGGGGGTGTTAT 508 29 100.0 29 ............................. MAGTTACTACAAAGTCTTATACCCRGTGG 450 29 96.6 32 A............................ TAATTTGCCGTAAAACAATGTCCGACTGTTGG G [446] 388 29 100.0 32 ............................. TAACTTTCCTCCTGGCTTTCTGTATAGGCATT 327 29 100.0 32 ............................. GAAATTCGCTCTTTAACATTACCGGAACAGAT 266 29 96.6 33 ............................A GGTCACCCGGTATTTTCTGCCCTGATAAATCAC 204 29 96.6 32 ............................A AGGTGAGAATGCAGAGCGGTTAATTCAGGCTC 143 29 96.6 32 ............................A GTGGCTGACCTTTCAAATGGATATACGAAGGT 82 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.7 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : AAACCGCGGTTTCAGACACTGGACATTGGGCTCAGAC # Right flank : AGAAACGCTTAGCTTCTTCTGCCGGCAACCTATCGTGTTCCCCGTAAGTACGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25-522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRJV01000211.1 Xenorhabdus nematophila strain C2-3 Contig211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================== ================== 25 29 100.0 32 ............................. CGAGCCGTAGAAACGTATGACCAAAAACCGGA 86 29 100.0 32 ............................. CATGGGTCAGTTTAAATGGGGACGTGATATGT 147 29 100.0 32 ............................. GCAGAGCATAATGAAATTTCACAATTAATTGT 208 29 96.6 33 ............................A GAAAAAGCCCGGATAGGTGTGGCCAACAGAGCA 270 29 82.8 132 ......................G.GCGT. AACGTTTTTTAAGCTTGAATTGTATGTTATGAAATCACATATCGGGCAAAAATACCTCAGAATGGTCTTGTTAAGGCATTGCTTAGTATTTTATTTGCTCTATTTGATCAAAAATAAGCCTTTCATGCTCTC CA,C [287,292] 434 28 82.8 32 ACC..-G...................... CTTACGGCGGTATTGCCAGCGGGGCGCAGATT 494 29 86.2 0 .............A.....A..C....T. | ========== ====== ====== ====== ============================= ==================================================================================================================================== ================== 7 29 92.6 49 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : CCCCCAATGATWAAAAATACGTGAG # Right flank : GCCACGCTGCATCTTGAAATCCATTGGATATAGAACTTTTTACCATATTTGAGGAAGATCGCAAAAATTACTCGTAATGTAGTTTAACTCCAAACTTCCTCATACAAGTTTGGGGCTAAACATTCAGGCTGTTAAAACAGAAAAAATAAAAACTACCCACGATAATACAATATTTAATAGCTTATTTATTTTAGCTAATCTGAACATTAAGGTGAAATATGATGATGGAAATACAATAATCATAAAACAAAAATACATCAAACTCATGTTTCTAAATAGCTGTTCCTAATATTGCTACACTTTTGCTGTGCCATGTTTATTTCCTGGGAATGGGCTAACCGTGTTCATAAAGCCACGCACTTTTTCTCAATAACTGCCACATATAACAGCAACAATGATTACGTGTAATCGTTTCATGGAGTGCTAACCATAATTTTTCAATATGATTTATCCATGGGGAATAAATCGGTTGATAAATCAATTTGAATTTCGGATTTTCG # Questionable array : NO Score: 4.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-1.67, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 954-1531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRJV01000283.1 Xenorhabdus nematophila strain C2-3 Contig283, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 954 29 100.0 32 ............................. TCAGAGATGACTAGTTTTTTAAATGTATTGCA 1015 29 100.0 32 ............................. ACGACGTAAAACAGGATTATGACGCCGGGTTT 1076 29 100.0 32 ............................. CAGGAGCAAATCAAATGAGATATCTGACATTC 1137 29 100.0 32 ............................. ACAGGACAATTACTTTTGCTACCGGCCTTGAA 1198 29 100.0 32 ............................. CGGTTTCAGACACTGGACATTGGGCTTTGACA 1259 29 100.0 32 ............................. GTTGCAAAACTCCTTGATTCTGCTTTGGAAGG 1320 29 100.0 32 ............................. AAACGTATTAACGCAATAGTTAATATCTCTTC 1381 29 100.0 32 ............................. AATAAGAGAGCCGTCAATTTCGTTTGGTTTAT 1442 29 100.0 32 ............................. TTCTCTCATTCTGGATTTAACCAGTTCATACC 1503 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : AATAGCCAGTGGCCGTTTACTGCCATCCTCTTTCGGGATCTGCGTGATTCTGGCGGCTTTCGGACGATACGTCCCTCTGCGTATTCGCAGGATAAGATTGTGAATATTCCCATCAAGATGTTCACCGTAAGCGGCTTTTGTCATGCGATCAATACCTACCGCTTTATTCCCGTCAAGCCGCAGGAACTGTCCTTTCAACATGTCGCTGTTCAGCAAATGCCCTAAGTTATTGAACACCTGCTGTTTGTTATCTGCTGATTTCTTGCTTATATGAAAGCGTTCTCATTTTGGTTAAGGCTAACAGGTTATTTTGCGATTGCTGCGATAGGTGTCTTAGAATTTGATAAGCCAAAATGAAAAATATGAGTGAAATGCGATCTGCATTGCAGATAGTGATTCAGGAAAAATAAAAGAGATAATTTAACGGATTTATTGGCTGAAAAAATGGTAGAATTTTTATGCTCTAAAATTATCTTATAAAACAGATGGATAAAATTAGA # Right flank : ATGCATCATTCCAATAACGCACGATGATCAGTGTTCCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10141-10291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRJV01000046.1 Xenorhabdus nematophila strain C2-3 Contig046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10141 29 100.0 32 ............................. CGTAATGCTTTTTTCAGCTACCGTTTTAACGC 10202 29 100.0 32 ............................. ACAGTGAGATAACGCCCATCTTCATATTTCAG 10263 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GAGGTCTCCGTAGGTACGGAGATAAACCG # Left flank : CCTGATTGAAGAAATCCTTGCCGCCGGCGAAATCTCACCGCCACCACCGCCTGCTGATGCCCAACCGCCTGCCATTCCCGAACCTATATCCATCGGTGATATAGGTCACAGGAGCCAGTAAAAATGAGTATGACGGTTGTTGTGACAGAAGCTGTTCCGCCCCGGTTGCGGGGACGTTTGGCCATTTGGTTACTGGAGATACGCGCCGGGGTTTATGTCGGGGATATCTCGCATAAAATCAGGGAGATGATTTGGGAACAAATCACAGAACAGACCGAAGATGGCAATGCAGTTATGGCCTGGAAAACCAACACTGAATCAGGCTTTGATTTCCAGACCTTTGGGGAAAACAGAAGGGAACCGATAGATTTTGATGGCCTTCGTTTAGTGAAGTTTAAACCACTTGCTGAGGAGTAGCTTAGAGAGATTAAAAACTACTTAAAGTCGGTAGAATTTATACCGGCAATAAAGAAGATTAAAAACAATTGGTTATATTTAGG # Right flank : CATCCATTTCAGTTTGATAAACAAAGAGTTTAGAGGTCTCCGTAGGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGGTCTCCGTAGGTACGGAGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGGTCTCCGTAGGTACGGAGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 102-557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRJV01000081.1 Xenorhabdus nematophila strain C2-3 Contig081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102 29 96.6 32 ............................A ACATGGCACACATAAAGGCATCAATTGACACC 163 29 100.0 32 ............................. ACTTTTATCAAGATCTTCTAATTGACCAAGTA 224 29 100.0 32 ............................. CCGTCCATTTTCTGCATACACTGAATAAATGG 285 29 100.0 32 ............................. TTTTTTCAAGTGGATTATCATCGTACTTATGG 346 29 100.0 32 ............................. CATCATTCCAAATTCATGCAGAAAAGCATTCA 407 29 100.0 32 ............................. GTATCGTGAATGTTCACTTTCGCTTGTACCAT 468 29 100.0 32 ............................. CAAAAGAGCGGTTCGCCGATGCTATTATCAAT 529 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : ATAAACCGTGTACGCAATTGAACAAGATGGGTTGAAACRGGTGTTCCCCGTAAGTACGGGGATAAACCAAGAGGAGAAATCTCCTCTTTAGAATTATACGCG # Right flank : GGAACGCCTGAATATCGTCAGCGCAGGAGACTCGTGAAGCGATGATACCACGAAAAAAAAGAAGTGACACGCCTTATATCGCCGCCCGCATTGGGCGACAGTTTTTGCTACAAAAAGAAAAAGCCCCGAGTTCAAAACTCGGGGCTTATAAATTCTGGCGGTGCGGACGGGACTCGAACCCGCGACCCCCGGCGTGACAGGCCGGTATTCTAACCAACTGAACTACCGCACCGCGTGGTGTTCTGGTTGAGAACGGGACGGATGATACGAGCTACAGTAAAATCCGTCAATCGCTTTTTATAACAAAATGGTTTGTTTGCGCAGTTTTTCGCCTCAATAATACATTTCCTTCCATTTTGTGACTATTTTGTTAGTGAATCTGTTCGGATTTCGGACGCCAAAGGCAACTTCCTCCTTTCTTCTCCACTAAGTCCAGGCGGGATTCATGCTGGGTTAATTCTTCATCAGATGCGTAAATCACTTTCAACCCAACCTGAGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55-632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRJV01000057.1 Xenorhabdus nematophila strain C2-3 Contig057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55 29 100.0 32 ............................. GTTGTTCGCCGTTCTCGTGCCGGATGATGGAC 116 29 100.0 32 ............................. AAAATGTATGGGAATTGGCTTATGTTTTATTA 177 29 100.0 32 ............................. CCCGATTGTCATTCCTGCAACAGCATCCCTTA 238 29 100.0 32 ............................. TACAAAACAGCGTCATGGGGTGAAGTAAAAGC 299 29 100.0 32 ............................. TTCTTTCAGGCATTCCCTCGCCACCTGTCTCC 360 29 100.0 32 ............................. ATAACCGGATGCCATCCCCCCGCCACCTCTGG 421 29 93.1 32 ............CC............... AACGCTTCACATTGACGGAAATCAGATATTGC 482 29 93.1 32 ............CC............... GGCTGTAGGTAAAATCACCGACCACCATGATC 543 29 93.1 32 ............CC............... GATATTATCGACGCAGCGAATGATTTAACCGA 604 29 93.1 0 ...........G.A............... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.2 32 GAGGTCTCCGTAGGTACGGAGATAAACCG # Left flank : CCGTAGGTACGGAGATAAACCGCATCCATTTCAGTTTGATAAACAAAGAGTTTAG # Right flank : GTGGTTTATGACACAACAAGATGAAGAAGATATGATTCCCCCGTAAATACGGGGAAATCCCCCTCAACTTGTCACACAAAAAAGCATAAGCATAAGCATAAGCATAATTACTTATTTGAAAAGATAACCGAAATAACATAAAAATCACCAAAAAGTATTTTGGTAGTCATTTATTTTGATTTAGTCAATATAAAGACAAAAATAAAAATTCATCTGAGCTAAATTTATTTTTTACAATCAGAATATATCGAGATAAAAAGTAACATCAAAATAATGACAGTATAAAATGGTGATATTTATTAACATATAAGGAAAATAAAACGCATTTTTTTGATGATAAAACCAACGAAAACTCTAAATTTTGCCACAAACGCTTCCCAAGCATCATTCGTTAATGATTGTCAAAAATACCTATGCTAACCTACGCCGCTTTTCATCCCCCTTGCTGTTGATTTTATAAGCAATTATCTGTCGGAAATAGGAAGCGAATTAACTTATGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGGTCTCCGTAGGTACGGAGATAAACCG # Alternate repeat : GAGGTCTCCGTACCTACGGAGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGGTCTCCGTAGGTACGGAGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //