Array 1 481102-481605 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035492.1 Paenibacillus protaetiae strain FW100M-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 481102 32 100.0 36 ................................ TTCGTAGGGGCGCTCATCTACGCATACAACGCTTGA 481170 32 100.0 34 ................................ AAGGCTTGAACGCGAGGCGTGCCCACGTAGTTCA 481236 32 100.0 34 ................................ CCTTTAAAACGCCCCAGCTCTCCGACGTCTTAAC 481302 32 100.0 38 ................................ CCGGTTTTTATTTTACAAGCATATAGCGCCTATATATC 481372 32 100.0 36 ................................ TGCAGGAGCATTATACCCCTGCGCGAATATGGCGGC 481440 32 100.0 35 ................................ CTCCAGCTGCTCCCGGGCAGCGCGCTCGTTGTGGA 481507 32 100.0 36 ................................ GCGACTGTCGTAGGCGCATAAACGAATGGCAGGGCA 481575 31 87.5 0 ...T......-A...........A........ | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 98.4 36 GTCGCACCTCGCTGAGGTGCGTGGATTGAAAT # Left flank : TAAATATGCGAGACGTACTGGTGGACAACTGTTCTCTCTCCTCAAAAAGATTCATTTACCAAATATTTGTAGTATTCGGCGCTTTCACAGTAAAATCCTTCCATAATTTATATCAGTTAAAGCTATAATATTTGAGGCTGCATGCAGCGACTGCCGATTGATGTTATGCTAGCGTGTTCTCTGTGCATCCGGCTTTTTCTCTTCTTGAAATCAGTTGCTGCACAAAAGAGATTTAACCTTACTAATTTGACGGCATTTTCATGATACAGCAAAACTCGCAGTTTTTATTTTTGGATAAACCTTGGTGAACTTGAGCAAAGTGCGAGTCGGGGTGCGAGTAAGAAGTGCACATGTTTTTCTTGGGACATTCGCACCATTTTTGTGGTATGATTTTCCTTGAAACGAATCGCGGAAATACACTATTTTTCGTTTTGTGAAAATTTCTGTCAAAGTTCTGATCTTTTTTATCAATTTCGAACGGTTTTTAGCATGAAATCGGT # Right flank : TCTGCCAAAAAATATAGTGTAATTCTAATAGACTTCCTATATCAAAGGAGACAGGTGAGGATGAAGGACTATATTGCGCATATTCGTTCAAGTGACGGCGAGATTCAAACAGTTGAAGAGCATCTACTGGGAGTGAAACAATTAGCCGAATCGTATGGGGAGAAGCTGGGTGTTAAGCATATAGCCGGACTGGCTGGTATGTTGCACGACATGGGGAAATATACGAATACTTTCAGGACATATATTCTGGAAGCGGTGAAGAATCCGAATAATCCTCCCAAACGGGGGAGTGTTGATCATTCGACTGCCGGCGGAAAATTACTCTATGAGAAGTTTCATCAGGGGAAGTTTACGCAGTTCCATGGGGTTCTTGCCGAGATCGTAGGCAATGCCATCATATCCCATCACTCTTATTTGCATGATTTCCTCAGTACTGATCTGGAAACCCCCTATTTGAACCGTATGCGTAAAACGGAACCGGAGCTGCCGCAATATGAGAT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGCTGAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 490079-491867 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035492.1 Paenibacillus protaetiae strain FW100M-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 490079 32 100.0 36 ................................ CGGATCGTGACCGCCTTGTCGTGATCGACGAGGACG 490147 32 100.0 35 ................................ TTCTGGTTTTGATACCATGTATGATACCGAAACCC 490214 32 100.0 34 ................................ GTCCGGAGCAGCATCCAATAGCGCCGGCATAAAC 490280 32 100.0 35 ................................ ACCTTTATTTCCAATCTGTTCGGCGGTTTGTTTAA 490347 32 100.0 35 ................................ TATTTTGTCGTTAAGCTGATCGACAATTTCTTTCA 490414 32 100.0 36 ................................ CCGGGTACATCATCTACATTATAAAATTTTATACCA 490482 32 100.0 36 ................................ ATTCAAATCCACCGCGCCACCGATCCCGGCGACAAC 490550 32 100.0 34 ................................ ATATCGAAGTGCCTGAACTCAACATTAACCATGA 490616 32 100.0 38 ................................ TCTTCCCTCTTCTCTGATGCCGGCTACTTGGCCAGTGA 490686 32 100.0 35 ................................ TATGTCCATAAGCGCCGGATCCCGAAAGCCGTATG 490753 32 100.0 35 ................................ AACCTGGACGATCCAGACGAAACGGACGATTTGGC 490820 32 100.0 34 ................................ TTACTGGCTTGAATTTGTTGGCCAAGCCTTTAGG 490886 32 100.0 33 ................................ TGCAAAAAGAACTGTATGCTCCCTCAAATCTGA 490951 32 100.0 33 ................................ TAATCGAATACCGCTTCAAAAAAACGCCACGCT 491016 32 100.0 37 ................................ TTTATGAGTGAATTGGAACAAATTGCTGACGAAAGAG 491085 32 100.0 35 ................................ AGCATCTTGGATGAAAGAGTGAACGAAAGAAAAAT 491152 32 100.0 33 ................................ AAGTCAATGCTGCTGTACGTTTCAAGGTCGATT 491217 32 100.0 34 ................................ CTTGTACCGTGATACGGGCATAGATCGGTACAGA 491283 32 100.0 37 ................................ TTCTGATACGGCCTGCGCCACGTTTTCCATGTATTCC 491352 32 100.0 39 ................................ CAGAAGCCGCCACAAGATGGCGGCGAGGGGATTAATATC 491423 32 100.0 40 ................................ TCGTCATTCAGTCTTCTGGATTTGTTACCGTGATATCAGA 491495 32 100.0 35 ................................ TTGTGGGAAAAATGCATCTCCAATCCAACTGAACC 491562 32 100.0 37 ................................ CCTTCTTACCGGACGCGCGGAGAAACAGGCATATGCC 491631 32 100.0 37 ................................ CCGGCGCTTGATTTTTGTAGCTGGAAAAGCAAAGGCG 491700 32 100.0 36 ................................ TGCACCTGAATCAGCCGTCCTGCCCAGCGCCATGTA 491768 32 100.0 36 ................................ CGTACGTGATGCCAGTACGCAGTCAGGTAAGCCAAG 491836 31 90.6 0 ..........A...........A..-...... | A [491856] ========== ====== ====== ====== ================================ ======================================== ================== 27 32 99.7 36 GTCGCACCTCGCTGAGGTGCGTGGATTGAAAT # Left flank : TGCTGGTGTTAGTCACCTATGATGTAAGTACACTAAGCAGCGCAGGTCAACGCAGACTAAGACTGGCATCGAAACTGTGCCAAAGTTACGGTCAACGTGTTCAGAACTCTGTATTCGAATGCGTAGTGGATGCAGCCCAGCTTACTTTATTAAAAATTAAGCTAGGTGAAATTATTAACCCGGACGAAGACAGTTTACGTATCTATCAGCTTGGCAACCATTACAAGAACAAGGTTGAACATATTGGTGTAAAGCCATCATTAGACTTGGAAGGGCCGCTAATTATGTGATGGAAAGCGAGTCGTTGGGGGTGCGAATTAGTGGTGCGAATGAGAAGCGAACATCGTTTTCCTAGGGGATTCGCACCACATTTTTTTTGAGAATCCTCCTATCAAGCTTCTACAATGTGATAGAATGATCGTTAATATCATTATTTGAAAATTTATTTCATAATTTTGACTTTAAAAAATATATTTATTCTCTTTTTGCGTAAAATCGCA # Right flank : TAAAGATGATTTTGCATAAGCGCCCGAGCGCTTTTTTTGTTTAGCTCAAATAAGAAATTTGTCGAAAAATATTATTTCCCACTTGCCGCGGTTCCGGCCTATAGTGTACTATAAGCTTTATATTTGAAGAGGGCGGCTTTGGCCGCTTGCGTTAACATCCCGCTTGTGCATGAAGCAAAGGCGGGCATATAACTGCTCATATAATTATGGGAATAAGGCCCATTAGTTTCTACCGGATGACCATTGCAATTATCCGACTATGAGCGAGACCGCAATCCGCAGAAAGAACGTCTGCTTCCGGCTTTGGCAGGGCCGTCAGACCTTTGATGCGGCGCGGTGCTCCGGTCATGGTTTTAAAATCCGTAGGGACAAACTTCGCTTAAGCGCAGGCTTAAGAGGTTTGTCCTTTTTTAATTCCGTATCGGCGAATGACAAAGCTGCCATTGCCTGGTTGTCAGGGAAGCAAGCAGCAGACGCTGCATGAAATCAATTAAGGAGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGCTGAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 778008-779046 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035492.1 Paenibacillus protaetiae strain FW100M-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================ ================== 778008 33 100.0 37 ................................. AAAGCTAAGCGTATTTTTACAAACCAAGATAAAAGGG 778078 33 100.0 36 ................................. ATATACTGCTGCCATTTATCTGCGTCATGGTGCGGG 778147 33 100.0 35 ................................. GTCTCTTTCGTGAGTAAACATTTGTCCCGGAGAAA 778215 33 100.0 36 ................................. TCACGGCGCTCGCCGTTCGTGCCAACCTTGCGCTGC 778284 33 100.0 36 ................................. GCTTGGTGTAAGTCGTAAACGATGACGCAATAATTA 778353 33 100.0 36 ................................. CCTTCTCCGTTGCTCCCTAAATGATTCAGCCAAATC 778422 33 100.0 37 ................................. AGAAAATGGATTTTTACCAGTCATTATTTATACATGG 778492 33 100.0 34 ................................. AAAATGGGTTGCCAGATAATAAAGACCCGCCAAG 778559 33 100.0 34 ................................. TTCCGGGTGTCGCGGCCAGGCGGACACGTCCTGC 778626 33 100.0 36 ................................. CATCCGAAGGCAGCCGCTCGATTGAAAGGCGTAAAG 778695 33 100.0 37 ................................. CTCATAACCATCCGGTATGTCCAACCCAATATCATCA 778765 33 100.0 34 ................................. TCTTTTGTATTCAATGACTTGTTCGACGCGCAAA 778832 33 100.0 35 ................................. GATCTTTTTATGACGTTGAAAAAGGAGACTTGGGA 778900 33 100.0 80 ................................. TTGACGGCCACGACGGCCGCCGCAGCGCGAGCCTGGATTGAAATTCGAAAGTGGAGATCATACTGCGAATCCTGTCACGG 779013 33 78.8 0 ..................AAG..TTG.C..... | C [779043] ========== ====== ====== ====== ================================= ================================================================================ ================== 15 33 98.6 39 GTCGCACTCCGTATGGAGTGTGTGGATTGAAAT # Left flank : GCCATTTATGGAGCAGAACTGGTTGAACGAATTTATGGCAAGGGAATTGGACGCTTACTTGCCTACAGCATTGCCGGTCATCATACCGGACTCCCGGATTGGTCCAGCATCGAAGGGGCTGGACCAGCCTCATTGCAGTTTAGAAAATCGCAAGTCAATGATCTGGATCTTGAACAGATCGATCCCTCGTTTATTGCAAAGCTTCAGGAGTTCATGCCTCTGCAACCGCCGTGGAAGTTTAAAGACGGAAGGTGATGCCCTGCTTTTTCAAGAAGTCAAAGTTGAGCATATAGGTGTCAAAACTGTTTATGACATGGAAGTGCGAACGTGAAGCTCACATATTTTTTCTGGGGGGTTCGCACCATGAATTTTGTCGTGTTAACCCGATTTTCTTGCTTTGTTGAAGAAATTAAGTGGTGACTTATCCTTTGAATAGATAGATAATTATGGAATTAGGTATGATTAATCTCGATAGGTGATCAATCGCACCTAATTTCGCT # Right flank : TACAGAGCCATACGTAGATTAGAAAACCTCTACGAAACGTTATATTATCGTTATGAGTCGGATAAAACGTTTACGTACAAAAAAATCATGATGAATTAAAAAGGGAATCAGAATATATACACCATCACCGCCTTTAAAAGAGGCGGTTTGTTGTTTCATCCCCAAAACGTCACCTTGCACTGAAAAATCGCAGCTGTAATAGATGTGTTTTTTAATTGCTGAAAATCCCTTTAGAAACAGTATCTTATTATTAAGTATCAAACAAAAAATCGGGCATCCCTTTCGGGACGCCCTTTCATGGGAGAGGAGAAACCGGACGAAGAGCTTATGGGGAAACGTAAGTCTTCTCCGCGGTTGTCTACGGCATCTTTCGAAGCCGATGATTGTATTTTTACCGAATTGCAACTGATTATACCTGCGGCGGAAAAAATTTGTCCCTATATGGAAAAGTTTCATCCCGGCCGGCGAAGAATGCCAAGCCCAATCGTCGCAATAGCGGC # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //