Array 1 38-7273 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFD01000084.1 Candidatus Oscillochloris fontis strain Chuk17 NODE_524, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 38 37 100.0 38 ..................................... CAGGTAGTACTGTGTCGTGTTCATGCCCCAAACATAGC 113 37 100.0 38 ..................................... TGGTGTCATCGTTTCACTTTTCGCAATAAGAGGGAGAA 188 37 100.0 37 ..................................... TCCGCACGATCACGAGAATCGAGGGGATGGTTATCGG 262 37 100.0 37 ..................................... ACAACCGATGCGCTGACAACCGACGATGTGCTGCGTT 336 37 100.0 34 ..................................... GAGCTACAAGGCTTCGAGCCGGTGGAAGTGCCGG 407 37 100.0 35 ..................................... GGTAGTCACCTCAATCCCCCCGCTGCGCGAAAAAT 479 37 100.0 36 ..................................... ACCGTCCCATTAATCGCAAACGGCAACGTCGCAACC 552 37 100.0 36 ..................................... AAAGCGTGGGTAGAGGCCGTTCCAAAAGTGAACAGA 625 37 100.0 37 ..................................... ATTAAAGATCTGGGTGAAATGGTGCAATCCGGTTGGG 699 37 100.0 34 ..................................... CTCGAAGCTCAGATCAGTACATAAGAGTGTACAA 770 37 100.0 35 ..................................... TATAACGCAAGCCATACACCGTCAACTTCACACGG 842 37 100.0 36 ..................................... TGGGGAGTAAGGAGTAGGATATGTCTAAGCGTGATG 915 37 100.0 36 ..................................... CAGGAGGTCAACGAACGCCTGGATAAGATCCAGAGC 988 37 100.0 35 ..................................... TAATTAGGGACAACAGCGGCCATAACCAAGCCCTC 1060 37 100.0 36 ..................................... TTCTGAAATTCGGAGAGGCAACTTACGTGACTAGTG 1133 37 100.0 36 ..................................... TATTCTGGGAATGTTACGCGGTTGCGGCACCTTTTG 1206 37 100.0 34 ..................................... CAGGTCTCGCGCATCCTGTGGAACTTGGAGCAGG 1277 37 100.0 36 ..................................... TATAATGAACCCGTTTAACGCCCGCATTAAAAGCGA 1350 37 100.0 37 ..................................... AGAAAGCAATGCAGGATAGCCCAGAGCCAGAGGAGGT 1424 37 100.0 37 ..................................... AATTTTCGATAGAGATTTGTAACACGCCTACCCCCAC 1498 37 100.0 36 ..................................... CCGCTCTATTTGCCACCGGGGTATGATGTGCAGGGG 1571 37 100.0 35 ..................................... CCGCGAATGATATGGATAGCCGGGTAATCATTGAT 1643 37 100.0 36 ..................................... GCCTTCGGACACATTACAGAATCGGATGTGCAACAG 1716 37 100.0 36 ..................................... TCTACTCGGCTCATGCGGATCGCTGCCGGGAATGGC 1789 37 100.0 37 ..................................... AAGCCGTGGGCAAAATGATCGGGGCTGCTCTCCAGAC 1863 37 100.0 38 ..................................... GCTCCTGATGTGCGTGCGGCCAGAGCACCCGCCAATTG 1938 37 100.0 37 ..................................... CTGGGCATGGGCGCGGTACTGGTGGGGGCGTTGGGGT 2012 37 100.0 36 ..................................... AGGCATGAAGCACTACACCCACACCTTTACCATCGT 2085 37 100.0 37 ..................................... CACGCCCTGCGGCACACCTTCGCGCGCTCGCTGGAAG 2159 37 100.0 38 ..................................... GCGCCGTCTGTCAATAGCCCCAACATCTCACGCGGGGT 2234 37 100.0 43 ..................................... GAGCAAGCTGCTGCTGCAGCAAGACGATCCGCAGGGCGATGGC 2314 37 100.0 37 ..................................... ACTGTGATTGAGACGGAGGCTGACCGGCGCTTGGCCG 2388 37 100.0 36 ..................................... CAACTCCCGAAGGGATCCCCCTGTCACTCGTTTCGC 2461 37 100.0 36 ..................................... TATTTCGCTCCCAGTGGCCACAGGATTGCGCCTACG 2534 37 100.0 38 ..................................... TGCGGCGAACGGCCATTCTCACAAAAATCATGGGGCGG 2609 37 100.0 36 ..................................... GTGGTAGCATCCCGTTGCTGTATCGCCAGTACGTCC 2682 37 100.0 40 ..................................... GGGTTTGCGAGTGACGGTTGTGAGGATGGGGCGTTGTGTG 2759 37 100.0 35 ..................................... ACGGCAACATCCGGCGTGACATCCGGTGTAAACAG 2831 37 100.0 37 ..................................... AGCGCCTATGGAGTTTAGTAAAGAATGAATACGCAGG 2905 37 100.0 37 ..................................... TTGCGGGCTTGGGCGATGCGTTGAGCAAGCTCCATCA 2979 37 100.0 36 ..................................... ACGCGCGATCATCGCCTCAAGGCGGTGCTGCGCCTC 3052 37 100.0 36 ..................................... CGTGATCCTGATACTGGGCGGTACGCCCTGAGCGCG 3125 37 100.0 42 ..................................... GTAATTGCTCCGGCGTGGCCGGGGTCTCGGCAAGGCTCAGGC 3204 37 100.0 38 ..................................... CCGGCCAATGATGCGATCTTGGGCTTTGTCAACAATAT 3279 37 100.0 36 ..................................... TAGGGCATAGCAAAGCCCCAAACCGAGGTTGGGGAG 3352 37 100.0 35 ..................................... CAATTGCGCTACACTGAGCAGACGAACCGGAAGAA 3424 37 100.0 35 ..................................... AGCTTTGTCCCCTTGGCGTAGTTGATGCGCTCGAC 3496 37 100.0 38 ..................................... ACTGTTGCGCTGCGTGCGCTCTTCGATCTGATACTCGG 3571 37 100.0 40 ..................................... TGCTCAAACAGGCTCGGATGGGCGATCTGAATCACGCCGA 3648 37 100.0 35 ..................................... TTACCAGCGGCATCCCGCTCGTGGCCGATAGTGTG 3720 37 100.0 37 ..................................... AAGATCGGGTGCTACCCAATCTACCTGCGGCGCAGGG 3794 37 100.0 37 ..................................... TCCTCATTGACTAATTCAAACTCAGGATACCAGTCAG 3868 37 100.0 37 ..................................... ATGACGATCAGAGTATCCGCGATACGTGGCGCTCGGC 3942 37 100.0 36 ..................................... TACCGCCAGCAGTTGCGAGAGCCGTGCGGGTGATGG 4015 37 100.0 35 ..................................... TCATCGGCCAAAAACTCTTGACTATTGACCGTCCC 4087 37 100.0 35 ..................................... TAGTGTATATCGTAATCGGTATAGATGAATGGAGT 4159 37 100.0 36 ..................................... CTGCGGGTTGAGACCGGGCGCACCTATACGGCCAGT 4232 37 100.0 34 ..................................... ATCATCCTGATAAGTTCCGACTTGTCGAGCATCT 4303 37 100.0 37 ..................................... GTTGCCATCACGGGGATCATCCCGTTCTAGGAGCCTG 4377 37 100.0 34 ..................................... TGCGAGACCGGCGGCGGCGAGAAACTGACTCCGC 4448 37 100.0 37 ..................................... TACTGCTCCGAGCGGTCGCCCCGCTCGCGTCTGGGAT 4522 37 100.0 39 ..................................... GGCTATCTCGTGTTGGCGAACGGCGAAATCGCAACGTGC 4598 37 100.0 36 ..................................... TGGTAGATAGTCATCTATTTGCCCCTGAACTATTTG 4671 37 100.0 35 ..................................... CAAGCACCGTACCAATCACGACATAGACAAACGGC 4743 37 100.0 35 ..................................... ACGCCCTTCGGCGCGGAGATTATCAACAATCTCCG 4815 37 100.0 35 ..................................... TCATAGCGGCCATACGAGCGCCGCACGGTCACAAT 4887 37 100.0 36 ..................................... ACACCAGAAACCCCCGTATGCCAGTTTATGGAGGGG 4960 37 100.0 36 ..................................... ATCATGATGTGGGTCTCATCGGCGACAGTCGCCACC 5033 37 100.0 36 ..................................... AGCTTCGAGACGAGGAAGTCGCCGCCCTTGTACTCG 5106 37 100.0 36 ..................................... TCTCCTGGACTACGGTGGATGGTGCGACATGGTGAC 5179 37 100.0 37 ..................................... TCTCCGAGGTCGGCGCGGAGCCAGTCCAGATCGGTGG 5253 37 100.0 35 ..................................... TCTCTGGGAAGTGGGCGAACTCGACGCCACCACGC 5325 37 100.0 36 ..................................... CATCCGTGCGCCGCGCTGTCCCTCCCGAATCCACGG 5398 37 100.0 37 ..................................... CGAGGTGTGCTGCATCGTCGCGATTCGCGACGGAAAA 5472 37 100.0 36 ..................................... AATCAAGTTGCCAGCAGACCCAAGAGCAGTGCATCT 5545 37 100.0 36 ..................................... GCACATCCTGGTACTCGTAGCCGACACCGTAACCAA 5618 37 100.0 34 ..................................... AGACTCCTACCTGTACTGCGGCCCAATGGGTAAC 5689 37 100.0 36 ..................................... TCTCGAATAGGTTGTTGAGATGCCGAAGCGTACCGA 5762 37 100.0 36 ..................................... ATCTTCTCGGTGATCGGCAGGCTCCATTTGAGCCGA 5835 37 100.0 35 ..................................... ATCTTGGTGTTGTCGTCGAGGTCGCGCTTGACGCG 5907 37 100.0 34 ..................................... CTGGATCTCAGAGCGGAGCGCCTGCATCTGCGTA 5978 37 100.0 38 ..................................... TTCTCGATGAAGATGATAAGAATGTAATGCCAGATTGG 6053 37 100.0 39 ..................................... TCAATCTTAGCACAAGGATTGATACTGTTATGTTTCAAT 6129 37 100.0 36 ..................................... CTAAGTAGTGGAGACATCTACCGAGCAGATCGTGTG 6202 37 100.0 37 ..................................... TGCTTCGTTATGCGGCTCCAGACAATCGCACCACGCT 6276 37 100.0 35 ..................................... CTGGTCAACCGTCTCTCCGGGGCGAGCCTTGAGGA 6348 37 100.0 37 ..................................... ATGGCGGTAGGAGTTACCGTCTATAACATGGATCACT 6422 37 100.0 36 ..................................... AGATCGCGGGCGGGTAGGCCAATGACCCACCCATTG 6495 37 100.0 36 ..................................... CGATTGTCTGGAGCCGCGCTACCAAAAAGGCGCGGA 6568 37 100.0 37 ..................................... ATGGCCATGGCGAGGCGCAGCGCGACCCACGCACCGG 6642 37 100.0 37 ..................................... CTCTCGGCATTTAACAGCGGGGCATAGCATGACCAAC 6716 37 100.0 37 ..................................... GGTGAGCATGTCGGCGGCCATCGCGCCGGTGACGATG 6790 37 100.0 37 ..................................... CGACTCCCTCACCCGTCGCCAGACCCGTAACCGCCGA 6864 37 100.0 39 ..................................... CTGGTCAACCGTCTCTCCGGGGCGAGCCTTGAGGATCGT 6940 37 100.0 38 ..................................... TGAGCGCCCGTGGCGCACCCAGCTTCTTCTTCGGCCAG 7015 37 100.0 38 ..................................... CCACAGGATGCGCGAAACCTGCACCGGCACCACCTCCA 7090 37 100.0 36 ..................................... TCGGTGTGAAAGCCTAGCAGGAGTGGCATCGCTCGC 7163 37 100.0 37 ..................................... ACAAATAGGGGGTTGCTGTAGCCGGTACGGGGGTAGA 7237 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 99 37 100.0 37 GTTCCAAAAGCCCCAAATCCGCCCGGCGGATTGAAAC # Left flank : GGCTACGCGGGCTGCGCTCCCTCGCGCTCGATCCGCTG # Right flank : GGCTACGCGGGCTGCGCTCCCTCGCGCTCGATCCGCTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAAAAGCCCCAAATCCGCCCGGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 38-9258 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFD01000059.1 Candidatus Oscillochloris fontis strain Chuk17 NODE_143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 38 37 100.0 40 ..................................... CAGAAGCCTATCCAATTCCGATCCACCCCATGCCCATAAA 115 37 100.0 35 ..................................... TCCTTCACAATGAGGGCATTCGTTCGATTAGGATG 187 37 100.0 35 ..................................... ACGTCACTACGTTACCTACACGTTCTTCAATGAGA 259 37 100.0 36 ..................................... GCCAAGGAGTATGAGTAGTGTGGCGCAAGCGGCGCG 332 37 100.0 39 ..................................... CTTTTCCTAGTGTGTGCATCATACTGGTGCTATTTCGCA 408 37 100.0 36 ..................................... AGATACTTTTTTACTGTCCGTCGTAAGCGATGATCG 481 37 100.0 42 ..................................... TTCGCAGCGGAGTTACTACGGTTTGCTGTAGCATTAAATGTG 560 37 100.0 39 ..................................... AGCATGATCATGCTCCTTGCCCCTTTGGGGCTACTAAAG 636 37 100.0 36 ..................................... AGTTTTCGATTGAGTTTGGGGGTTGCGTTCCTACCC 709 37 100.0 39 ..................................... CCCTCCTGCTGCCGAATCATCGAAAGAGGCTAAGGATGT 785 37 100.0 35 ..................................... TTGGTCAGTTCGCTCATCCCGACGTTCCAGATGTA 857 37 100.0 37 ..................................... TCACCAGGCGCAAACGAGACCACGCCACTCATAAAGG 931 37 100.0 34 ..................................... GCCGAATTCGCGTGCGGCGCTAACTTTTTGCCGA 1002 37 100.0 37 ..................................... CGTCTGTGAGTAAGATTGCTCCACTTGCCAAGGAGTA 1076 37 100.0 35 ..................................... AAACACTCACCGCTTGCAGTAGTACAACCTGTCAA 1148 37 100.0 36 ..................................... TTCCTTCTCTGTTGCCGATGGACTATTCCATCTGCG 1221 37 100.0 36 ..................................... CATCCTTCGGTTCATCCTTTACGGGAAAAAGACAAT 1294 37 100.0 34 ..................................... CAGAGATGCAAGCAAGGCGAAGAATAAACGCCCA 1365 37 100.0 38 ..................................... ATCTGCGTTTGCAGCCCGCCAAAGCTGCTGGACATCCA 1440 37 100.0 38 ..................................... CTGGGATAACAAAGCACTGGTCGAGCCAACCAGCATCG 1515 37 100.0 37 ..................................... TCAGGGGCAATCTATGGGAATCTCGGAGGCTACCGCG 1589 37 100.0 36 ..................................... GACCAACCAGGACGGCGACGAACTGACTATCCGGGA 1662 37 100.0 39 ..................................... CGTACAATTGACAGGCAAAGCCCCACCAGCCGCCATGAA 1738 37 100.0 37 ..................................... TGTATATCGGAAGGGTGTGCGGAAGCAAGTCGAAGAG 1812 37 100.0 35 ..................................... TTTATGTGCGCCCCGTTATTAGTGGCGCGTATCGG 1884 37 100.0 37 ..................................... ACCGTATACATCCTTAACTCCTTGTCGCTTCGTGTGG 1958 37 100.0 38 ..................................... ACAACTGTTAGGGGGGGGGGGATTGTAATATGCCTAAA 2033 37 100.0 37 ..................................... TAACAGAATAATGTACTCACATAGCGCGGGGAGTTAC 2107 37 100.0 36 ..................................... AGGCTCAGTACCTTACCACCTTCGTACCTCACCATT 2180 37 100.0 34 ..................................... TCGAGCAAGCATACGACAAACACTTCGACGATGA 2251 37 100.0 38 ..................................... GCAGAGGCGCAAGCGTTTGCGGATGCGCTAGAGGGCGC 2326 37 100.0 39 ..................................... GGGGATTTTGCAGCATTGATATGTGATTTCTATGATGGG 2402 37 100.0 36 ..................................... TAGATACCGACATCTTCCGCATTCCTAATGACAATT 2475 37 100.0 35 ..................................... TATGCGTACATCGCGTGATATGTCACCAAACAAGA 2547 37 100.0 36 ..................................... AAGGATGTATACGGTTACGGTGCAATCAATAGCCGA 2620 37 100.0 35 ..................................... TGACCTGTGACAGCGCTGAAAGCACACAGCCTGAA 2692 37 100.0 37 ..................................... AGTTGTTGTGCGCAAGAAGCGGCGCAGGGTAGCGCCA 2766 37 100.0 36 ..................................... GTAGTATTCTCTAGATACACTCTCAGGAGGCTTCCA 2839 37 100.0 35 ..................................... AAAGCATGCCACAAGGTAGGCAAGACCCATCTGGC 2911 37 100.0 37 ..................................... GTGTATTCTCGCCCTTGCGGGCGAATTGCACTACTAC 2985 37 100.0 38 ..................................... TGGTAGTTGTAGTCAACAGCTAACTTGCTACCATGATG 3060 37 100.0 36 ..................................... GCAATTGCCCCCTAATACACGTTGGTGTAGTAGTGG 3133 37 100.0 34 ..................................... TGACCTGTGACAGCGCTGAAAGCCTGACAGCCGC 3204 37 100.0 35 ..................................... TGCGACATCGTTGGGCGATCTGATTTGCAGATTAT 3276 37 100.0 38 ..................................... ATTGACACTGAATACCATACCGAGTATGTATCTTTTGA 3351 37 100.0 37 ..................................... ACTGAAATGGTGAGGTACGAAGGTGGTAAGGTACTAA 3425 37 100.0 37 ..................................... AGGCGAATAACCGTAGTTGCCTAGCAGGTAGTTGCAA 3499 37 100.0 40 ..................................... ATATAGCCCAATACGATGAAACGGCAAAGATTTTTGCCAA 3576 37 100.0 36 ..................................... AGGCGAATAACCGTAGTTGCCTAGCAGGTAGTTGCA 3649 37 100.0 34 ..................................... GACAAGACAGCCCCATTGGGCTGTGATGGGTTCG 3720 37 100.0 36 ..................................... ATCTTGCCGCGCCCGGTGCTCGCGGTGCCGCTATCG 3793 37 100.0 38 ..................................... CTCATCTTCTGTGGTATCCTTTCCTCGCTTAGGGAGGT 3868 37 100.0 37 ..................................... CTCCGCGCCACTCGGCAGAATCGAGCGCGTGATCAGG 3942 37 100.0 37 ..................................... ATACGTGGGAACCTAACCATATCCGTGAATTTATGCT 4016 37 100.0 35 ..................................... CGACCAACGCAGAGCAAGGGCTGACCAGCAGGCAC 4088 37 100.0 33 ..................................... CTTTTCGGCCTAGCACACGCGGGCTACCGCGTG 4158 37 100.0 37 ..................................... CCTGATCAATGCAGAGGCCATGGGTCTCCACAGCGAA 4232 37 100.0 37 ..................................... TTCGGACGCTTCCGCTGTCTCGCCTGTGGACGGTTTG 4306 37 100.0 39 ..................................... AGGTCGGTGTGGGTACGGGTAATGTGCGGAGGGCGATGG 4382 37 100.0 35 ..................................... CTCGCAGTTGGGGCATGGGATAGCCACACTTCGAG 4454 37 100.0 35 ..................................... TACGCAATTGTGCCAGCACGCCCCAGACGGCCACG 4526 37 100.0 35 ..................................... TGCTTGTCGCACGCGGCCAGGAGCTTGAGGATGGT 4598 37 100.0 37 ..................................... TCCGCGATTTGCTTATGGATGTGCGCAGCATGCCCCG 4672 37 100.0 36 ..................................... TTACCGCCGAGCGGGCAGACGGCGCACCGGTGATCA 4745 37 100.0 38 ..................................... CATGGCAGACTAGCCCCGGTACTCGCGGCTCTTCATAG 4820 37 100.0 38 ..................................... TGCCCCTGTTTGCTGGTGGAACGCCTGCATTCTACGGG 4895 37 100.0 36 ..................................... CATTCTGCGCCATGGAGCCGAGCGGCTGATGGCGCT 4968 37 100.0 36 ..................................... GGTATTTACCGCATTACAAAGCCAAAAATACCCTTG 5041 37 100.0 37 ..................................... CATAATGATTATAGTAGTTTGTGCGACACTGCACATA 5115 37 100.0 37 ..................................... TTAGCTTCTGGTGCAGCAGAGGATCGCTTTGGTAGAG 5189 37 100.0 35 ..................................... TCTTGGGCAACACCGCCATAGATATTTTCTGATAG 5261 37 100.0 35 ..................................... TAGATACCAACATCTTCTGCATTCCTAATAACAAT 5333 37 100.0 37 ..................................... TATGAAAAAGGCTTTCAGCAGAATGGCTCCTAGAAAG 5407 37 100.0 37 ..................................... CACATCCGCACAAAGGCACACGCTCAATGGCTATTCG 5481 37 100.0 36 ..................................... TAGAAACCAAAGGTATTCTAAAAATACTTAACTTTA 5554 37 100.0 37 ..................................... TCGAAGAAATATGATAACTGTGAGGGTGCGTTGTGGA 5628 37 100.0 36 ..................................... ATGTCAATAGCTTCTGCATTCTCATTCGGTTCAAAA 5701 37 100.0 35 ..................................... TTCGTGGGGCTACGTTTACCGTGTTAAAAAACAGG 5773 37 100.0 36 ..................................... CATTCTTTCTTGCTGGAATATCGCGAAAAAACGCGA 5846 37 100.0 36 ..................................... GACACCTGAACAGCTTCAGACGTGTGTGCAATATCT 5919 37 100.0 38 ..................................... CGTCGCTTCTTTTCAGAAAAGGCATGGCAGCAGTTTTA 5994 37 100.0 37 ..................................... TTACTTTCTTCCATCGTTTTTCCTAACGTTTGTGCAA 6068 37 100.0 33 ..................................... GACATTTGCAGCACCGGCGGCGCGTTGGCTTCC 6138 37 100.0 37 ..................................... TCTCCTGGTAGTCGGTTGGCGACGTGAGGGCCGCGGT 6212 37 100.0 37 ..................................... TAGGCCACGCCGATCTGGAAGCACAGCGTAGGGTCTG 6286 37 100.0 36 ..................................... ATCGCCTGTTGGTATCTGGCAATCTTGCTTATCCGC 6359 37 100.0 37 ..................................... ATCTCCTTGAGGCGTGGGCCGATCTCGCCAAGCCGTT 6433 37 100.0 38 ..................................... AAATAGTCATGGCCCTGGCAGATCTCAGTCGCTACCAC 6508 37 100.0 35 ..................................... GCGGCGCAGGGCATTGACCAGGTCGTCATACTCAC 6580 37 100.0 35 ..................................... TCTCTACGGTGGCGAATAATTTCACGCTTGACAAA 6652 37 100.0 37 ..................................... ACGACGTTGCCTTGGAGATCTTCCCATTTTGTGCCGT 6726 37 100.0 38 ..................................... CCGCCTGATCCAGCGCCGAACGCGCCCGAAGCGCGGGC 6801 37 100.0 35 ..................................... ATTCGATGCCATCACCCAGCGCCGCATCGCCCACG 6873 37 100.0 35 ..................................... TAAAAATGCTTACCTTCTTCCTGGTCGCCATCCTG 6945 37 100.0 37 ..................................... GTAGTCGGCGACGTTGACCGTGATGGCGAGCTACCTA 7019 37 100.0 38 ..................................... TACCGCGTATCAGTCTGGCCTCGCCTCGCTCCCTCTGC 7094 37 100.0 37 ..................................... GGCAGCATTTTGGCGGAAGCCGTGGCAGTAACGCCCT 7168 37 100.0 34 ..................................... TCCAGCGCAGCCAACAACTCTCGCACCCGATGAT 7239 37 100.0 34 ..................................... TCAATGTCAGCAGCGGCGGCGAGTCGATCATAGC 7310 37 100.0 36 ..................................... TCATCTACATTGAAGCATGGCTAATCGCCCGGTTTC 7383 37 100.0 36 ..................................... GTCAGTTGGCACGAGGATACATTGCAGATTGCCGCG 7456 37 100.0 36 ..................................... TGATCGTGAAGCCAACACTCTTGGGTGTGGCATCGA 7529 37 100.0 36 ..................................... ACAGCAGCATCAGGCGTGACATCCGGGGCGAACAGC 7602 37 100.0 36 ..................................... TGTTAACGGTAGATAATACCGAATGGTTCAATCTGA 7675 37 100.0 34 ..................................... TACGGGCAAGCGTAGCAAAGTTTACCTCTATCAA 7746 37 100.0 35 ..................................... TGCGCCGCCATGTTTCACCTGGTTCGCCCCCCCGA 7818 37 100.0 36 ..................................... CATCTCGTCATTGCGACTCAAAAAACTGGGAAAGAG 7891 37 100.0 40 ..................................... TCTCTGATGGCACCGTCTACCGCACCACCGACGCGCTGGC 7968 37 100.0 37 ..................................... TGGCGCACCAGGGACGCAGGAGCAACGTGGACGGGGA 8042 37 100.0 39 ..................................... TAGGAGCCAGTTTCCCCCTCCCAGGTATAGATCCCAGGG 8118 37 100.0 38 ..................................... TCGGGTAATGTAGCACGCCTTGATCATATCCACCCCTA 8193 37 100.0 38 ..................................... CAATGCCACCTGTGAGGTTTTCTTTTTGTTACAGACAG 8268 37 100.0 34 ..................................... GCATCAAATTTACCATTATGGATAAAGACACTCC 8339 37 100.0 35 ..................................... GTCACAGTTGTTGGCGGCTTACTTGAACGCTGTTG 8411 37 100.0 35 ..................................... ATCTGTCGCTGCACGCCAACGCGGCGTTGAAGGAG 8483 37 100.0 42 ..................................... GTCTTCATGCGGGATGCCCAGATCCCGCATGATGCCACCGAA 8562 37 100.0 37 ..................................... GCGCTGCGGCTCGGCCTCCGGCGCGGCGAACTGCTCG 8636 37 100.0 38 ..................................... CGACAGGGTACGGGTGGCGCAGGCAACGCCACGACGCG 8711 37 100.0 37 ..................................... GTTGGAATTGCCGGTGGGATCTTTGGCGGGTTGTTTG 8785 37 100.0 34 ..................................... AGCTCATTGCGGGGCTATTGGGATGGATCGCCGA 8856 37 100.0 36 ..................................... CACGAAACACGCTAATGTAAACCTCTATACTACCTT 8929 37 100.0 36 ..................................... TTTGTGGCAAGCAAATACACCACTAGGCTTGAAGTT 9002 37 100.0 37 ..................................... CCTGGCATCATCGTGTTGAGCAGCACGCGCTCCAGGA 9076 37 100.0 34 ..................................... CGCGATAGCATAACTGATTGGATTAAGGACTTTG 9147 37 100.0 38 ..................................... TGTAATCTGACGCAACGTACCAGCAGGCATGTATGTAG 9222 37 78.4 0 ..........................GA..GCTTTG. | ========== ====== ====== ====== ===================================== ========================================== ================== 126 37 99.8 36 GTTCCAAAAGCCCCAAATCCGCCCGGCGGATTGAAAC # Left flank : GGCTACGCGGGCTGCGCTCCCTCGCGCTCGATCCGCTG # Right flank : CAGAATGACCGCCGTACTCCTCCCCCCCCCATTGGGGGCGCTTTTTTGACCGGGATATCCGACCTAGTACGGCGATTCGGCGGGGGAGGCGCCAGATGGTGGGATGCCGACGCCCAGAATCGATGGGAAACTGGGTCATGCCCCCCCGGAGCGGCCTCCGCAGGCACGCCGCAACGCCCCCACCCCGGTGGGAGCGCCGTATCCGTGCCCCGGTGAGGGCTTAGCCCGGTGGGCATGGCGCCGCCTTTCGTTGGACCCGCGCCAGCCAGAGCAGCAGGTTGCGTACCGCACTCGCCTGGTAGAGTTGCACCTGCGCTGCCGCATGCCCCACCCGCCGCGCCCGCCGACAGCCGTGGTAGCGCACCAGCCACGCAATCACGGGTTCGACCTGCCAGCGTCGCTGCAAGAGCGCCATGCCTTCGGGACTCTGGTTGAACTCCGCGCCCGTGCGCAGGAAGGCGTGATAGTCCGAAATGAAGACGCTGCGATGCCCGTTCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAAAAGCCCCAAATCCGCCCGGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 43207-54592 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFD01000009.1 Candidatus Oscillochloris fontis strain Chuk17 NODE_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 43207 37 100.0 37 ..................................... CTTATTGATTTTTGTAAACAGGGCGAGGGGGATTTAC 43281 37 100.0 34 ..................................... TCCGAGCTCGGGTCAGGGGGTGAAACCCTCACAA 43352 37 100.0 37 ..................................... GCCTGCGAAACGGGGAGGCCTTAGCTTTTTTTGCCAG 43426 37 100.0 36 ..................................... AAAAAGAAATGCCACCACCAACAAGTATACCAATTT 43499 37 100.0 36 ..................................... CAGGTTATGGCGCCTGATACCTCGGCACCTGAGGCC 43572 37 100.0 38 ..................................... GAGCACCTGTATGAATTGTCCGCGCGGCTCCTCAAATG 43647 37 100.0 37 ..................................... GTTTTCCAATAAATTTGGAAACGATGCTTAAAACCTC 43721 37 100.0 37 ..................................... AAACAATGGACCACGCTCGGCAATTTTCGCAGTACTT 43795 37 100.0 38 ..................................... AAGAAGAGGCACCCAGGCTGGGCGCTCTCGCGGGGCAG 43870 37 100.0 39 ..................................... AATCCTGTCCGCATGTCATACACCACACCCCTGAATTGT 43946 37 100.0 38 ..................................... ATGGAAAGGATAAAAGCCTTTACGTAACGCATGATAAC 44021 37 100.0 35 ..................................... TTGACAGGGCGAAGACAGCGATCAGGGCAATGAGC 44093 37 100.0 37 ..................................... AAAAATTACAACCGGAACCTGCCATTATCGGCAGGTA 44167 37 100.0 37 ..................................... CCACAAAGCGTATGCTCGGTGCTGAAGAACTGGCATC 44241 37 100.0 37 ..................................... ATAGATGTAATCATGGTATTCACTGGACCAGGAACAA 44315 37 100.0 36 ..................................... TGGGTGGTTCTAACCCACACGCCGACAAAACGAGCA 44388 37 100.0 37 ..................................... GCATTCAGTCTTTACTACCCCTGCAGAGTCACATGTC 44462 37 100.0 36 ..................................... ATCGCCGTCGGACCTTCGCGGTCAAGGTGATCTGTA 44535 37 100.0 37 ..................................... TTCCGCCCGACGGAGCCGCCGACGGGCATGACAAATT 44609 37 100.0 36 ..................................... AATTCATCGCCGGCCGCGGGCCATTGGCAGTAGCCG 44682 37 100.0 38 ..................................... CATCGCCGGCAGGCGGGACAGGAATCGAACCTGCAACC 44757 37 100.0 37 ..................................... TTTTGTGGTGACGGTTGCCCGCCATTCGAGAGGTGTT 44831 37 100.0 37 ..................................... TCGGACTCTCTCTCCCCTTGTGCGAGGTTTGGGGGGA 44905 37 100.0 36 ..................................... CCGGGGCCACCGGCGGACCTGGCTCCACCCACCAAT 44978 37 100.0 38 ..................................... TCGTACCCTATGCCCCCGCACTGGAGGCATATAGGATA 45053 37 100.0 37 ..................................... TGTCGCAACTCATACACACGATCATTACCTTTGCCTC 45127 37 100.0 37 ..................................... GGACTCTCTCTCCCCTTGTGCGAGGTTTGGGGGGAGA 45201 37 100.0 38 ..................................... ACCCGCAGAACCCTACCTATCGCCGATCTTTATTTTTT 45276 37 100.0 38 ..................................... TCAAGATCCGCCTGAACGGCGGCATCATCGCAAGCCAC 45351 37 100.0 39 ..................................... AAGTAGCTTCAAGAAACAGGGCGGTCAGGCAGGAAAAAA 45427 37 100.0 36 ..................................... TTCAACTTATCGGCCAATCCAGTTAAGGAAACTGGG 45500 37 100.0 40 ..................................... CTGAGGGGGCAGGCCTTGGGCGAACTGGTCGTTGAAAGCC 45577 37 100.0 37 ..................................... TTGCCGCGGCGGCGGCAACACAGAGGCCAAGGAACAG 45651 37 100.0 37 ..................................... TTGAACACAGCGAACAGCATCTGGGGGTTATTGCCGG 45725 37 100.0 38 ..................................... ACCGCTCGAGACCTCCACGGGTTTCCCAGTAGCGGCGG 45800 37 100.0 36 ..................................... GAGATCCGCGAGCTGCCAACCACCACCGCCCACCTC 45873 37 100.0 35 ..................................... TAGAAACCGGTTGCCAGCCCCCTCTTAGCCTCCCG 45945 37 100.0 34 ..................................... AGGTGTACCTACGACCCCCGACCACCACCACGAT 46016 37 100.0 35 ..................................... GCTTGGGGAAGTCCTGCCAGTTGCGGCCTTGGCGC 46088 37 100.0 37 ..................................... TCACCCCCCTAATTAAGGGGGACTAAAGGTTTCGGCG 46162 37 100.0 34 ..................................... TCGACTGAGGGTTTGGGTTGTTAATGGGCGTGAC 46233 37 100.0 37 ..................................... CTGGTACGGTGGGCAGGGAACTTCGGGTGGACAAGCA 46307 37 100.0 36 ..................................... TCGGTGGGGGTATTGAACACCCCGCCAGCACCATCA 46380 37 100.0 37 ..................................... TGACCCGATCAATACTTCCTAGGTTCATCCCTTTCTC 46454 37 100.0 35 ..................................... CCGTTGGGCCCAGCTGAACAGATGCGGACGCGGTG 46526 37 100.0 37 ..................................... GCGAACTATCTCTCCCCTTATGCGAGGTTTGGGGGGG 46600 37 100.0 37 ..................................... TTAAAGGTACCGGGGTAACGAGCGCCGGCTCCACCCA 46674 37 100.0 40 ..................................... TGTTACCCCGTCCACCCCCTTCGCGGGGGCCCCGCACGCC 46751 37 100.0 39 ..................................... GCTTTTTTTATTTTGTCGTTGCCCATCTTTCTACAAAAC 46827 37 100.0 38 ..................................... ATTATGAGGGAGATACACTCCCCAAAATTGGGGAGCCC 46902 37 100.0 36 ..................................... AATTTTGTCCAAATCTGAACGGGTAAAATTGTTGAC 46975 37 100.0 36 ..................................... TTTGTTTGGTTCTTGCACTAAAAGTTGAGTCAAAGC 47048 37 100.0 37 ..................................... CATTTGGAAAGAATCAAACCAAACAGCAATTTTGGAT 47122 37 100.0 37 ..................................... TAAAAGAGATTATTTTGGACAAACCAAAAAGCCACTC 47196 37 100.0 37 ..................................... AAAAATCTCCGACCCTCGTACGAAAAATCGCCCAATG 47270 37 100.0 38 ..................................... TTGATGGCGGAGGTGAGTTCGGCTTCAGGTGCGGGTTT 47345 37 100.0 37 ..................................... TCTCTACGAGAGACCCACTCCGCACGAACCGAGTCAA 47419 37 100.0 37 ..................................... GAGGCAGGTATCACCCACTGGACTTTCCAGTGAGCAA 47493 37 100.0 36 ..................................... GAAACAAACTACCCGCAAATGGTACATATCCATGTA 47566 37 100.0 37 ..................................... AAGTTGAAAGTCAAGTAAGCAAAAGCGGAACCAAACC 47640 37 100.0 36 ..................................... TCCCCTAGCTACTCGTTAGGGATGAACCTCCATTTC 47713 37 100.0 36 ..................................... GAACTTGGTTTGGACAGGGTGTTGCACCCCATCCCT 47786 37 100.0 37 ..................................... GAATTACAGCGAACAGTCTCCCCTCTGTGCGAGGTTT 47860 37 100.0 36 ..................................... TTGGTGACCTGGAATCGGGTCACTGTATTGGGGTCC 47933 37 100.0 36 ..................................... CATAAAGACACTGGCCTCGGTGTCGTCGTTTGACCA 48006 37 100.0 36 ..................................... AGCGACGCATCTGGAAAACTCCTTACATTAAAGTAT 48079 37 100.0 37 ..................................... TCGTCGAGATGCCACAACCGGTTAGAACGACCAGCAT 48153 37 100.0 38 ..................................... AGCGGTCCCGGCTCGGCCCACCAATTGGCGGGTGCCGG 48228 37 100.0 37 ..................................... CCGATTGCGGAAACGGATTATTTAGTGGGGTGACAGT 48302 37 100.0 37 ..................................... GGCGAAAATTTGAGGATATTCCAGAAAATCTTCGTTC 48376 37 100.0 38 ..................................... ATCTTTATACATGTAGGCGTACACGACCACGCCCACGT 48451 37 100.0 41 ..................................... ACGCGGATGCGGATGCGGATGTGGTCACGGGGGCAACTAAG 48529 37 100.0 38 ..................................... GGTAAGCCGCAGCCGGCGCTGATGAGCTCAGCGCAAGC 48604 37 100.0 38 ..................................... GAGACTGGCGGAGGGTTTTTAAGGCCCTCCGCTATCAA 48679 37 100.0 37 ..................................... ACCGAGCCGCAGCCACCCGTGAGGGGGTTGCCGCAGC 48753 37 100.0 38 ..................................... AACATCGCGTCGGTCAGCGTCACCACGAGGTTCAACTG 48828 37 100.0 36 ..................................... CTCAACGCGTGGGCGTACGCCCGCGCCGAAGGGCGC 48901 37 100.0 37 ..................................... CTTCAACTGGCCGTCCCAGCGATAGAGGCTCTGGCTC 48975 37 100.0 37 ..................................... TTGAATTTGCCACCCATCATAGGGTGGTTGTACCTCT 49049 37 100.0 37 ..................................... ACGGTTGCCCGCCATTGTGGCGGGGTCGGTCCGTCGA 49123 37 100.0 35 ..................................... AGGTCTAAGTAAGCAAAAAAACGGAACCAAACCTT 49195 37 100.0 38 ..................................... GAAAACATCATAACCACGACCACAAAAACCAGGACAAA 49270 37 100.0 38 ..................................... ATTTCCTCCGGGCAAACTAGGCTTAACACGGTCTGGTC 49345 37 100.0 36 ..................................... CGCCGGAGGGTGCCCATGCCTCACCGCGGCAACTTA 49418 37 100.0 40 ..................................... ACGTTTTATTTTCAAGCTGAACCGGAGTCTCGACCGGGGG 49495 37 100.0 37 ..................................... GACGATAACTATAGCCAGCGTCAGCCACGCCCTGACC 49569 37 100.0 36 ..................................... ATGGTTAACTCCTTCCCGGCACACTGCCGGGGTGTA 49642 37 100.0 37 ..................................... TAGTGCGGCTACCAGCACGACTGATCTTCCTGCGGGT 49716 37 100.0 39 ..................................... GCTCAGGCTCTGGATGGCCATGTTGCGGGGGTCGTTGAC 49792 37 100.0 37 ..................................... ACACCCACCAATTTGGCGTCGACGGCGTCGACTGGGG 49866 37 100.0 38 ..................................... CTCTCTCTCTCCCCTTGTGCGAGGTTTGGGGGGAGAGT 49941 37 100.0 37 ..................................... ACTTACCCCCGCATGAACAAGGCTTCTCGCCCATGGT 50015 37 100.0 37 ..................................... AAGGGCGGGTAGAGCTCGATAAGCACGGTTGTGGTAA 50089 37 100.0 34 ..................................... ACGGTGTTTTCACCATTGGGGCCGACGGCTCCGT 50160 37 100.0 34 ..................................... AGCGACTACACCAGCCGGCCCCGGCCCGAGCAGT 50231 37 100.0 37 ..................................... CGACTGGTGGGGGCGGAGCCTCCGGGTTGTGTGATCA 50305 37 100.0 38 ..................................... TTGCGGCGGCGGCCCCAAAGCCAGGGCCGGCGCCACTT 50380 37 100.0 38 ..................................... CTCCTCGCCGTCAAATATGATGTTGGTAAATCCCAGAT 50455 37 100.0 35 ..................................... TCCACATCCCGTTGTGTTGGACAACGCCGCTCACG 50527 37 100.0 38 ..................................... TCGGCCTTGTGGCCGGTGGGAGTGAAGTTGTGAAACTC 50602 37 100.0 37 ..................................... CGTGTCGCTGGTGGGGTTCAACACCCCACGATCGAAG 50676 37 100.0 36 ..................................... GCGGGTCATAGTCTTGCTCCTTTCGAGAGCTTTTTT 50749 37 100.0 36 ..................................... TACAGCGACGGTCGTACGAGGCGCCATCCGCCACGA 50822 37 100.0 35 ..................................... AACCGGAACCTCCCTCATTATGAGGGAGATACACT 50894 37 100.0 36 ..................................... CTCCTTTTGCCGTTTGGCTCTCTCCAACATTTGGAA 50967 37 100.0 35 ..................................... TTCGTCCCTATAGCGGATCTCGCTTCCGCTCCCAA 51039 37 100.0 36 ..................................... TATATAGCGGATCTCGCTTCCGCTCCCACGATTAGT 51112 37 100.0 35 ..................................... AGGCCCGTGGTCTGGAACCGGGTGACGCGGTTCGG 51184 37 100.0 38 ..................................... CTTTTCATAGCAAGCTCCTTCAAGCTAAAGCATAGGTC 51259 37 100.0 35 ..................................... ACCGTCAGACACCCGTTACCCGACGAGCAGTTAGG 51331 37 100.0 38 ..................................... TTCTTGCCCGTCTCGGGGAAGAACTGACAGCCGGGCTG 51406 37 100.0 38 ..................................... TGTTGGCTCCGTCCACCAGTTCGGTGGGGCGGGAGTGG 51481 37 67.6 11 ..............TG.TC.G...GC....AGCC..A GACCGGGAGGC Deletion [51529] 51529 37 100.0 35 ..................................... CCTCGTGCTGAGGCCCGATCGGATAGCCAAACACA 51601 37 100.0 37 ..................................... CTCAAGCCATCCGCCGTTTCAGGCGGGATTGGGCCAT 51675 37 100.0 37 ..................................... TCAACGGTGTCGATCGCCAATGTGGGGGCAGATACGC 51749 37 100.0 37 ..................................... AGATACGCGCTGACCGTCACAGATGAGTGACCCCCAC 51823 37 100.0 37 ..................................... CGCTCAAACCACACGGGGTCAGCCTGGGCATAGCGAA 51897 37 100.0 41 ..................................... CGACAGGTTGGGACAGGGTTGTGCACCCCATCCCTGTCACA 51975 37 100.0 37 ..................................... TAGAGTTCTGGGACGCCGGCACACCAGAGTTTGAGGT 52049 37 100.0 38 ..................................... GTACTGGGAGCGCAACGGCGGAATGGAGCGCTTCGGTT 52124 37 100.0 37 ..................................... GCGATTTATGGAATAATCGCCGTGCTATCGGTAATGT 52198 37 100.0 36 ..................................... CTCTTCCAGCTCGCGCTGGAAGGTCCGCCTCATGGC 52271 37 100.0 36 ..................................... TCGGAGGCCGCTCTGCTATCTCCGTAATGAGGGAGA 52344 37 100.0 37 ..................................... GCGAACCCTACCGTGAGCCCCTGCAGTAGCCGTCGAA 52418 37 100.0 36 ..................................... GATGCTGTGGCCCGTCTCGGGGAAGTAGCGCTGATC 52491 37 100.0 37 ..................................... AGCAAGCCCTCCTCCTCAGCGATCTGCTGGGCACGGA 52565 37 97.3 37 ..................................G.. TTTTATAAGGTCTTCGGGTAGTTTCGTAATAAACCCC 52639 37 100.0 36 ..................................... AAAACTTTAGTCAGTGGCCCTCCTGCCAACGGCAAG 52712 37 100.0 37 ..................................... TAAAAGATGTTGCTGAACAGGTTCTTCAAGACAAGCC 52786 37 100.0 37 ..................................... AAACAACAGACCATGTCCGACATTTCTCGCAATATTT 52860 37 100.0 37 ..................................... CCCGGTCTCCGCGAAGCAGAGCTTCGAGGATGCCTGC 52934 37 100.0 36 ..................................... GGGCCGGATCGCGGGTCTCGGCCGCGGCGGCCCTGA 53007 37 100.0 38 ..................................... CATAGCGCCGCCTATGACCAAGTCACTCTCGAACGCCA 53082 37 100.0 36 ..................................... GGGCGACGAGTGTGTAGGCCGCGCGCTGGGCGGCCA 53155 37 100.0 39 ..................................... GCGAATTGCCACTCACCAAGGTGGTGAGTGGGCCCCCCG 53231 37 100.0 37 ..................................... TTTCACCTACGCCGGATGCTCATTACCACCACGGGTT 53305 37 100.0 35 ..................................... TCCTTTAGTGTAGCTATGGACGACGACGTCCAGCA 53377 37 100.0 37 ..................................... TTGCGGGCCAGCTTGTCAAAGCTCACGGTCGTTCTCC 53451 37 100.0 41 ..................................... CGACAGGTTGGGACAGGGTTGTGCACCCCATCCCTGTCACA 53529 37 100.0 37 ..................................... AAGCCCTGATCACTGCGAGCGACGAGGTCGCGCGCAA 53603 37 100.0 38 ..................................... GCCTGCCCCGTCGTGCAGGACCTGACACTTATGGGCGA 53678 37 100.0 34 ..................................... CAGAGCCCGCAAGGCGAACAGGAGCGCGAAACCG 53749 37 100.0 36 ..................................... GATCGGGGTGACGGTTGCCCGCCACTCTTGCGGGGT 53822 37 100.0 37 ..................................... GTGACGGTTGCCCGCCACTCTTGCGGGGTTGCCCGGT 53896 37 100.0 37 ..................................... ATTGGGTCCCCGGCCGCGGCGACGGCAGACTTAGTCT 53970 37 100.0 36 ..................................... TCGGGTGGAGATGTGGGTGACATTGGGTCACCCACA 54043 37 97.3 37 ....................................G CAGGTTGAGCTCGAGCCCGTCGCCGACCGCCTCACTC 54117 37 97.3 36 ....................................G CTGCACAGCCAGCGTCTGCCCTGGCACGTACTTTTT 54190 37 100.0 37 ..................................... GGGTTCTCAGGGTGGAGCTCGAAGCGGTTCCGCTCGA 54264 37 100.0 36 ..................................... CCTACCAACTGAGCTACAACCGCCGGAGGGACTTGA 54337 37 100.0 36 ..................................... ATCCATCACAGAACTTGCATTCTGTGTTGGAGCAGC 54410 37 100.0 37 ..................................... CGGAGCCATGCCGCGTGCAGGATGAATGTTTCTTGGT 54484 37 100.0 35 ..................................... CTGAGAAACAAAGCCGGCACTCAAAAAATAGAGAG 54556 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 155 37 99.7 37 GTGCTTAGATCCGCCCCGAAATGAAGGGGTTTGAAAC # Left flank : CGGCAGCAACCATCCTAGCAACACCAAGCGTTCACTGATCGAACGCGCCACCGGGTCTTTGGCCAACTGCGACCATGAGCGCAGCGGCCCAAAGCGCAGCGCCAATGCCGCAGGCCGCATCCCCGCATGCAGATCGCGCAAGACATGCAGCGCCGCCTGCTCATCCGCTGCAAGTGATTGATAGACTGCCCGTACCGTAGCCTGACGGCATAACGCCTGCCGCAAACGCAGCACACGCTCTTCGGCGCTACACTGATGGGGCAGCGAAATACGCTGATAGCGCGCAATTGTCTGCTGCGCAATACCCGGCAGATCGGCAAGCATCCGTGCCCAATGATTCATGGTTGCCACCCAACAAAAGACCTGCTATACTGAGCTTGACATACGGAGTATGCACATATTTGGCCAAAAACGCAACCCTACGGAGTATCGCTGGTCAATGGCAGACAACATTTCAGCCATCAAGAAGCGCCAAACCAGCATAGCCCTCGGACAATGCG # Right flank : CACTGATCGAGGGCGTATACCCCCATAGGCAGTCGGTTAAGCATCCTCTTGCGCCTCGGTTGTTGACCGCTGAGGACGCCGAGGAGCGCAGAGGAAAAACCAGAGGTCGTACCCACAGGGAGCGCGAAACCCATCCCTCTGCGTACCTCTGTGTCCTCTGCGGTTGATAGGTTTTACTCCCAAGGAGGCGGTGGGGATTCATCACAACGAAGCCCCTCTTTAACCGAACGCCTATGAGTATACCTCCCCGTTAAAGGACACGGGTGCTTAGATCCGCCCCGAAATGAAGGGGTTTGAAACGCCGGAAGGGGCGTCCCCATAGGCGGAGCACAGGCTTCCATCTGGTCACGATGCACCAACGACCGACTGAGATCTGGGACTCCCCTGTGCGGATGTAGGGGCGCGTCGTGACGCGCCCACGGGATGCGCCGATACGGTGGGCAACCACGGGATAGGTTGGGGCACACGGGCTGGGCGCGTCGCGACGCGCCCCTACCCGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTAGATCCGCCCCGAAATGAAGGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 17151-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFD01000053.1 Candidatus Oscillochloris fontis strain Chuk17 NODE_112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 17150 37 100.0 33 ..................................... GATTGGATGCTCCGCCTGACAGCGCTACCCCGA 17080 37 100.0 35 ..................................... CGCTCATCTTGTCCCCCTATACGGCTACGTTACGC 17008 37 100.0 38 ..................................... GCCTTGACTTTAGTCGCCTGGGTTGCCTGTTCGCGCTG 16933 37 100.0 37 ..................................... CGGTGGTCGCAATTGCGCCCACTTGCGCCGCCGTGGT 16859 37 100.0 37 ..................................... TGCCAGAAACTCCCGGATCTTCTTCGGGCTACGCCCG 16785 37 100.0 37 ..................................... TGCTCCTTCCATGAGGATGCCCTGCCCCAGCAGCCCC 16711 37 100.0 35 ..................................... AAATCGCCTGCTGCCGCTGCGCCAATGGCTGCCGC 16639 37 100.0 39 ..................................... GATGCACAATAAAAGCCCCGGTACTCGTGGTGAGTACCG 16563 37 100.0 36 ..................................... AGATCTATGCCACTGGCACGTATGGATCGAGCGGAT 16490 37 100.0 36 ..................................... CGGTCAGATCGCTGGCTGCCGCCGCCCCGATGTCTG 16417 37 100.0 37 ..................................... CCGTACTGTGCCTGAAGCTGCACGGCTGCGGTACTGA 16343 37 100.0 37 ..................................... ACGATTGGTATATAGTCAACGTCCACACCACCTATAT 16269 37 100.0 35 ..................................... GGACGCCCTTGGTGACGAGGGGAAAGAAGAGCTTA 16197 37 100.0 38 ..................................... CGGGGTAGCGCTTCAGCACTGCCTTAATCCCGTCGCGT 16122 37 100.0 38 ..................................... TGCCCATCAGCGCCGCTACCTGATCCCGTGCCACCTGA 16047 37 100.0 36 ..................................... TCTTCGGCGGCGCGGTTGATGCCGAGGATGATCCGA 15974 37 100.0 34 ..................................... ATTTCGAGTGGCTGCGCAGTGGCGGAAGCGCCGC 15903 37 100.0 36 ..................................... TGATGCGCCTCGACATCAACGCAGAGGGGATCACGG 15830 37 100.0 37 ..................................... TTCCAACTTTCACAAAGAATGATCGTTCAGGCCATAG 15756 37 100.0 35 ..................................... TGCATCAATCGGCGGGGCTGGGTGATGAGGGATTT 15684 37 100.0 37 ..................................... GCAAAGGATGGCATTGACCATGACACTCTTCCCCTGG 15610 37 100.0 36 ..................................... CGAAGGTTTGCCGGTTCGCCATTGACAATGATGCGC 15537 37 100.0 37 ..................................... TAACCCGCGACCTCATTCGCCGCTACGCGATCCCCCG 15463 37 100.0 35 ..................................... GATGCCACATCGTGCGTTTGAGCAGTGGCTGCTTG 15391 37 100.0 37 ..................................... TCACGCTATTTGATGCAACTCCGCTCGTTGTGGCGAC 15317 37 100.0 37 ..................................... AAGGCGAGGGCGGTCGAGTCCTTGCCGCCACTGAAGG 15243 37 100.0 39 ..................................... ACAGGCTTGGGCGTTGCGGACGCTTCGGATTTGGCCAGA 15167 37 100.0 36 ..................................... AACGCCGCTTGATCGTCGTCACTCAATGCCTCTATT 15094 37 100.0 36 ..................................... AGCATTTGCCTTGCGTGCGACCTCGACAATCCTTCG 15021 37 100.0 37 ..................................... GTCACCTCGCACAGATCCGAGACCATCGAGGCAACGA 14947 37 100.0 36 ..................................... GGGCAATCTCTGCTCCGGCCCAGTCGCCGCGCTTGA 14874 37 100.0 37 ..................................... AAGCCGGTTGCGGCATACTCGAAGATCACCCCCGGCG 14800 37 100.0 35 ..................................... CTGTCATTCGTATACACATGCGCCGATGCGGTACG 14728 37 100.0 37 ..................................... GCAAAGGATGGCATTGACCATGACACTCTTCCCCTGG 14654 37 100.0 37 ..................................... TTTCGTTGCGCGATGGGCTTGACAAATGGGGGTAGAT 14580 37 100.0 36 ..................................... AGTATGAAGATCTGGTCAACGCCCTACGGCGCAACC 14507 37 100.0 37 ..................................... TCTCAGGCAGATGGGCGCGTACAGACGTATCTGATGT 14433 37 100.0 36 ..................................... TAGCTGATGGCTCTGGCCGCGCCCGAGATCTCTATG 14360 37 100.0 39 ..................................... TCGCCATAGTCGACATTAATGATGCAATCATCGTCCCGT 14284 37 100.0 36 ..................................... GTCTATATGGAAGATCTTACTAATCCAGCCCAGAGC 14211 37 100.0 37 ..................................... TTTTTAATGACCACCGCTACCGACCTCTCTGTAACCG 14137 37 100.0 36 ..................................... CAACGCTCGGTGGAGATCAAACTGATCTCGTTAGAG 14064 37 100.0 37 ..................................... CGTCTCGCCACCCTCGCACAGACGACGCAGATGACCG 13990 37 100.0 35 ..................................... TAAGGTACCGCTCTTTCAGCGGGGCGGGTACCGAG 13918 37 100.0 38 ..................................... CCTCGCGGTCGGCGTGCGCAGTAGGCGCTTGCGACTGA 13843 37 100.0 35 ..................................... CCGATGAAACAGCTAGCAATCACCGAGTGGGCCGA 13771 37 100.0 39 ..................................... TACACGATACGCCTAATTCGTCAATCGCGTAATTAGCGA 13695 37 100.0 41 ..................................... TTTGATCATCAACGCCACATCATTGAGGCGCTGGGCACGGG 13617 37 100.0 37 ..................................... ATGATCTCTGGACATTCGGCAGCATCTCGTTTCGTCG 13543 37 100.0 36 ..................................... GCACGCAGCAGCAGGCCGACGCGCATACCGGCACGG 13470 37 100.0 36 ..................................... TTGAACGCGGTAGCCGTATCAGAGCCAAGTACCTCA 13397 37 100.0 37 ..................................... TATCCAGAACAAGATCCATGCCGACTCGTGCATTGCT 13323 37 100.0 36 ..................................... ATTGGCTCTACTGCGATCCAAGCGGCACGGTGCGCA 13250 37 100.0 37 ..................................... TCCTATACGATGATCAGATCCTCATCGGCCCCGCTGA 13176 37 100.0 35 ..................................... TTCGGCGTCACGAACGAGACCGATTACTATGAGAT 13104 37 100.0 35 ..................................... TGCCGCCCTAGCGATGTGCTGGGGCGGCGTATAGG 13032 37 100.0 36 ..................................... GTTGCGCGATGCGGCCCAACCCTTGATGCCGAGCGC 12959 37 100.0 35 ..................................... TAGGTCTGGATTGACGGCCAGACCGATGCAATCAA 12887 37 100.0 36 ..................................... CTTTCGTCGTGCTGGCTCTCACCAAGAAACGCCAGG 12814 37 100.0 37 ..................................... TAATGCAGACATAGAGCAACGGCAATGAGCCGAAGCA 12740 37 100.0 36 ..................................... GTTGAATGCTCTCGACATCGCCGGGGGCTTGCAAAA 12667 37 100.0 35 ..................................... ACCACCGCATTCGTCCGCTCACCCTGCATCAACCG 12595 37 100.0 36 ..................................... TCATTAGCCCAGAGCTACCCAGCGTGCCCCCGGCCT 12522 37 100.0 36 ..................................... CGAAATCACCAGCCGCAGTTGGACGGCCACGGGCAC 12449 37 100.0 34 ..................................... TCATATCCACAAGCTGCTGCCTGATACCCACCAG 12378 37 100.0 38 ..................................... TATCTTCCTCATCACGGAGCGATAAAGATCCCGATATG 12303 37 100.0 35 ..................................... AGAATTATCAGGGTAGTAAATGCCAGTTCGGAAGA 12231 37 100.0 36 ..................................... TAGTTCAGCGCCCCGGTTGGCAGCACCGTCACTGGC 12158 37 100.0 35 ..................................... GGTGGCGGCGTGGCGCTCACGAACGTCACCCCAGC 12086 37 100.0 37 ..................................... TTAGCGCCAGACGGCGATGTGCGCCACAACAAGGCCG 12012 37 100.0 36 ..................................... AACCTGGATCAATGCCACATCGCGCAGGAAGGCATC 11939 37 100.0 37 ..................................... CCCAGGAATACTACTTCATCCCCAGCAAGGGGGAGTG 11865 37 100.0 37 ..................................... AAACACTGTTAGCCGTAGCAATAGCAGATGAACTAAA 11791 37 100.0 36 ..................................... CAGGTTGCGGCTGAGCGCGCCCAGCGCCAGCAGGAA 11718 37 100.0 36 ..................................... CTCGTCAGTTCGCCCAGGCTGATCTTCCAGGTGTAG 11645 37 100.0 40 ..................................... CGATTGTGACGGCGGCACTGGCGCTCATCCAGGGTGTCGT 11568 37 100.0 37 ..................................... TCAAACTGTTCTACGGTCAGGTTGGGCATCTGGTCTT 11494 37 100.0 38 ..................................... GCTCTCCTTCAGCGTGGCGGCCATCTCCGCCAAGGCCG 11419 37 100.0 35 ..................................... CCTGGATCACAAGGAACTCTGCGGATGACATTGAA 11347 37 100.0 36 ..................................... ACAAGCCAGAAGATACGATCTCGATGCTGCAAGCCG 11274 37 100.0 35 ..................................... TGGCGGAGAGGACGCCTAAATCATCGCGACGGAGA 11202 37 100.0 36 ..................................... TGTCTCATTCACCGTCCCCGACGTCGTGCGCAGTTG 11129 37 100.0 37 ..................................... GAACTATGGCGTGGAGAGTCGGATAGCTTTAGTCCGG 11055 37 100.0 36 ..................................... TGATGATCTTGATGCGTTGACCGGAGGCTTGCAGAA 10982 37 100.0 46 ..................................... TGGCAAGTGGCTGGTAGACGGTATTCGCGCCCTGGCGCAGATTGAA 10899 37 100.0 37 ..................................... GTGGACACGTTGCCTACCGGGGTGACGTTCGTGAGTG 10825 37 100.0 38 ..................................... GGATACACGCCGACCACACACCTTGTCATAGGTATAGA 10750 37 100.0 37 ..................................... CGATGCAAAGTGGAGTCAGCCTCTTGACTGCTTCCAA 10676 37 100.0 40 ..................................... TCGCTCGATCCTGCCTTTGGCGGGCATTACGTGCGCATGG 10599 37 100.0 37 ..................................... CCGAACTCCGAGCAGCATCTACATGAATGAATATATC 10525 37 100.0 36 ..................................... GACAAAGAACGACGAAGAAAGCGGAGAATGGTACTC 10452 37 100.0 38 ..................................... GGCCAAAATGAACCAACCGGTGTCTTGTGTGTAGCCTA 10377 37 100.0 35 ..................................... TACCGTCTAACATACAGCAACGGCGAACACGAGAA 10305 37 100.0 37 ..................................... GATGTCTATGCTCTGTCCTTGTTACTGTTTCATTTCC 10231 37 100.0 38 ..................................... CTTCATAACTACTCCCCTCTACGCAAAAGACCACGGAA 10156 37 100.0 36 ..................................... TCTTCTATTGGCTCTTTTCTGGCGGTTTTTTACAAA 10083 37 100.0 35 ..................................... TGGTTTTCGTGCGATTATAGCACGGACTCTCTACG 10011 37 100.0 34 ..................................... TGGGCAATCACCCACACAGCTCCAGACGGATAGA 9940 37 100.0 35 ..................................... GATGATTATGCCGACTTGCCCTTTTGATTTGTATG 9868 37 100.0 36 ..................................... CCCACAACGACGCACTACGGGCACGAGGAAGCCCTG 9795 37 100.0 37 ..................................... TGGTGTGATCACGATACTCCCATGGCTTCCTTCTCCC 9721 37 100.0 37 ..................................... CGCTGATACCGGCGCACCACACATGGAGGAACTATGG 9647 37 100.0 36 ..................................... CGTCTGGTTTTTTTGGGGTACGACTTCCGGCACGTC 9574 37 100.0 42 ..................................... TCAGTACCGGGAGAACGTGCCGCATGCCATGCGGCACATCAT 9495 37 100.0 35 ..................................... CGAAATGAGACCAATTCGGATGCCCCAAGGCCCAT 9423 37 100.0 35 ..................................... ACGAAGGTTTCCGGCTGGACAATCATTCAGCGGCT 9351 37 100.0 39 ..................................... TGCGAAGATCGACACTACACCCAGGAGCAACAAGGATGG 9275 37 100.0 37 ..................................... GATTCAAATTCAGGATGTACCGTGCGCCGCCTTCTCC 9201 37 100.0 36 ..................................... AAGCTGGGCGCAAAGAAAAGCGTGCCACGCTCCCGC 9128 37 100.0 38 ..................................... TAAAACTATGACAACTGTTTTGCTTGTTATTTCATCAT 9053 37 100.0 37 ..................................... TTATTCATGCTTGGGATGATTTGGACATATTGACCTT 8979 37 100.0 35 ..................................... AGATGGTGTTGGATGGTGTTGGCTAGATCACTAGC 8907 37 100.0 36 ..................................... ATGCATTAATCCTATCCATATTGCCCCATCCCGGAT 8834 37 100.0 37 ..................................... ACGCTGGCCGCCCCCTTCCGCGTGTTTGAGCACATCG 8760 37 100.0 38 ..................................... TCCGGGTAAGTTGGGGCGGCTAGGGTAGGTATCGCCCG 8685 37 100.0 38 ..................................... ATCATCGTTTCGATGGGCGCGATCATGACCGTAGCCGT 8610 37 100.0 35 ..................................... GGCCTCGGCCACCGGGAGCGGAGTCGGCATCAATC 8538 37 100.0 37 ..................................... ATTGCCTCCAATCGCTCTACCCCTGACCATATTCAAG 8464 37 100.0 34 ..................................... GAGCCATTGCCACGTCGGGGCAAGGCTGCGCTCG 8393 37 100.0 34 ..................................... TGTTCAGGAGGCGCTGCACGGCACTCCGCGACGC 8322 37 100.0 37 ..................................... ATCTCGATCATCTTCTGGAGTTCATCAAAGAGTTGCG 8248 37 100.0 37 ..................................... ATAGATCAGCCCCGCAAATTCCTCTGGGCTGCGCCGC 8174 37 100.0 36 ..................................... AGGGACACCAAGGATTGGTGTGTTTCCTATACCTTC 8101 37 100.0 37 ..................................... TAAACCCAAAAGAGATCGGGGAGATCGCCTAGATCGC 8027 37 100.0 37 ..................................... CTCATTAATCTCCTTGATGGATTTCTCAATGCCAAAG 7953 37 100.0 36 ..................................... GCCGAAGAGCAGCCCTACACCTGGGTCTTGCGGCCC 7880 37 100.0 38 ..................................... CGCTCGGCGCGGCTCTTCACCGCCTGGGGCGCGTCCGA 7805 37 100.0 37 ..................................... GCCTTCCTGGCTGCGCTCGGCATTGTCGGAAAGCTCG 7731 37 100.0 34 ..................................... AAGACACAGAAGAGGGCTGGGGTATCCACAAGGG 7660 37 100.0 35 ..................................... TGATCTTGAGGTCGAACAGGCGTTGTCCGAGGCCG 7588 37 100.0 37 ..................................... TTCCTCTTGGTGAGGCGGTACCGGCTTCGGATCTTGA 7514 37 100.0 36 ..................................... TGGTGCGGGTACCCGTGGGGGTAGTAGTAGTATCCT 7441 37 100.0 39 ..................................... GTGTTGCTGCTGAGTGCGTGTAGCCAAAGTGCCCCAGCG 7365 37 100.0 36 ..................................... AACTTGGTATGCCGTGGCCAGACGAGCATTATCTCA 7292 37 100.0 35 ..................................... AGCGTTTGCCTTAGCGACATTGCTCCACCGGCTGG 7220 37 100.0 38 ..................................... CGAGACATGGATCGTCCCCGTGAACGGTGTGTGTGTCA 7145 37 100.0 38 ..................................... CTACCTGCCGGCGCTATCGGGGTTGATGGCGACACCAT 7070 37 100.0 36 ..................................... ATTCCCTGTTGCGCCCGAAGGTCGCGCAACAGGGAT 6997 37 100.0 36 ..................................... AGCGCGGGCAGCGTGGAGGGCTTGCGCGGGCCTGTG 6924 37 100.0 36 ..................................... ATCTATGAGTAACGCTACGTCGTGCAAATCGCCATT 6851 37 100.0 38 ..................................... GAACCCGGATCACCGAGCGGCACCATTGTCTGTCTTTG 6776 37 100.0 35 ..................................... TATTGCACGCGGAAAGAATACAGAGGATCGGATTG 6704 37 100.0 35 ..................................... GTATCGCTCGCTGACAGACAGGGCAAAAATAAGGA 6632 37 100.0 35 ..................................... CATCCTCCTTGGCGGCATCGCGAATGATGGCATCC 6560 37 100.0 34 ..................................... TGGCGCGACGGGGCGGCGAGTGAAGTACGAGGAG 6489 37 100.0 38 ..................................... GATCCGGGGCGCGTCTATCGCGCTATTCGGCGGCCTAG 6414 37 100.0 37 ..................................... TTCCTCGAAGAGCACGGCGCTCTCTGTGGCGCTGCCA 6340 37 100.0 37 ..................................... CACGATACTGGACACGATTCCATTCTTCCGCCAAATG 6266 37 100.0 36 ..................................... CGTTCGCTGCTATGAATGTTCACCGCCGCCCCCGTT 6193 37 100.0 38 ..................................... CCCGGCCTAGCTCATCGGCTGAGATTTCTGTAGGATCT 6118 37 100.0 34 ..................................... TGAACCCCGCTCCGAACCCAACGCAGCAAAACCG 6047 37 100.0 36 ..................................... CGCTTTTTGACGGCCTGGTGGTGAGCTACACAGACG 5974 37 100.0 36 ..................................... TGTGGAGAGGGCAATCCCCTTCAGTGATCTGCTCCC 5901 37 100.0 41 ..................................... ACACTGGCCATGAAGCTGGCCTGGTGGCTGTTGCCATAGGA 5823 37 100.0 37 ..................................... GTGTGGCGCAAGCGGCGCGAGGCCACGCCCAGGCGCG 5749 37 100.0 37 ..................................... ACACCCTTCCCCACGCTGCCGCTGGCGCTGCCAACGA 5675 37 100.0 34 ..................................... AAAATCCTCAGTACTGAGGATGTCACGAACAACC 5604 37 100.0 36 ..................................... CGTCCCTGTACCCGGCCCGTCTATGGTCAGATATCC 5531 37 100.0 35 ..................................... CGCCCTTGAAATTCACCGACCAAGCGTGGTACTGC 5459 37 100.0 37 ..................................... ACAGAGACGGCGGGGAGCTTGGCAGCCTTCGCAGCGG 5385 37 100.0 35 ..................................... GAGTGCGCGACAGGCCATGGCGCTGAAGCCCCTGA 5313 37 100.0 35 ..................................... CATCGCAGGCCCACGCCGTAGCGTGAGCCCCTGCG 5241 37 100.0 38 ..................................... GATCTCAAGGGCGGCATGGAATTGGCCTACTACGAAGA 5166 37 100.0 38 ..................................... TCAATTTTGATCACCTACTCCGCTGGAATCACCGCGTT 5091 37 100.0 35 ..................................... ATACTGGATATCTTCGTATGGGCGGCACTGATAGC 5019 37 100.0 41 ..................................... GATAAAAATCAACTATTCTCCCCCTTGGCTATGTGCCAGGG 4941 37 100.0 37 ..................................... CCAGTCTCGGTCTATCGTATCAATCGCTTCGATCAGC 4867 37 100.0 38 ..................................... ATTGTCGGCAAGGGCAACCGCCCGCGCTGGCTCTTCTG 4792 37 100.0 38 ..................................... ATAACAACCTCCTATCTAAATTTGAAGAGATGATACGA 4717 37 100.0 36 ..................................... GATCAGGCAGAAGATTATGCCTTTGTTGGCGTGGGC 4644 37 100.0 34 ..................................... TGGATAACCAGCACGTCACCCCCATTGATATTGC 4573 37 100.0 33 ..................................... ATGTTGCCCCCGGCGATCCCATCCGCCCGAAAA 4503 37 100.0 35 ..................................... TGTAGCGCAGCAAACTTCTGACTGAGGTTGGTTTG 4431 37 100.0 37 ..................................... GCTTGCATAGTTCGTCGTTACCCTTGCTAGAAATGGT 4357 37 100.0 41 ..................................... ACGGGCAGCAGCCCAAGCGAAGTGGCGAAGCGACTACCCGG 4279 37 100.0 39 ..................................... TTTATCCCTTCCTATAATCCATTAATCCATATTGCCCCA 4203 37 100.0 38 ..................................... TTCGTATTTCGCCTTGGGCGGGCGAACGGCTACCAGAG 4128 37 100.0 38 ..................................... ACGCCCTTTCCCACGCTGCCGCTGGCGCTGCCTACGAT 4053 37 100.0 36 ..................................... TGCAAGCAAAGGCACGACGCCCAAAGGCATCTTGCA 3980 37 100.0 36 ..................................... TAATCACGCCCAGATCGGGGACGTGTTTCGGCTCAA 3907 37 100.0 41 ..................................... ATCGCGAAGTACTGAGGGTTACTCAAATGGAGAAGTCTTGA 3829 37 100.0 38 ..................................... TCCATCGCCCCATTCTCGGCAAAGCGGATCGCCGCGCC 3754 37 100.0 38 ..................................... ATCACTGAACGGCTGCGCGAGGTCTACCACCACCTCAA 3679 37 100.0 38 ..................................... TGAGTCCCGTGGCCGGGAGCAACCCGGCGTTGTGTAGC 3604 37 100.0 37 ..................................... TGTTGGGACATACTTGGGGCCAAATGCACGGTATGCA 3530 37 100.0 38 ..................................... CCTGGAATGCCACAAACATTAAATAATAAGAAGGTGAT 3455 37 100.0 35 ..................................... GTTTGCTCATGTTTGCTCTGTTTGCTCAAAAATGG 3383 37 100.0 35 ..................................... ATGCTGAGTCAGTCCGAGCTTTCCGACAATGCCGA 3311 37 100.0 38 ..................................... CTGCAAGAGCACGGTCCGCTCACCCCGCAGCGGATTGC 3236 37 100.0 35 ..................................... ATAGCCGCGATATGCTACCTTTAATTCTTCGAGAT 3164 37 100.0 37 ..................................... TGGCAGGGACCCAGCCATCAGATCGCCGGGGCGCTGA 3090 37 100.0 36 ..................................... TTCCAGCCACGTCTCAAAACCGGCACCAATGCGCGG 3017 37 100.0 39 ..................................... ATCTTCTTGCTCTGGGAGACCGGTGCGCGGGCATCGGGT 2941 37 100.0 39 ..................................... ACACGAAAAAGACGATCAGCAGAATAGGCACGGCTATGA 2865 37 100.0 36 ..................................... CGTTGATGTACTGCTCAACCGCCCCCAAGTAGTTGC 2792 37 100.0 36 ..................................... TCTGTTTGCCCTTCAGCGCCGTCAGACAGCGTTTGA 2719 37 100.0 36 ..................................... CGCTGCTACCATTGGATGCCGGGTCTCTCCCCGGCA 2646 37 100.0 39 ..................................... CACCAATGACATCTACACCCGCCGTGAGCCGGGGGCGGC 2570 37 100.0 39 ..................................... GTGAAGTATGGGTTTGCCCCAAGAACCATATACCAGTGG 2494 37 100.0 37 ..................................... GCCGTCTTTGGTCTCTTCAGGGAAAACACGCACGAGG 2420 37 100.0 38 ..................................... CCTCAATCAGCGCCGTTCGCTCCGGAGTCAGTGCGCGT 2345 37 100.0 36 ..................................... TGGTCTCGCATAGGTCCTCTTCTTGCGGCTCTGGCC 2272 37 100.0 33 ..................................... TGGCTATTACCGAGAGGGGGGGAAGTTGAAGAA 2202 37 100.0 37 ..................................... CGACACCTCGCTGATGGGGACGATACTGAGGTGGCGG 2128 37 100.0 37 ..................................... CAGAAAACACACCGATCCTCGGTGGCCCTTACCATAG 2054 37 100.0 39 ..................................... AACATACCACAGCGCATCAAGTCTACAATGCAGTGATTA 1978 37 100.0 36 ..................................... CTTAATCACGGCTGACTCCTTTGGCCTTTGCTACAT 1905 37 100.0 37 ..................................... CTCTTGTCCTTCTAGAGTCGTGTTCACGGAGTTCTTC 1831 37 100.0 36 ..................................... TGGCCCAACCAGATCGCCCGCAAAATCCCGCCATTG 1758 37 100.0 37 ..................................... GAGCAACCCATCCCGCGCCCCCGCAAAACGGCCTCAA 1684 37 100.0 36 ..................................... ACTTGCCACCTGAAACATCCAGACGCCGCTTAATCT 1611 37 100.0 37 ..................................... CATAACACCTTATGATATGTCGTATTCGTGATCCCGT 1537 37 100.0 35 ..................................... AGCGCCTGAAGTAGTTGCACGATCTCGCCCACCTG 1465 37 100.0 37 ..................................... CCGGGGCTTTTGACGTGCAGACTACTAGACGGGCCTA 1391 37 100.0 35 ..................................... TACTGAGCGCCTTACGTTTCGCCCGGAGTGCGTAA 1319 37 100.0 36 ..................................... ATCAAGCTCAAGCGCCTGTCGTTGACGTTCGGCGTC 1246 37 100.0 37 ..................................... CGGATCACCAGCGACGGTGTCACCTACTACCTTGTCA 1172 37 100.0 36 ..................................... GACATTGCCGCGCCTTCAGACTATGATCAGAATCGC 1099 37 100.0 36 ..................................... AACGCGGGTCGCTGCATCTCGTGGAGCATCAGCCGC 1026 37 100.0 36 ..................................... TACCGCCGCATCACCGAGTGCATCACCGAATTGGTG 953 37 100.0 37 ..................................... CCGAAGACTAATGCTCATCCTCGTCAGTCATCATCAG 879 37 100.0 37 ..................................... CTCTACGCCACGCCGGGGTTCCTGGAGCACCCCTACT 805 37 100.0 36 ..................................... GCGTCGGATGCCCAAGCCGCTGCGGAGGCAACGGCG 732 37 100.0 37 ..................................... CGCCAAGGGCTTCTGCGACCGCCGTATCGCGCGTACT 658 37 100.0 37 ..................................... CAAGTGCTGCGCCACATCCGCGAAGAGCACCTGCCAG 584 37 100.0 36 ..................................... TCTCCTCAATTGTCATCCTCGTGAGCGTCACAGAAA 511 37 100.0 36 ..................................... CCTTCATTGACCAATTCAAACTCAGGATACCAGTCA 438 37 100.0 33 ..................................... GCATCACATACCACGCCACGCTGAGCACGATAG 368 37 100.0 36 ..................................... GGGCATAGCACTCTTTAGGAAGAGCGGAAAAATCCA 295 37 100.0 36 ..................................... AGGCGGCGCGATTGCGTTCACGCCGCAACGTAGCGA 222 37 100.0 35 ..................................... ACCACCTACCATGTCAATCCAGACGGCCAACCCAT 150 37 100.0 36 ..................................... ATGCACCGGTGTAGGCACGCGGTAACGTCCCGCGCC 77 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 233 37 100.0 37 GTTCCAAAAGCCCCAAATCCGCCCGGCGGATTGAAAC # Left flank : CGCCATGCCACCAGCATCAGAAGAGACAACCCTCTACATCATCGCCTACGACATCCCAGACGACAAACGACGCACCAAGATCCACCGAACACTCTGTGGTTACGGAGCCTGGACACAATACTCCCTCTTCGAGTGTTGGCTCAACAAGCGCCAAATTCTGGAACTACAAGCCAAACTAGCCAAACACATCATCCCCAATCGTGACAGCATTCGGTTCTACGCACTCTGCGGAAGCTGCCAAAACAAAGTCATCACCATCGGCAGCGACCGCCCGCACGACCCAATCACCGTCATTTTATGACCCAACCGAAGATCGAGCGGCGAAGCACAAGGCAAAACCCCAGGAGTCGCTCGCACTGTAAAACAAGGCTTCCCAATGCGATACAAACTATGGTACACTAGAGGCATGGGTTCAAATTGCAGGCTTGGAAGCAGGACTTCAAGCAGCCGCTCGAAACAGGCGCATTTCATGGCATTCCAACGCGCTTGCGAGCAGCGCG # Right flank : CGGCTACGCGGGCTGCGCTCCCTCGCGCTCGATCCGCTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAAAAGCCCCAAATCCGCCCGGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //