Array 1 2990-2411 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AEKK01000002.1 Lactobacillus iners LEAF 3008A-a contig00034, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      2989	    29	 100.0	    32	.............................	ACTTCAGACGTTATCCAAACGGCAAATTTTAT	
      2928	    29	 100.0	    32	.............................	TACATCAAATTGTTTCCTAGCGGATTCTTCAA	
      2867	    29	 100.0	    32	.............................	ACACCAACTGAAAAGCGAGATACAATAATTAG	
      2806	    29	 100.0	    32	.............................	GAGTGGGAAAGCCTAAAAAGTAAGTTTAAAAC	
      2745	    29	  93.1	    32	............G...............C	GCAGAAAGCACATTAAAAAACGCTAGCGATAA	
      2684	    29	 100.0	    32	.............................	GTGGCAAAGTCAGTATTAGATGCTTTAAATCC	
      2623	    29	 100.0	    32	.............................	AAAATTGCTGAAATCAACACAGACTGGGAACA	
      2562	    29	 100.0	    32	.............................	AAAACCGCAGCAATTGATCAAGATATTAAAAG	
      2501	    29	 100.0	    32	.............................	GATGTCAACAGAAGAGCTTTATAAACAAATAC	
      2440	    29	  82.8	     0	....................T.A...TTA	|                               	C [2414]
==========	======	======	======	=============================	================================	==================
        10	    29	  97.6	    32	GTATTTCCCGCACATGCGGGGGTGATCCT	                                	       

# Left flank :   GTGCTATAAAAATTGCCAAAAATATTGAGGAATATTCATGTATTGTTAAACAGAATATTACACTACCTAATGCAATTAAGATTTTAACTGGAATAAGCGATGCAGAACTAAAAACTGGTAAAGATGAGTCTGTAGCAATTAAAGAGTTATGTACGTTTATTGGAGATAAGGCATTAGTTGGCTATAATGTTAATTTTGATATCAGGTTTATCAATGAAGCATTAAAACGTAACGGACAATCTCAATTAACGAACAAAGTATATGATGTCATGAAATATGTAAAACGTGATAAGATGTTTTTAAAGAACTACAAGTTGGATACAGTATTAAGTGAATACGGAATAAATATTAAAGTACCACATAGAGCGATTGAAGATGTAAAAATAATACGACTTCTTATTAGCAAATTAGATGGATTAACTAATAAATTGAAAATTCAAAAGTGAATGAAAAAATGGTATCCTTAAATTGCAGGTAGCGTCATAGATGGATCTTTTAGT
# Right flank :  AAAACACTTCCATATTTTTCTTTACAAAATTTAGGCAATATATCATAATATGTTTAATTTAGGAGTAAGCATGTTGTTTTTAGTTTTGGCTTGCTTTTTTCTTAATATTGTACTTTCCGTACATGCTGTGGATAATAAAGTTATTTTTTATAATTAAAAGAAGAAAGGTAACATATATAATGGGAAGAGAGCTTATGGGGTTGGCTAGTTGTGATGATGATCGCAAAGCGATTATCAATTTTACTATAGTAGCTGCCAAATATTTTAACGATCAAGTTACAGTTGAAAAAATTAATGATAGTTTGAAGGAACATAGTCAAGCCCCTTTGACAGAAGAAGAGAAAAAATTTTATGGGGTAAAATAATTTTTGCCAAGTACTCTCTATTTTTATCGAGTATTGTTATCATGAAAAATAAAAGCACTAATTTTAATATGTATGCGTGTTATAGAATACATATCGAAATCAGTGCTTTTTTTGTGATTTGAAATTTTTTATTTA

# Questionable array : NO	 Score: 6.14
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTTCCCGCACATGCGGGGGTGATCCT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-9.80,-9.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [6-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.64,4.91   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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