Array 1 2990-2411 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEKK01000002.1 Lactobacillus iners LEAF 3008A-a contig00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2989 29 100.0 32 ............................. ACTTCAGACGTTATCCAAACGGCAAATTTTAT 2928 29 100.0 32 ............................. TACATCAAATTGTTTCCTAGCGGATTCTTCAA 2867 29 100.0 32 ............................. ACACCAACTGAAAAGCGAGATACAATAATTAG 2806 29 100.0 32 ............................. GAGTGGGAAAGCCTAAAAAGTAAGTTTAAAAC 2745 29 93.1 32 ............G...............C GCAGAAAGCACATTAAAAAACGCTAGCGATAA 2684 29 100.0 32 ............................. GTGGCAAAGTCAGTATTAGATGCTTTAAATCC 2623 29 100.0 32 ............................. AAAATTGCTGAAATCAACACAGACTGGGAACA 2562 29 100.0 32 ............................. AAAACCGCAGCAATTGATCAAGATATTAAAAG 2501 29 100.0 32 ............................. GATGTCAACAGAAGAGCTTTATAAACAAATAC 2440 29 82.8 0 ....................T.A...TTA | C [2414] ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTATTTCCCGCACATGCGGGGGTGATCCT # Left flank : GTGCTATAAAAATTGCCAAAAATATTGAGGAATATTCATGTATTGTTAAACAGAATATTACACTACCTAATGCAATTAAGATTTTAACTGGAATAAGCGATGCAGAACTAAAAACTGGTAAAGATGAGTCTGTAGCAATTAAAGAGTTATGTACGTTTATTGGAGATAAGGCATTAGTTGGCTATAATGTTAATTTTGATATCAGGTTTATCAATGAAGCATTAAAACGTAACGGACAATCTCAATTAACGAACAAAGTATATGATGTCATGAAATATGTAAAACGTGATAAGATGTTTTTAAAGAACTACAAGTTGGATACAGTATTAAGTGAATACGGAATAAATATTAAAGTACCACATAGAGCGATTGAAGATGTAAAAATAATACGACTTCTTATTAGCAAATTAGATGGATTAACTAATAAATTGAAAATTCAAAAGTGAATGAAAAAATGGTATCCTTAAATTGCAGGTAGCGTCATAGATGGATCTTTTAGT # Right flank : AAAACACTTCCATATTTTTCTTTACAAAATTTAGGCAATATATCATAATATGTTTAATTTAGGAGTAAGCATGTTGTTTTTAGTTTTGGCTTGCTTTTTTCTTAATATTGTACTTTCCGTACATGCTGTGGATAATAAAGTTATTTTTTATAATTAAAAGAAGAAAGGTAACATATATAATGGGAAGAGAGCTTATGGGGTTGGCTAGTTGTGATGATGATCGCAAAGCGATTATCAATTTTACTATAGTAGCTGCCAAATATTTTAACGATCAAGTTACAGTTGAAAAAATTAATGATAGTTTGAAGGAACATAGTCAAGCCCCTTTGACAGAAGAAGAGAAAAAATTTTATGGGGTAAAATAATTTTTGCCAAGTACTCTCTATTTTTATCGAGTATTGTTATCATGAAAAATAAAAGCACTAATTTTAATATGTATGCGTGTTATAGAATACATATCGAAATCAGTGCTTTTTTTGTGATTTGAAATTTTTTATTTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //