Array 1 20082-18040 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAH010000140.1 Salmonella enterica isolate 9710_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20081 29 100.0 32 ............................. AATAACATCCTCAGCATTTATCCAGTCAAGAG 20020 29 100.0 32 ............................. CCGGAAGAGTTCTGTCATCGGCAATTGATTGC 19959 29 100.0 32 ............................. TGAAAGGGAATCCGTGTAGGGGGATACGAAAA 19898 29 100.0 32 ............................. CTGTATGAATTGCCCTTGCTGCCCGGCTCTTC 19837 29 100.0 32 ............................. ACGCGGGTGCCGAGCGGGGTCGTTAAAATATC 19776 29 100.0 32 ............................. GCAGTGTTAGAGCCGTAAGTGACGCAGCAATC 19715 29 100.0 32 ............................. AATCCACATATGTGAAACTCCAAGGAGGTTTG 19654 29 100.0 32 ............................. GCCGTTACTGAGCGCAGCGGGTTAGAGGTAAA 19593 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 19531 29 100.0 32 ............................. CAGTTATTTGACAATTGGTACTGGCATTAAAT 19470 29 100.0 32 ............................. TGCAATTCATCACTTAAAAACAAAGAAAATGA 19409 29 100.0 32 ............................. CTGAATATGTGACCGCCGAAGGGGCCGAGAAT 19348 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 19287 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 19226 29 100.0 32 ............................. ACTCGCGAATAATCGGAAACCAGCCACCATCC 19165 29 96.6 33 .......T..................... ACGGACAATGACGCGGCAAATAACCACACAGGC 19103 29 100.0 32 ............................. TGAATATTGGTGAGCGCCAGTACCCTCAAGAG 19042 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 18981 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 18920 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 18859 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 18798 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 18737 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 18676 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 18618 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 18557 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 18496 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 18435 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 18374 29 96.6 32 .............T............... ACCTATATGCGCGCCACGGGTAAGACCTGGGA 18313 29 96.6 32 .............T............... CCGCGCTGACCGCAGAGGTTGCGCAGCAGTTA 18252 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 18191 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 18130 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18069 29 93.1 0 A...........T................ | A [18042] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37856-36364 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAH010000140.1 Salmonella enterica isolate 9710_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37855 29 96.6 32 ............................C GGCGCTAAAAGATTTTGAGGAAAAAGTTAATC 37794 29 100.0 32 ............................. GCGATTACGGCGAAATAGCGCCTTATGTCGCT 37733 29 100.0 32 ............................. ATGATTTTGGCTTTTTCCAGCCATCAGATATT 37672 29 100.0 32 ............................. AATAGCGGCAGGGGGTACGAGGGTTATTTTTT 37611 29 100.0 32 ............................. GCAGTTCGGAGACCAGGAATATACCGCCGCAC 37550 29 100.0 32 ............................. CCGACTCATATCAGGTAGCGTGCGCTAACGCT 37489 29 100.0 32 ............................. GAACAATGGCTGACAGAAGCTGCGGAAACGTA 37428 29 100.0 32 ............................. CGGTTGCTACCGAACTGGAGCTGTGGGCGCTG 37367 29 100.0 32 ............................. CACTGGATTTGAATTATTTATTTCACTTTCAA 37306 29 100.0 32 ............................. GACTCGGTCTGTTTTTTGATTTTGGCAATCAG 37245 29 100.0 32 ............................. GACGTCGCTATTGATCGGGAAAAGGAGCGTCG 37184 29 100.0 32 ............................. ATCCGCTCCATGTCTTCGGGCAGTTGGCTACA 37123 29 100.0 32 ............................. CGCATTATGATAAAGTTCCCGCCCGTAACTCA 37062 29 100.0 32 ............................. TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 37001 29 100.0 32 ............................. AGATGGTAAAGGTGCTGGTCGCCGCGACTGCT 36940 29 100.0 32 ............................. TCGAAACTACGCACGCCGTGTGCCGTGGGGAG 36879 29 100.0 32 ............................. GCCAGCGCTGGCGCGCTCGCGAAATGGGAACC 36818 29 100.0 32 ............................. TGATTATTCCAGGGAGAGGCGGACCGAAAAAC 36757 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 36696 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 36635 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 36574 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 36513 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 36452 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 36391 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAAACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //