Array 1 109506-107765 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOK01000015.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM N51304 N51304_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109505 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 109444 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 109383 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 109322 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 109261 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 109200 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 109139 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 109078 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 109017 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 108956 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 108895 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 108833 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 108772 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 108711 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 108649 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 108588 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 108527 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 108466 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 108405 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 108344 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 108283 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 108222 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 108161 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 108100 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 108039 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 107978 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 107917 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 107855 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107794 29 96.6 0 A............................ | A [107767] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119308-118240 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOK01000015.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM N51304 N51304_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119307 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 119246 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 119185 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 119124 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 119062 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 119000 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 118939 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 118878 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 118817 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 118756 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 118695 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 118634 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 118572 29 100.0 32 ............................. GGGTTTGGGGGCACTATGAAGGGATCGATGCT 118511 29 93.1 32 .........C..T................ GAGTTTGGGGGCACTATGAAGGGATCGATGCT 118450 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 118389 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 118328 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 118267 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //