Array 1 91554-91062 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDGT01000022.1 Streptomyces sedi strain JCM 16909 NODE_22_length_113796_cov_55.379057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================== ================== 91553 29 100.0 32 ............................. GACATGTTCGCCCGATGAGCCAGACCTCCGAC 91492 29 100.0 32 ............................. GAGGGGCTGACCCTCGCGCAGCTCCGCGAACT 91431 29 100.0 32 ............................. CCGCAGGTGGTGCAGATGCCGCTGGTGGAGGG 91370 29 96.6 32 .C........................... GACCACGACCGGGCCCCCTCGGTGTCCTGGTC 91309 29 100.0 32 ............................. AAGACACCCGCCCGAATCCTCCGGGAGATCGC 91248 29 93.1 130 .....................AC...... ACGGTCACGGCCGCCCACGCGGCGCAGCGGATGCAGTGCCGCCCCCGCGCACCCCGGTGTGGTGACCGTGGTGTGGCCGTCGCGCCCCCCGAACCGTTGGGGGCGCGGCGGCGTGGCTACAGCAGTTCCC 91089 28 69.0 0 ....C.A........TGT...-C..CG.. | ========== ====== ====== ====== ============================= ================================================================================================================================== ================== 7 29 94.1 48 GTAGTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CTGCGCGCGGCGGCAGCGGCGGTGGCACCGGGCGGCACGCTGCTGATCGAGGCCCACGGCGGGCTCCCGCCGTGGCAGGACGAGATCAGCGACATCCACTTCCCGACGCCGGAGGAGACCGTCGCCTCGTTGGAGTTGGCGCCGGGCGCATGGGAGATCCTCCTCGCCGAACGCCACCCGCGCCAGCAGACCCACCCCCACACGGGCGAGACCGTCACCCGCACCGACCAGACGGTCAAGGCCCGCCGCCGAGCGGGGTGAAGGCAGGTGGGGGTGGCCCGTTGAACGATGAGACGTTGGCCGCCGCGCCGAGACAAGGCGGCCGACGGGCCCCCACACAACACCGCCGGGTTCCCGCCGGGGGCTACGAGCCGTCGGTAAGCTAAACCACCGTATCCCGCCCCCAGTTGGGAGCCCTAGCCTTGCCCACGGACCCCGCCCACCCCGCGCCGGCAGGCAAAAGGACGGCAAACCCGACCTAACACCCCCGGTCAAGAAGG # Right flank : GTAGGCCGTCGTCAGCGACATGCTCGGGAAGACGCGGTCCCAGGTGTCCGCGCGGCAGACGGCGGCCACGCGGCAGGCGACCGTCGCGAGGGTGCGCAGCTCGGGGAGGCCGGTGCCGCGTTCCGCCCAGGCGTCGAGGTAGGCGTCCCATGCTCGGGTGCGGGCCGCCGGGTCGCGGTCGAAGCGTTCGTCGAGGACGCGGCCGACGACCAGCAGGCTGGCGAAGGGGTGGGTGACGGAGGAGTCGCCCCAGTCGAAGAAGAGATAGCCGCCGTCGCCGGTCAGCGCGCCCGTCGGGGTGAGGTGTTGGCCGCCGGTGAGGACCGAGGCGGGGTGGAGGTCGGACTGGTCGAGCGAGCAGGCGACGGGGGAGTCCGCGAGGAGTTGGCACCACTCCTCGAAGCGGGGGGTCGCCGCGCGCAGCGTCTCGCGTTCGGAGTCACGGAGGCCGCCGGCGGTCTCGACGAGGCAGCGGTAGCGTTCGACGAGGCGCGACGGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 177125-177641 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDGT01000001.1 Streptomyces sedi strain JCM 16909 NODE_1_length_705547_cov_54.804003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177125 29 96.6 32 ............................T ACGGTCCTTCGTCCACGGCTGCACCGTGCGGG 177186 29 100.0 32 ............................. GGCTGGTGTCCCGCTCACGGCGGCGGGCCTCC 177247 29 96.6 33 ............................T GTCCCGGGCCACGTACTCGCCCGCACCCTCCGA 177309 29 100.0 32 ............................. GGGGAGCTGCGCCTGCTCCTCACCCGCCCGCT 177370 29 96.6 32 ............................A GGTCCGCTGGTCAACCCGAGTCGATTGGTACG 177431 29 100.0 32 ............................. TCGATGCTCACTCCGTGCCTCCGGGCAAGCAG 177492 29 100.0 32 ............................. TGGGCCATGGGCCGTGTACCTGACCAACGACC 177553 29 93.1 32 ........................A...G CCGCAGTGGGTATACGACTGGCAGGACGCGTT 177614 28 72.4 0 ..A........-GTT......G..CC... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.0 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CGCCGCAACGCGAATCCGTACCCGCACGCCCACCCCCAGGTGTCCGAACTCCGGTCCCCCCGCTTCGTCTTGATGGTGCCACGGCCGGGGCGTCGCAGCGTGCCGCTCACTCCTGCTCCGCGAGCGAGCACGCCGTGACGGTGAGCGTGGCCGCGTCCGTCTTCCTTCCCACCACGGCGATCGAACGCTACGGCGGGCCCGAGCAGATCGCCGCGGGCGACCTCTTCCTCGCCAGCCTCAGGCGTCCCACGCCACCAGCCCGGATGCGCTGGCCGCGCGGCGCGGCGCGGCGCGGGGTGGGGCGGGGTGGCGGGGCGCCGCCCGCCCGCCGCAGGGCGGGCGGCCACGCGACTAAGCTGGCGGCGGCGGCCGTTGGCTAAGCGACAGAGTGGGAGGAAGCCGTGACGCCTCGGAACAGCGGTGAGCGCGGCCGAGTTGGACCTGAAGGTAAAGTAAGTAAAATCCACCACCCCCACCGATAAACCGGCAGGTCACGAACC # Right flank : CGGCCCGGGCCGGCGCCTGGGGCGCCCCGACCGTCGGTCAGATGAAGGCGGATTCGGGGCGGTCGGTGTTGATGAGGAGGGGGAGGCGGCGGCGTTGGCCGGTGGCGATGATGGCGTACTGGTAAAGGGCCGGGGGCTCGTACAGCTCCCGCATCGGGACCCAACTCGCCCCCTCCTTCGGGTCCCTGGACGGCACGTCCGGGAGGACGCCGCCGTCCAGGACGTACGTCAGCCCGTTGAGCGTGCCTTCGTCGTCCGTCGTCGGAGTCACCGCCACCACCTCCGACAACGCCCGTTCGCAACCCGTCGCCTCAAGGAACGCCTCGCGGGCGGTCAGGATGATGCAACGGCCGGGCGGCACCTGGCCGTTGGGCAGGATCCACCCCTCCTGGCCGTCCTCCCGCAGACCGCGCACCATCAGCATGTGGTTGCTCTGCGTCGTGGCCAGCACATGGAATGTGATCGGGATCGGGGAGTGGTTGATAGTGGTCAACATGACT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19614-17882 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDGT01000027.1 Streptomyces sedi strain JCM 16909 NODE_27_length_73184_cov_57.268735, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19613 29 100.0 32 ............................. ATGTAGTGCGCCGCTGGTTGTTGCATTCAGAA 19552 29 100.0 32 ............................. CCACCACGGGCGGGCGACGTGCGCCCGGTCCA 19491 29 100.0 32 ............................. CAGGCGAGACGGCCCTCGCGGGTGCCGTTGAT 19430 29 100.0 32 ............................. CGCCCCGGGGAGGATTTGAACCTCTCCCGGGG 19369 29 100.0 32 ............................. GCTCTGTATTGGGAGAACCAGGGACGGGTTGA 19308 29 100.0 32 ............................. TTCTTCAGGTACCGGTCATCCCCGACAGAGGC 19247 29 100.0 32 ............................. GTGTTCAACTCGCTGGGACTCACGAAGTCCAC 19186 29 100.0 32 ............................. CGGTCATGAGGCCCGAATTCACCCGGGCCGTA 19125 29 100.0 32 ............................. CGAGTAGCCCGCGTTAAGCGCCGTGATGGCTA 19064 29 100.0 32 ............................. CCGCTCGTTACGAGATGACGATCGAGGCGGAA 19003 29 96.6 32 ............................T TCGGGGAGCGCGCACCATCAATTCCCCGACGG 18942 29 96.6 32 ........................C.... TCGGTGTTCCAGTGGCGCCAGCGGCCGGTGGT 18881 29 100.0 32 ............................. TTGCGGGACCAGGTGATGTGCTGGTCGTCGGC 18820 29 100.0 32 ............................. CTCGATCGCTGGTTACGCGTCGCGCATCGCGT 18759 29 96.6 32 ......................C...... TTGTGGACTTCGTAACTCGTCCGAGGGCGGAC 18698 29 100.0 32 ............................. CGCCGTGGCGTCCCGGGACTTCGAGCCGTCGA 18637 29 100.0 32 ............................. ATGCGCAACCCGGCGGGTCGGCCGTGGGCGGC 18576 29 96.6 32 ........................C.... ACGGCGGCGCGATCGGCATGGAGATGACCCGC 18515 29 96.6 32 ............................T TCATGACTTCCCCCGTTGACCCGTCGCTGGTC 18454 29 100.0 32 ............................. CCCTACCCGGAGGCCCACTTCGCGGTCTGGCC 18393 29 96.6 32 .................A........... CCATGCTTCTTGGGCGGCGGCATTCCCGGAAT 18332 29 100.0 33 ............................. CGGGTCAGCACCGCGGCTGGCCCCGTACCCCGG 18270 29 96.6 32 T............................ GCAAGCTCCGCCCCGGGGTGGCCCCCCTCGTG 18209 29 96.6 32 .................T........... CAGACGCCTGCCTGGCTGACGTCTGACACACC 18148 29 96.6 32 ............................A CGCATCGCGCGGCCGATCTCCTCCGGTTGGAG 18087 28 86.2 32 ...T.......-...A........C.... TTGGCCGCCCAGCTGCGGTACGAGATCCTGTC 18027 28 89.7 31 .................-........T.A AGAAAGGGAGGGATTGAGCACGTGGAGCCCT 17968 29 100.0 30 ............................. CCCGCCGCCCCCACGCGCCACCGTTCCGCA 17909 28 82.8 0 ...G..........C.-....A......C | ========== ====== ====== ====== ============================= ================================= ================== 29 29 97.5 32 GTCCTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : ACGCAGCCGCTGGAGTAACCCCCCGCCTCCCGACCACACCGGTTGGCGAGCGGCGCGCACCATCGCTCAGTGAGCGCCAGCGGACCTCAACCGCCTGCGCCGCTGCCACGGCCGCCCACGAACGCTCCGCGCCGCGCCCCGCCATCCCGGCTTGTGCTCAGCCCTTCTCCCCCATACCTCGCGTTGCCGGGACACTCTCCGGCCGGCCGCCGCGGCACCCGAGCCCACCGCACTGTCACCGGGCCTCGGGACGAGGTCGACCGCAAGGACAGTTGACGGGGGGCGCCGTCAACCCGACGCCGCAGCAAGCTGGTTGAAAGACCGCCGGCGTTCGCAGCACCCCTGTCAGCGGCTGGCGATAACCTCGTTCGGACAGCTCACTCCACCACCAACAACGAGGCCCTACCATGCCGCCGTCTCTGAGACGCAGGCTCGCCACACCCCCGCCGACGCTTGGCAAAGCAATGGCAAAGCCCCTCTAACGCCGCAGGTCAAAAAGG # Right flank : GTCGGCGGTATCGCGGGAAAGTTGCCGCCGCACCGATCTCCGTCTGCGTCTCCGCCGCAGCGTCGGCACGATTCGGCGCACGGCCGAACCATCTTCAGCGCCTTCACTCCTCGTTCGCGCGGACGGACGCAATCTGTCAGACGGCCGCAGGGGAACGTCATGACTGACTCAGAGCAGAGCACCAAGATGCGGGTGGCCAAGGAGCGCTTCGACCGGCTGCGTGCCGACCTCCCCGCGCGCGAGGCGCGTCGCAACAGCTTGGTGGTCGATGCACACGTGGATCCGCTCAGCGAAGAGGAACTACGCGCGCGCGCCGCTCGCAGGGCTCGCGGAGAGCGGAATCCGCCCGTGCCCGGCCGTGGGCGGCGCGCGGCGATCGCCCGGCTGATCGGGCAGACCGAGCGCAACGTCCGCAACCTGTACGAAGCCGAGATCGCGGCGCGCGCGACAGCCGGCTCGCCGGGGCGAATTCGTCAGCCGGACGACGCCTTCGACCGGCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17252-14480 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDGT01000026.1 Streptomyces sedi strain JCM 16909 NODE_26_length_94234_cov_55.603951, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17251 29 100.0 32 ............................. GCCGCGAGATGGCGCACAGCATGGCCCAGAAC 17190 29 100.0 32 ............................. TCCGGAGCCACGGCCGCCGGCTACCGGGGCGT 17129 29 100.0 32 ............................. TTGGTGGGCTTCGCCACGGTCGCCGGCAACAA 17068 29 100.0 32 ............................. GGTCCCTGCTTCCCGCTCTGTCGCAGATGTTC 17007 29 96.6 32 ............................T TGGCCGCGTTGGGCAGGATGCCGCGCATGGCC 16946 29 96.6 32 .................A........... TCGGCACCAGGCACCAAATCCAGTGCGTTTCC 16885 29 100.0 32 ............................. TAGCTGGTTGACGCACTGAGTGGCTTCTCCTC 16824 29 100.0 32 ............................. GCGCCGTCGCTGGCGGCGTCGGTGATGGTGAT 16763 29 100.0 32 ............................. AGGAAGGGGGCGCCGAGCATTACTCGGCGCCC 16702 29 100.0 32 ............................. CCCGGGTCGAACCGCGCGCTCAAACGGGCAGC 16641 29 100.0 33 ............................. CAGAACAGGAAGGCGCAGGGCTGATGGCTCGGA 16579 29 100.0 32 ............................. CCCCGACGTGGGTGGCGCTCATCAGCTACCTG 16518 29 100.0 32 ............................. CACCAGCGTGCTGGCGCAGTTCACGCTCCTGT 16457 29 100.0 32 ............................. GTGCTGGAGGGCATCGCGGCCGGGGAACATGT 16396 29 100.0 32 ............................. AGCTACAGCCTGGCCGTGCTGACGGAGGTATG 16335 29 100.0 32 ............................. CGCTTCTCGGCCGCCAGCTCGGCACCGGTCTG 16274 29 96.6 32 ............................T CGGGCACGCCTGGTCGGCCGTGCGGACGGCTG 16213 29 96.6 32 ............................T CCAGCCCGCGCCGAGGAGCTGCTGAACGTGGC 16152 29 100.0 32 ............................. CTGGTGAAGAGGACGAGGCAGACGCTCGCCGC 16091 29 100.0 32 ............................. CGGGATGGGTCCAGGCCGCTGAGTGGCTGGCC 16030 29 100.0 32 ............................. CTGGAGCAGGCGGAACACCACGGAGGCGAGAT 15969 29 100.0 32 ............................. TTTCTCTACTTCATCAAGGCCGGCCGGCTTCG 15908 29 100.0 32 ............................. GCGCGGGGTTCTTCGTTCGCGTCTTCCATCCC 15847 29 100.0 32 ............................. AGGCCCGCACCGGTTCGCTCGGTGCGGGCCCT 15786 29 96.6 32 ....................A........ GGACGATTGGCGCGGTCGGGTCCGGTGGTGCC 15725 29 100.0 32 ............................. ACGTGCACCCGGACGACGCCGAGCAGGCCGCC 15664 29 100.0 32 ............................. TACCTCGGTACGTGGAACGCCGCTATCGCCAA 15603 29 100.0 32 ............................. CGCCTCTACCCTGAGGTACGGCGGATTCTGGA 15542 29 100.0 32 ............................. ACTGGGGCGCGGCTGGGTCCGGGGCGCCGGGC 15481 29 100.0 32 ............................. TCATCTGCGCTACGGGCGTACCGACGCGTAGT 15420 29 100.0 32 ............................. CGCGGCTGGCCACCGGAATGGGCGGGGCGACC 15359 29 96.6 32 ............................T GGAGCGCGCCATCACCGAGGCCACCGGCATCC 15298 29 100.0 32 ............................. CTTGATTCACACTGCGACTTCTTCTGCGACGC 15237 29 100.0 32 ............................. GCCCGCTACGTCCACCGGACGCACGTATCTGA 15176 29 100.0 32 ............................. CGACTGGGCGCGCAACTCAAAGCGGCCCGCGT 15115 29 100.0 32 ............................. TCGCCCATGTAACCGACGAAATCGCTGTCGCC 15054 29 100.0 32 ............................. TCACCACCCAGCGGGCCGCCGAACGCGCCCTG 14993 27 89.7 32 ........--..................T TGGTAGCCCGGTGCCATTCGGCGTAGAGGCGC 14934 29 100.0 32 ............................. CCGCCGAGGTGCTGGGGGCGGCCGGCGGCTCG 14873 29 100.0 32 ............................. GCGACCGTCCCTCTGGAGGCGTGATGCCGACC 14812 29 100.0 32 ............................. CCCTGCTGCCGTCCTCTGCGGCGCCGGGTAGG 14751 29 96.6 32 ............T................ GGAGGTACGCGGGTGCCATCGACGGTGTCACC 14690 29 100.0 32 ............................. GGGGCGGAGGCTTGGAACCTCTACCGTGAGGC 14629 29 96.6 32 .............C............... ACCCGCACGACCCGGGCGCCGGCCCGGGAGAG 14568 29 96.6 31 ..A.......................... CGGTTGGTGCCTTTGGCCACGGCGATCTGCA 14508 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.0 32 GTGCTCTCCGCGCGAGCGGAGGTGGTCCG # Left flank : CGTCGCCACTCTGAGTCGCTCGTCAGTCACGGGGGTATCGAAGCAAGCCCCACTGACAATCGAGCCCTACGAAGCGGGTTCCGGACGCCTACGGGGGCTCGACAGCGACTAACTTCCGGCCATACACGGAAAGATCACCATGCGGCCGTCACCACCTGAACGATCACACGGACTCTTAGTGACCAGCCGTGAAGTGCCCAATCGCTGCGAACGAGCGCCGGAGGCGGTGTTCACCACCGTCGTTTTCGAGACAAACGCCAGGGAAAATCGACTCCTGCCGCTCACGTCCAGAAAACATCCCTATCGCACGGTCGTTGCCGTATAGCCCCCGTGTACGACAGGCCTCGCCGACGACGCACGCCACCCACACTTTGGAACCCGGCACGGCGCATCAAACGGCGCCTAGACTCACGGGCATGAGTAGCAGGACCGACCAGAGGCGTGCGGTCGCCGACGGTAAAGGAATGGCAAACCGCCTCTAACGCCGCAGGTCAAAAAGG # Right flank : GCTGGCTGCGGGAGAAAGGGCAGCCGTGCCGGGCTCCGCGAGTAGCCGCAACGAAGTCTGCGCCCTTCCTCCTACCACCCACCAACCAACGCTGCTCACCATCGCCGGTGAGGGCTGGCAACGCGACCACGGTGGGCGGTCTACGTGGCGGGTGGTCGGCCGGGTGCGGGTTCAGCGGATGGCCGCAAGAAGGCGGCTGGGAGGGGAGGGCGGCTCCCGGGATCCGTGGTCGTTGTCGAGCGGGGATCGGCCCTTGCGGCCGTGCCATCCGGGCGCCATGACCGCGTCGATGCCGGAGGCCGGTCGGCCGGTGGGGGCGGGCGTGGCGCGCACCCGGCTGCGCCGGGCCTGCCCCGGCGCAGCGCCGTCCCGGGCCCAACCCAGCGCTGGACTACCCGAGGAGTGGCGCGGCAGACGGCGCCCACACGAGGTATCCGGGTCTCAGCAGGTCAACGACCACGCTGCCGCGTGAACATATTCCCAGTCGACATATCCCGCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27310-28010 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDGT01000026.1 Streptomyces sedi strain JCM 16909 NODE_26_length_94234_cov_55.603951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27310 29 100.0 32 ............................. ACCTGCTCTACGGGGTGTGGGCGGACGCGGTC 27371 29 100.0 32 ............................. GCGGTCCTACACGCGCTGGCCGATATCGACTT 27432 29 100.0 32 ............................. TCGCACAGCGGCCTCCTGCGCCTCCTGCCCCT 27493 29 100.0 32 ............................. GCGAGCAATTCGTGGGAGGCGGGCATGTGGAT 27554 29 100.0 32 ............................. AGACCGGCATCCGCGTGCCGACGGACGACCTG 27615 29 100.0 32 ............................. GAGGATCCGGCAAATCCACCATCATCGCCCAC 27676 29 100.0 32 ............................. ACGATCGATCGCCTCGCCACAGCCTTGGGGGC 27737 29 100.0 32 ............................. CGCGTGGTGGCGCCTTGGCTGTCGCAGCGTGC 27798 29 100.0 32 ............................. GTGGAGGAGAGATCTCTGCGACTCACGCAAGC 27859 29 100.0 32 ............................. TCCCATGAGACTTACAAGACATGGGGTACCCA 27920 29 93.1 32 ..............G.T............ CCGTCCGTCTCCCGCTTCAGCCCGCCGATCTG 27981 29 79.3 0 ..............C.G..G.CA...G.. | A [28002] ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGCTCTCCGCGCGAGCGGAGGTGGTCCG # Left flank : GCAACTGCTGGACCCGTCGGGGGAGTACGAGGCCGAGGACCCGGACGAGCAGCTTGTCGACCTCTGGGACCCGATCGCGGGCGCCATCCCCGGCGGGATCAACCACGGGTTGGCGACGTGAGCCCCGGTGGCGGGGCACCGGTTCCCGGGCCGGAAGGAGGGCCGTCTCCGTGGCATCCATGATCGTGATCTCGGCGACGGCGGTCCCCGACCACCTTCGCGGCGCCCTCAGCCGCTGGCTGCTGGAGGTGACCCCGCAGCTCTACGTCGGCACGGTCTCGGCCCGCGTCCGCGACGAGCTGTGGACCTCGGTCAGCGCCAGCATCGCCGGCGGCACGGCGGTCCTCGCCTACCCCGACGCCAACGAACAGGGTTTCACGCTGCGCACGGCGGGAACGCGTCGCCGACACCCGCTGGACTTCGACGGGTTGACGCTGATCGGCTTCCGGAAGGAGCGTCAAGAAACGGCAAAGCCGTTCTGACGTCGCAGGTCGCGAAGG # Right flank : GGCAACGACACCCTCAACCGCAGCGCGGGAACACCCCGCTCGCGCGGGGAGGCCCCGCTCCGCCTCGGTAGGTGCCGGCTCGGATGCGGAACACCCCCGCTCGCGCGGGGAGGACCCCCGGGCCGACCGCCCCGGCGACTACGCCCGCGGAACACCCCCGCTCGCGCGGGGAGGACGTCCACTCCTTCCCCCGTGAGGCCCGTTCCTGCGGAACACCCCCGCTCGCGCGGGGAGGACCTACGGATCGTCCGGTGCAGGCTCGCCATCCCCGGAACACCCCCGCTCGCGCGGGGAGGACCCGGAACGCTGCTGGGGCACCCGCTCAACCGCCGGAACGCCCCCGCTCGCGCGGGGAGGACCAACTATGAGTGATGGCCCGAAGGCGTGTCGCCGGAACACCCCCGCTCGCGCGGGGAGAACCCGCCCACCAACTGGCGGCCGCCACCACCCAACGGAACACCCCCGCTCGCGCGGGGAGGACGCTCGGACGACGGAGCGCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 29894-28036 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDGT01000026.1 Streptomyces sedi strain JCM 16909 NODE_26_length_94234_cov_55.603951, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29893 29 100.0 32 ............................. GTGGTGTCGGTGCGGCAGCGAGCGGCCCGGCC 29832 29 100.0 32 ............................. ATCGAGCAGCTGCGTCGGACCGTCGAAGCGGC 29771 29 100.0 32 ............................. CACCCCTTCCCCCGGCACGCTCTTCGATCCCC 29710 29 100.0 32 ............................. TCGGTCTTCTTACCGAGGGTCAGGCTGGCGGT 29649 29 100.0 32 ............................. CGCGACCAAGCCCTCGTCCACCAGGCGGTGCA 29588 29 100.0 32 ............................. ACACCCTCACCGGCCTCATGACCCTCGCCGAG 29527 29 100.0 32 ............................. CTGAACGGGGAGACGGCCGCCGCTTCCTCGAT 29466 29 100.0 32 ............................. GCGGCGCTGAGGAAGGCCGCCGAGATCCTGTC 29405 29 100.0 32 ............................. CCTGGCTACGAGTCGAAGTCCCGGAGAAGGGC 29344 29 100.0 32 ............................. TTCGACCGGCGCGTGATCCGGGGCCATTCCCG 29283 29 100.0 32 ............................. GCCGTTCAGGAGGAGGAGCGCCGCACGGCCGG 29222 29 100.0 32 ............................. CCCCACCAGGGCGCTTCCTGGACCTACGCGGT 29161 29 100.0 32 ............................. CGACCCCTACTGGGTCGCAGAATTCCTCTATC 29100 29 100.0 32 ............................. AGGCCAACCGGCTCCTGGAGCGCGGCGCTCCG 29039 29 100.0 32 ............................. GATCGGAACCATCCACCTCCCCGAATCCCAGG 28978 29 100.0 32 ............................. TCCTGACGCGGGCGGGCGTCGTAGTGTCTGGC 28917 29 100.0 32 ............................. TTGTGCAGCGAGACATCCCCGCTGGCCCCAAT 28856 29 100.0 32 ............................. ACTCATCAGGTCCTCCCGAGGGCTATCGGTAC 28795 29 100.0 32 ............................. ACGTTCACCGGCGGCGCCAGCTGACCACCGAC 28734 29 100.0 32 ............................. CTGACTGTCCGCGCCTTCGGCACCGCCGCGCG 28673 29 100.0 32 ............................. GGAAACGGACATACTCCGCATCAGGTGATGAT 28612 29 100.0 32 ............................. AGATACGGGACATGAGTCCCCAGCAGCGGCTG 28551 29 100.0 32 ............................. GTCGACCAGCACCAGCGCTCCGTCGTCCGAGC 28490 29 100.0 32 ............................. TTGGGTGGTGGCGGCCGCCAGTTGGTGGGCGG 28429 29 96.6 32 ..T.......................... GCGACACGCCTTCGGGCCATCACTCATAGTTG 28368 29 96.6 32 ......................C...... GCGGTTGAGCGGGTGCCCCAGCAGCGTTCCGG 28307 29 100.0 32 ............................. GGGATGGCGAGCCTGCACCGGACGATCCGTAG 28246 29 100.0 32 ............................. CAGGAACGGGCCTCACGGGGGAAGGAGTGGAC 28185 29 100.0 32 ............................. CGGGCGTAGTCGCCGGGGCGGTCGGCCCGGGG 28124 29 100.0 32 ............................. CATCCGAGCCGGCACCTACCGAGGCGGAGCGG 28063 28 89.7 0 .G...................-......C | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.4 32 GTCCTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : TCCGGGCCACCTCCGCCCGCGCGTACAACACTGCGTTTGTTGGGTGACGTTGTCCCGATGCCGCGGACCTCCTCCGCCCGCGCGGAGAGCTCTCACTTCGAGATGTGCTCGATGCCCGGGCCCGCTACCCCCGCCCCTGCCCCCTCATCGGCGGTTACCTCCTTCTCCGCCCCGCCACCGAGATGCCCCGCGCCACCCACTCCGTGAGCGAGACGCCCCTGATAGCCCACCCACCTCACCTGGCTCTGCGCGCAACCGCTGAAGTGAACGTCGGGACGTGCCGTATCTCCTCCGACGTGGCGTGCTGGTGGAGCGTTGGCTCCTCGGGAACGTTCCGCCCTCACGTGTCAGCGGGTGGCGATAACCTCGAACGAACGGTCCCCCAACACCCACGACGAGGCCCCACCATGCCCTCCCCATCTGCGAGACACGCGCTTTCCCCTTCACACACGGCAGGCAAAGGAACGGCAAAGCCCTCCTGATAGCGCAGGTCAAAAAGG # Right flank : GCGCTGCGGTTGAGGGTGTCGTTGCCGCACCTGTCCCCCCGCGCGCGGAGAGCACCAGATCGGCGGGCTGAAGCGGGAGACGGACGGCGGACCACCTCCACCCGCGCGGAGAGCACTGGGTACCCCATGTCTTGTAAGTCTCATGGGACGGACCACCTCCGCTCGCGCGGAGAGCACGCTTGCGTGAGTCGCAGAGATCTCTCCTCCACCGGACCACCTCCGCTCGCGCGGAGAGCACGCACGCTGCGACAGCCAAGGCGCCACCACGCGCGGACCACCTCCGCTCGCGCGGAGAGCACGCCCCCAAGGCTGTGGCGAGGCGATCGATCGTCGGACCACCTCCGCTCGCGCGGAGAGCACGTGGGCGATGATGGTGGATTTGCCGGATCCTCCGGACCACCTCCGCTCGCGCGGAGAGCACCAGGTCGTCCGTCGGCACGCGGATGCCGGTCTCGGACCACCTCCGCTCGCGCGGAGAGCACATCCACATGCCCGCCTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 282165-281892 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDGT01000003.1 Streptomyces sedi strain JCM 16909 NODE_3_length_457801_cov_54.983195, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 282164 29 100.0 32 ............................. AGTATCCGGCCGCGACGCGGGTCGAGAAACTC 282103 29 96.6 32 ........T.................... GCCCGCGCTTGTGCGGCGAGGTCTGGAAGCCG 282042 29 100.0 32 ............................. TGCGACATGAGGCCGAACGCCTGCGCGCCGTC 281981 29 100.0 32 ............................. GTCGTGCGACGCCTCGAAGACCCGATGAACGA 281920 29 93.1 0 .................C...A....... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 CTGCTCCCCGCACGCGCGGGGGTGTTCCC # Left flank : CTTCGCCAAGGAGTCGATCGAGCTGGACCCCGAGGAGGTGATGGACTACCTACTCCCGATGACCGAGCCGGCGCGGGTGGAGGAGTTCACCTTCACCAGGGAATGGCTCCGCACCCAGGCGGCACGGATAGCCGACCCCCGCTCGGCGGCACACCAGTTGGGCCGACGCCTCAACCTGCCACCCTCCTATCTCCTGATCCACCGGGTGACGCTCTCCACCATCGGCGTCCTCTGCCAGCTGAACGCGACGGTCCGCCTACGCGACGAACTGATCGACGGCCTCCCCGGCTTCGCCGACCCCGACCTGCCGCCTCCGGCGAACGACGAGGACGGCGACGAGGCGGAGGCGGTCGCGGCGCCCAAGGCGGAGCCCGGTGCGGTGGAAGCGGAGGGCGAGCCGAACGGTCCGACGCTGACGAAGGCTGAACGAGCGGAGGGCCCGGCTGAGTAAAGTAAGCGAAGTCCGCCGAAGCGACGGATAAAACCCCAGCTCACGACCC # Right flank : ACCCCGCTCGGTGACCGGCTCGCGCCTCCGTGTCCGGAAAAGCCGGACGGCCGGTCCGCGGGTGCGGCCGGCCGTCGTGTGGGTGGGGGCGCTCAGACAGCGCCTGTGGTCACTGCATCACCGCGCGGGCGAGGGCCCGGCGGGCGCGTCGGGAGGCGCGTTCCGCCCGGCGCTGGAGTCGGTCTGATCGGCGGGCTTGGCGCTGTGCCTCCGCGAGCCTGCCGGCCATACGTTGGGACATGGCTTCCGCGGCGCGTTCTTCCATATGGGAACGCGCCATGGCTTCTGGGATGAGTTGCAACTTCCTGGTCCTGTTCTGTTCCTGTCGGGACTGACGTTGTCCGACAGGGCGGCGGCTGGTGGCCGTCTCCGTGTGGGGTTCGATCACCAGCGCCTGGTGATGCCTGCGCGGCCCGTAGGGGGCCGGGCGGCCGATGGTTCCGTGCGTGCTCATGCCGAGACCGGGTTCTTCCGGGGGCGGCCACGGGGCCGCTTCCTCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCCGCGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94742-93980 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDGT01000013.1 Streptomyces sedi strain JCM 16909 NODE_13_length_210150_cov_55.903149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94741 29 100.0 32 ............................. GTGCACGCCGCAGGTCCGCTGCGGGCCCTCCG 94680 29 100.0 32 ............................. AGGTCGGCCAGCCTCATGTCAGCACCTCCCGG 94619 29 100.0 32 ............................. TGCGAGTGGGCTACGCCCGCGCCATGTGGCTC 94558 29 100.0 32 ............................. AGTGGTGGCCGGCGGCCGAACGCCGGGCCCTC 94497 29 96.6 32 .....................A....... CAACCCGTCCTGCTCTCGCCAGCCCGGCTCGC 94436 29 96.6 32 .....................A....... CATCCCGGACCTGCTCCAGACCGAGGACTACG 94375 29 96.6 33 .....................A....... GCGGAATTCTGTCGTTGGCCGAGGATCGTCTCC 94313 29 93.1 32 ...T.................A....... AGCATCATCCCGGACCTGATCATCGGGATCGG 94252 29 93.1 32 ...T.................A....... TCCTCATCCACATCCGCCAGCGGGATGAGGGT 94191 29 96.6 32 .....T....................... GAGCAGTACTACGGCGGCGGCCCGTTCACCGG 94130 29 96.6 32 ....................A........ GCCGATCTACCAGTAGATCGGCCCTTCTGAAC 94069 29 93.1 32 ..............T.T............ ACCGGCGGCGGCACATCGTGCTCGGCGCTCGC 94008 29 93.1 0 ......................C..G... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 96.6 32 CTGCTCCCCGCACGCGCGGGGGTGTTCCC # Left flank : CTTGTCGGGACGGTTCGCGATCCTCGTTTGCTGTGCGGTCGTGCTCCAGACGCGGGAGGCCGACGGCGGCTCGGGCAACGCGGGCGATGGCCGACGGGTCGGGGTTGACCCGTAGCCGATGTCGGTCAGGGCGGGATGCCCAACGTCGCGGCGAGCCGGTGCAGCACATCGAGCAACTGCGCGTCCCCGCCCTCGTGGCAGGACCCCTCAGCCGGTCGGCGAACGGCGCATCGAAGGCCGTCGGGGTCCGCCGGGCCCCGGCCGAAGAGTGGACCCGCCACCGCGGGCGAGCGTGTGCTGAACGATTTCCGGGAAGGGCGAAGGGACGAGCCGCGCACAACTAGGGTGGTGATGAGGGCTGTTGCCTACCCGAGGGAGCGAGGGAAGCCGTGACACGTCAGGGTCGCTGGCGTCTGTGCAGCGAACGTGGCCGCCTTGGGCCCGAAGGTAAAGTAAGTAAAATCCGCCACTGACACGGATAGAACCGCAGGTCGCGAACT # Right flank : GGTAGCCGATCTAACAGTTCGATCGGGCACGCCCGCTCTCCGCCCGCACAGTGATACGACCGGTGGCCGATTCAACGTAAATCGGCGAGGCCGAGAGTCTCCTCCCGCCCCTCAGATGAAGGCCGCCTCCGGGCGGTCGGTGTTGATGAGGAGGGGGAGGCGGCGGCGTTGGCCGGTGGCGATGATGGCGTACTGGTAAAGGGCCGGGGGCTCGTACAGCTCCCGCATCGGGACCCAACTCGCCCCCTCCTTCGGGTCCCTGGACGGCACGTCCGGGAGGACGCCGCCGTCCAGGACGTACGTCAGCCCGTTGAGCGTGCCTTCGTCGTCCGTCGTCGGGGTGACGGCCACCACCTCCGACAGGGCACGTTCGCAGCCGGTTGCCTCAAGGAACGTCTCGCGGGCGGTCAGGATGATGCAACGGCCGGGCGGCACCTGGCCGTTGGGCAGGACCCAGCCCTCCTGACCGTCCTCCCGCATCCCGCGCACCATCAGCATGT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGGTGTTCCC # Alternate repeat : CTGCTCCCCGCACGCGCGGGGATGTTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCCGCGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 99533-98448 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDGT01000013.1 Streptomyces sedi strain JCM 16909 NODE_13_length_210150_cov_55.903149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 99532 29 100.0 32 ............................. CTCTGGGCCACGTAGGAGTGCAGCCACGTACC 99471 29 100.0 32 ............................. ACAGCGTCGAACCCGATGCCCAGGCCCCGGCT 99410 29 100.0 32 ............................. ATCCGGGAGGAGCTGGAGCGCCGCGAGCATCT 99349 29 100.0 32 ............................. GGGGTGGGGGCGAAGCCGTCGGCCCCGGCGTC 99288 29 100.0 32 ............................. TCGGATGCCCACGCCGGAGGAGTCCGGTCGAC 99227 29 100.0 32 ............................. CGGCGCGAACACGGCCGTGGGGGCGGTGTCGG 99166 29 100.0 53 ............................. CGGTCGCACAGGTCGTAGGCCGCGCGCAGCGCCTCGTACAGCGCGCTCATGCT 99084 29 100.0 32 ............................. TGGGTTCAGGTCGTGGCCGACTCCCCGGTGGA 99023 29 100.0 32 ............................. TGCTGGACGACCGCGTACAGCTCGGCCGGAAC 98962 29 100.0 32 ............................. TCCTGGTCGAAACCTGCAAGGAGCTGGTCATC 98901 29 100.0 32 ............................. AGCAGGGCGGCAGCGCCGCCGGCCAGGGCCAC 98840 28 93.1 32 .........A...........-....... TTCCTCGCGCCGCTGCTGCTCAGCGCCGGGTC 98780 29 96.6 32 .....................G....... GTCAGTGCCGGCACGATCACCTCGTCACCCGG 98719 29 100.0 32 ............................. CAGCACATCACCGGCGGCAACCCGCTCGACCG 98658 29 96.6 31 ...........G................. ACCGGCTACTCGTACACCGGTGGCACGACGC T [98633] 98597 28 93.1 32 ...........G...-............. AGTCCCGGGGACCACAACGAATCATCCATCGT 98537 29 93.1 32 ...........G.........G....... GGGCCGAGGAAGTCGCCCCACTCCGCGAGGCC 98476 29 86.2 0 .............GT.......C.A.... | ========== ====== ====== ====== ============================= ===================================================== ================== 18 29 97.7 33 CTGCTCCCCGCACACGCGGGGATGTCCCC # Left flank : AGACCGCCAACGCCCCTGCACGGGCATGGATCGCCTTCTCCACGGCGGTGACGTCGTCATGTCGCCGACGGCGCCAGGCGCGCGCTGAACCCTCCGCCTCCTGGCGGTCGAGAGGAAGAACTGCGGGAAGGAACGCACGGCGAGATGGAGGTGCGTCTCCATCCTCGCGCACCGAGACCGGGCCTCGGCAAGGCGGTGAACGGCGAAAGGAGGGTCATCGGGGCATACCGCCTCTCGTCGAGGGATGGCAAACCCCCGTCGCGAACCGCTGGCCAAGGACCGGCCCATCAGCGTGGTGAGCGTGTGACTGAACGACTTCAGCCAAGGAGCAGTGCAACTAAGCTGATGCCGAAGGCTATTGGTCGGCCGACGGGGAAGGGGAGCGAGTGACATCTCGTGACCGTTGGACCGCTACATGGGAGGGGCGCGGCGCCTTGGGACCCAGAGGTAAAGTAAGTAAAATCCACCGCTGCCGCTGATAAACCCGCAGGTCGCGAACT # Right flank : TAACGAGCACCTGCCGGCTCCGGTAGGTGCTCCCCGCTCCGTGCGAGGTGATCCCCGGCGTGCTTCTGCCCGCCGGTGCCGCGAGGTGATGGCACCGGCAGGAAAGGCGACGTTCGTCATCAGATCTCCGCCGGCAGGTCGAACGCCGCGCCTCCGTCCCTGCCGCCCGGCGCGGCGGAGCGTACGAACGGCGCGTAGATGCGCGCTTCGCTCCAGAAGCGCACCCCGAATCCGGGAGTTGTGGGCGGCGTTGAGCGATCCGAGTAGCCGTACACCGACTCGATCTCCCCGGACCCGGCGTTGTTGATCAACGCCGACAGGTACAGCTCCAGTCGGGGCACCGGCACGCGGCCCGTCTCGATCTCCGGCAGGGGCAGCGGGTTGGGCGCCTCCTTGACGACCGGTTCCTCCGGCTGGCTGCCGTCATCCCCGGGACGGGCCTGGGCGGTGATCGCGTGCCACAACCGTGCACCCGACGGGAGCGTGACGCACACCCCGTA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 100743-100413 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDGT01000019.1 Streptomyces sedi strain JCM 16909 NODE_19_length_136542_cov_50.909042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100742 29 100.0 32 ............................. GGGCGCCCCCGGACCGCGCATGGCGGGGACGC 100681 29 100.0 32 ............................. GTCGTAGACCGGTGGCCGTTTGTCGGCCGGCA 100620 29 100.0 32 ............................. GACGAGATCGCGGAGAGCGAGAAGCACCTCGC 100559 27 93.1 32 ................-....-....... CTGGAGGGCTGCTCCTTCTGCCTGGAGACCGG 100500 29 100.0 32 ............................. CACCAGGGCCAGACCGAGGACCTTGCCACCCG 100439 27 89.7 0 .........--................T. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTCCGCCCCGCCCACGCGGGGATCGACCG # Left flank : AACGCGCCGCCACCGAACACGCCATGGAATCCATCGCCGAAACCAACACCATCCCGCCCCCCACCGACGCCCTCCGCGACCTCCACCCCCTCACCACCACCGACGACGAGGACGCCCTCACCACCCGCCTCGGCGCCGACAGCATCCGCGTCCTCCCCGTCTACACCGACCCCGACGGCAACCACTGGCTCGACCGCACCACCCGCCACCAACCACTCCCGCACACCGTCCACCCCACCGACAAACCCACCATCCGCCGCCTCATGCACAAAACCATCCCCATCAACCTGGACACCCTCCAACGAACCGGCACCCCAACCCACACCCCACCCGGCTGGACCACAACCGGCGCCCTCCGCGACATCCACCTCCTCCCCCAACCCACCACCAACACCTGTACTGCAACCCACCACCTCGACCCCCTCAACGGCCTCGTCAGCACAGGCGACACCTTCAGCAAAGGAATGGCAAAGCGTCTCTAACATCGCAGGTGAAAAAGG # Right flank : GCCGAGACGAGCAATGCCGTCGTCAAGCATGTGTCCGCCCTGCCCGCGCGAATGCGAGCTGCGTTTGGGGAGACTCGCCGTCAGCATCTGCCGTGCTTCTCCGGCATGAGTCACGCCAACGGTGACTCATGTCAAATACGTGTCCAAGTGCCTGTTCGCACGGCACCCCCTGCCGCAAACACGCAGGTAGAAGCCCACGTTCGATGCATCAGCCCAGGTGCCTTCTAAGCACCTTCCCAATTGCTTCCGGCAGCCCCATGCTTGCTCCGGCCGCAACGCGACTCCGTCGCATGGTTCTCAGGGAGCCGGGAGCCATCTGCGTCCCACACCCGGTCGACAACCCTCGCGGCCATCCCGTCCTCGGCTCCGCGCTCCCGCACCTCCGTGACATCGCCGCATCTGGCGCGGGGCATGGAAGGCGCCTCGTCGGCCCCGTCACGTGGACAACGCGTGGACAACAGCAGTCAGGAAGACTCGGAAAACCCCAGGTAGCGGGCACG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCCCACGCGGGGATCGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 108785-109546 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDGT01000019.1 Streptomyces sedi strain JCM 16909 NODE_19_length_136542_cov_50.909042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108785 29 100.0 32 ............................. TAGCGGGTGAGGCGCGCGAGCTGTGGCACTCC 108846 29 100.0 32 ............................. ATCGCGGGCATTTTCGTGGTCTCCGCTGAGCT 108907 29 100.0 32 ............................. GTAGCGGGCGACCTCCTCGGCGATCACCACAG 108968 29 100.0 32 ............................. TGCCACCTCCGTCGGGCCGCTGATCGTGTCAA 109029 29 100.0 32 ............................. ATTCGCGCCGCCGGAATTGCCGGTGAGGTGAT 109090 29 100.0 32 ............................. CGTGGCGTGGTCGTGGACTACGGCGGGGATGA 109151 29 93.1 33 ..........................A.C GGCGATACTGCGCGGCGCTACCGGGCTGGATGG 109213 29 100.0 32 ............................. ACCCACCAGCCCTCCAGGCCCACCCGAACCCC 109274 29 93.1 32 .A..........................A GCACGGCGGCGAGCGCGACGCCGGGGAAGGCC 109335 29 100.0 32 ............................. GAACTCTCCAACATGGTCAACGCGTGCCCGGC 109396 29 96.6 32 .A........................... CGGCGGCCACCGCAGCTTGCATCGCCGCCGAG 109457 29 96.6 32 ..............A.............. GCTGATGGCCGGCCGCTGGGCACAGTTCGGCC 109518 29 82.8 0 ..............T........T.G.TA | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.1 32 GTCCGCCCCGCCCGCGCGGGGATCGACCG # Left flank : CTGGATCACCACCGACCACACCGTCCACTACCGCATCCACGCCGACCCCACCGCCACCATCCGCGACCCCCAACGCCTCCACACCGAAGGCCTCCGCCGAGCCACAGCCCGCGGCCTCAAAGACCAGGAAGCCGAGGACTACGCACAGCAACTCGTCACCCGACACGCCCAACGCCGACGCGGCCTACGCCTCCCCCTCACCACCCAGGAAGACATCCTCACCTGGTGGCACCGACAAGCCGAACGCGCCGGACTCCACCCCCTCCTCACCCTCGACGCCCCCACCCCCACCACCCCCGCCACCCGACCCGACGGCGAAGCCAGATTCACCCTCACCCGCTTCGACGGCATCGCCCGCATCACCAACCCCACCGCCCTCCACACAGCCCTCACCACCGGCATCGGCCCAGCCCGCTCCTTCGGGGCAGGCCTCCTCACCATCGCCCCCCACAACGGGTAAAGAAATGGCAAACCCACTACAACGCCGCAGGTCAAAAAGG # Right flank : ACTGTCTCCACCGCCGACGGTCTTCGCGGTGCGGGGGATGACATGCCGGTGGGTTGCCGCGGTCGGCGAGCAGGTTGCAGGCTGCGGCGGGCCAGGTCCAGGGGCGGGGGCCTTGTTGGCCTTGGATGCAGGCGAGGCGGTGGTGGGCGTGGGGGAGGAGTGCCGGGTGGTGGGTGGCTTGTTGGAAGGCGAAGGTGACTTTGCGGAGTTCGCGGATGTCGCGGAGGGTGGGGTAGCCGGGCCAGGTGGTGACATCGTGGCCGTAGGTGGTGCAGAAGTCTCGGTACTGCTCGGAGGAAAGCGTGCCGAGGGTGTTGTGGTCGACGGCGGTGGCGGTGAGGTCCCATTCGGGTGGGCCGATTGCGGTGCGTTCGAAGTCCAGGAGGTGGGCGGTGCCGTTGTCGGTGACGGCGACGTTGCCGTGCCAGGCGTCGCCGTGGAGGACGCTTTCGTCCATGCCGGCGGGCAGGTCGGCCCACTGTTCGCGCAGTGAGCCGAGG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCCCGCGCGGGGATCGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //