Array 1 9225-11999 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWX02000030.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0095 NODE_30_length_41542_cov_9.110827, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9225 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 9286 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 9347 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 9408 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 9469 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 9530 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 9591 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 9652 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 9713 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 9774 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 9835 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 9896 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 9957 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 10018 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 10079 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 10140 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 10201 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 10262 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 10323 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 10384 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 10445 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 10506 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 10567 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 10628 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 10689 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 10750 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 10811 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 10872 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 10933 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 10994 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 11055 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 11116 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 11177 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 11238 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 11299 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 11360 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 11421 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 11482 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 11543 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 11604 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 11665 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 11726 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 11787 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 11848 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 11909 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 11970 29 96.6 0 ............T................ | A [11997] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5286-5924 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWX02000180.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0095 NODE_180_length_7444_cov_9.448408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5286 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 5347 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 5408 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 5469 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 5531 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 5592 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 5653 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 5714 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 5775 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 5836 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 5897 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //